Wall clock time and date at job start Tue Mar 31 2020 12:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00441 * 2 1 4 4 C 1.52993 * 109.47446 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46739 * 59.99755 * 3 2 1 6 6 O 1.21284 * 119.99792 * 226.14201 * 5 3 2 7 7 N 1.34771 * 120.00045 * 46.14263 * 5 3 2 8 8 C 1.47426 * 125.65157 * 354.83155 * 7 5 3 9 9 C 1.55383 * 104.87515 * 204.09782 * 8 7 5 10 10 C 1.55153 * 101.36637 * 323.01502 * 9 8 7 11 11 O 1.42904 * 110.71768 * 277.04094 * 10 9 8 12 12 C 1.50704 * 110.72176 * 153.94921 * 10 9 8 13 13 H 1.08002 * 119.99732 * 243.84433 * 12 10 9 14 14 C 1.37875 * 120.00120 * 63.83806 * 12 10 9 15 15 N 1.31515 * 119.99883 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00185 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47051 * 90.00378 * 16 14 12 18 18 H 1.48503 * 109.47147 * 210.00253 * 16 14 12 19 19 H 1.48502 * 109.46857 * 330.00428 * 16 14 12 20 20 C 1.47026 * 125.64798 * 174.79133 * 7 5 3 21 21 C 1.50703 * 109.47165 * 300.00215 * 3 2 1 22 22 C 1.38234 * 120.00223 * 164.90269 * 21 3 2 23 23 C 1.38228 * 120.00099 * 179.76248 * 22 21 3 24 24 C 1.38237 * 119.99947 * 0.50905 * 23 22 21 25 25 C 1.38240 * 120.00059 * 359.74444 * 24 23 22 26 26 C 1.38236 * 119.99562 * 345.17502 * 21 3 2 27 27 H 1.08999 * 109.47409 * 299.99944 * 1 2 3 28 28 H 1.08999 * 109.47133 * 60.00195 * 1 2 3 29 29 H 1.09002 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47188 * 300.00251 * 4 3 2 31 31 H 1.09002 * 109.47317 * 59.99652 * 4 3 2 32 32 H 1.08992 * 109.47368 * 180.02562 * 4 3 2 33 33 H 1.09003 * 110.36391 * 322.93374 * 8 7 5 34 34 H 1.08992 * 110.36570 * 85.14183 * 8 7 5 35 35 H 1.09000 * 111.18882 * 204.97936 * 9 8 7 36 36 H 1.09006 * 111.02489 * 80.97929 * 9 8 7 37 37 H 0.96690 * 114.00153 * 296.15521 * 11 10 9 38 38 H 0.97006 * 120.00151 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.88676 * 59.55685 * 20 7 5 40 40 H 1.09002 * 110.01147 * 298.46006 * 20 7 5 41 41 H 1.07998 * 119.99388 * 0.02562 * 22 21 3 42 42 H 1.07996 * 120.00536 * 180.23164 * 23 22 21 43 43 H 1.08000 * 120.00698 * 179.72100 * 24 23 22 44 44 H 1.07996 * 120.00046 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00130 * 0.02562 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 1.5656 2.0532 1.2305 6 8 1.1774 3.1984 1.1368 7 7 1.5992 1.4495 2.4349 8 6 1.9436 0.0369 2.6787 9 6 1.2589 -0.3134 4.0288 10 6 1.4414 1.0107 4.8167 11 8 2.7366 1.0669 5.4179 12 6 0.3645 1.1632 5.8599 13 1 -0.3422 1.9770 5.7915 14 6 0.2814 0.2637 6.9015 15 7 1.1422 -0.7271 6.9850 16 14 -1.0539 0.4523 8.1942 17 1 -2.2608 -0.3034 7.7731 18 1 -0.5650 -0.0790 9.4920 19 1 -1.3971 1.8892 8.3453 20 6 1.2994 2.0907 3.7235 21 6 1.5656 2.0533 -1.2305 22 6 1.7343 3.4233 -1.3053 23 6 1.3309 4.1086 -2.4359 24 6 0.7492 3.4254 -3.4875 25 6 0.5757 2.0561 -3.4106 26 6 0.9839 1.3701 -2.2820 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.8567 0.6437 0.8909 31 1 3.8574 0.6434 -0.8891 32 1 3.9788 2.1802 0.0011 33 1 1.5508 -0.5926 1.8801 34 1 3.0241 -0.0820 2.7576 35 1 1.7690 -1.1379 4.5270 36 1 0.2024 -0.5397 3.8845 37 1 2.8902 0.3847 6.0856 38 1 1.0840 -1.3597 7.7180 39 1 0.2810 2.4792 3.7163 40 1 2.0039 2.9013 3.9097 41 1 2.1851 3.9575 -0.4820 42 1 1.4661 5.1784 -2.4959 43 1 0.4299 3.9614 -4.3691 44 1 0.1209 1.5225 -4.2319 45 1 0.8478 0.3004 -2.2215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:54 Heat of formation + Delta-G solvation = -102.143435 kcal Electronic energy + Delta-G solvation = -28426.492625 eV Core-core repulsion = 24601.999060 eV Total energy + Delta-G solvation = -3824.493565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17514 -40.17651 -38.87940 -38.49007 -36.10694 -34.19374 -33.86793 -31.79151 -31.64337 -30.55574 -30.01206 -27.46958 -27.20683 -25.58235 -23.89578 -23.59215 -22.49487 -21.43596 -20.40887 -19.23970 -18.63765 -18.07205 -17.13093 -17.03940 -16.92471 -16.71333 -16.37927 -16.08024 -15.73344 -15.37322 -15.02867 -14.79481 -14.76853 -14.25917 -14.13726 -13.84854 -13.57564 -13.55644 -13.40819 -13.26140 -13.21024 -13.09912 -12.91110 -12.73954 -12.61971 -12.39427 -12.28777 -12.05939 -12.00895 -11.87871 -11.37415 -11.29818 -10.68843 -10.36621 -10.13671 -9.73957 -9.70014 -9.64910 -8.26525 -6.40994 0.34823 0.52302 1.34373 1.39842 1.43164 1.51995 1.89926 2.37945 2.55830 2.86369 2.98657 3.33002 3.46387 3.82851 3.94385 4.01555 4.10367 4.19589 4.23046 4.30889 4.36674 4.40859 4.44129 4.52781 4.56098 4.60922 4.68194 4.70026 4.72709 4.80983 4.94076 5.02346 5.06773 5.16280 5.17330 5.19503 5.43770 5.49626 5.54089 5.55493 5.62884 5.74528 5.90924 6.04853 6.09900 6.51130 6.62387 6.97562 7.29514 7.40498 8.79648 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024870 B = 0.003487 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.567351 B = 8027.017210 C = 8110.491221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.356 6.356 3 C 0.157 3.843 4 C -0.133 4.133 5 C 0.500 3.500 6 O -0.571 6.571 7 N -0.597 5.597 8 C 0.098 3.902 9 C -0.124 4.124 10 C 0.237 3.763 11 O -0.593 6.593 12 C -0.565 4.565 13 H 0.050 0.950 14 C 0.039 3.961 15 N -0.905 5.905 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.128 3.872 21 C -0.126 4.126 22 C -0.094 4.094 23 C -0.139 4.139 24 C -0.114 4.114 25 C -0.129 4.129 26 C -0.109 4.109 27 H 0.019 0.981 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.381 0.619 38 H 0.273 0.727 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -0.833 -19.264 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.275 6.275 3 C 0.114 3.886 4 C -0.190 4.190 5 C 0.288 3.712 6 O -0.451 6.451 7 N -0.329 5.329 8 C -0.023 4.023 9 C -0.162 4.162 10 C 0.197 3.803 11 O -0.402 6.402 12 C -0.603 4.603 13 H 0.068 0.932 14 C -0.163 4.163 15 N -0.544 5.544 16 Si 0.784 3.216 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.203 1.203 20 C 0.005 3.995 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.157 4.157 24 C -0.131 4.131 25 C -0.147 4.147 26 C -0.126 4.126 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.167 0.833 44 H 0.170 0.830 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.031 -0.032 -19.665 19.692 hybrid contribution -0.942 0.135 1.877 2.105 sum 0.088 0.104 -17.788 17.789 Atomic orbital electron populations 1.23238 0.80062 1.04861 1.00647 1.87953 1.20953 1.24545 1.94003 1.20404 0.96910 0.82844 0.88414 1.21815 0.88349 1.03780 1.05033 1.21390 0.78001 0.87076 0.84711 1.90635 1.48727 1.19789 1.85956 1.48652 1.65835 1.13029 1.05372 1.22853 0.99874 0.80586 0.98988 1.23161 0.99482 0.99653 0.93945 1.19553 0.81740 0.90146 0.88822 1.86091 1.35461 1.59450 1.59226 1.21725 1.14799 1.13016 1.10773 0.93203 1.25571 0.97797 0.93995 0.98912 1.69694 1.36803 1.15108 1.32757 0.85550 0.79348 0.78134 0.78528 1.19848 1.20218 1.20318 1.21816 0.98900 0.96142 0.82632 1.19926 1.02829 0.94471 0.95420 1.21227 0.98882 0.93757 0.97399 1.21400 0.99880 1.00816 0.93578 1.21547 0.97754 0.94881 0.98949 1.21449 1.00395 0.94718 0.98141 1.21230 0.97543 1.01004 0.92856 0.96194 0.91578 0.86039 0.90905 0.88185 0.90595 0.87303 0.91522 0.90354 0.92601 0.76800 0.91767 0.92566 0.93704 0.87082 0.84769 0.83320 0.83032 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.06 113.37 1.03 1.21 16 2 O -0.36 -9.50 7.02 -148.98 -1.05 -10.54 16 3 C 0.16 4.60 0.57 -12.29 -0.01 4.59 16 4 C -0.13 -3.32 8.71 71.98 0.63 -2.69 16 5 C 0.50 18.90 5.28 87.66 0.46 19.36 16 6 O -0.57 -24.74 13.79 -3.04 -0.04 -24.79 16 7 N -0.60 -23.92 3.22 -810.84 -2.61 -26.53 16 8 C 0.10 3.59 5.85 87.02 0.51 4.10 16 9 C -0.12 -5.36 5.61 32.15 0.18 -5.18 16 10 C 0.24 11.66 0.85 -10.35 -0.01 11.65 16 11 O -0.59 -30.24 13.07 -148.98 -1.95 -32.19 16 12 C -0.56 -30.15 8.21 25.60 0.21 -29.94 16 13 H 0.05 2.72 7.55 -2.91 -0.02 2.70 16 14 C 0.04 1.99 5.28 84.65 0.45 2.44 16 15 N -0.90 -45.94 10.67 21.45 0.23 -45.72 16 16 Si 0.96 41.36 29.54 68.60 2.03 43.39 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.13 5.99 6.22 86.73 0.54 6.53 16 21 C -0.13 -3.46 4.24 -19.86 -0.08 -3.55 16 22 C -0.09 -2.74 8.18 22.27 0.18 -2.55 16 23 C -0.14 -3.23 10.05 22.27 0.22 -3.00 16 24 C -0.11 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 26 C -0.11 -2.41 7.46 22.27 0.17 -2.24 16 27 H 0.02 0.61 7.06 -2.39 -0.02 0.59 16 28 H 0.07 1.51 5.08 -2.39 -0.01 1.50 16 29 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.07 1.87 6.80 -2.38 -0.02 1.85 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 1.88 8.10 -2.39 -0.02 1.87 16 33 H 0.11 3.48 4.99 -2.39 -0.01 3.47 16 34 H 0.07 2.36 7.49 -2.39 -0.02 2.34 16 35 H 0.08 3.51 7.64 -2.39 -0.02 3.49 16 36 H 0.06 2.49 8.04 -2.38 -0.02 2.47 16 37 H 0.38 19.49 7.23 -74.06 -0.54 18.96 16 38 H 0.27 13.15 8.31 -92.70 -0.77 12.38 16 39 H 0.06 2.75 7.65 -2.39 -0.02 2.73 16 40 H 0.04 2.19 8.07 -2.39 -0.02 2.17 16 41 H 0.11 3.69 6.39 -2.91 -0.02 3.67 16 42 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 2.72 6.14 -2.91 -0.02 2.71 16 Total: -1.00 -61.49 351.27 2.01 -59.47 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: 0.48 Total: 40.21 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.92 Total: -3.31 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -2.38 Total: -72.25 kcal Atomic # 8 Polarization: -64.48 SS G_CDS: -3.04 Total: -67.52 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -61.49 2.01 -59.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.670 kcal (2) G-P(sol) polarization free energy of solvation -61.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds