Wall clock time and date at job start Tue Mar 31 2020 13:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47494 * 2 1 4 4 C 1.53006 * 109.46616 * 120.00067 * 2 1 3 5 5 C 1.52999 * 109.47296 * 64.99847 * 4 2 1 6 6 C 1.52994 * 109.46991 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.47557 * 55.00091 * 6 5 4 8 8 C 1.53003 * 109.47154 * 175.00386 * 6 5 4 9 9 O 1.42901 * 109.47383 * 54.99576 * 8 6 5 10 10 N 1.46499 * 109.47168 * 294.99622 * 6 5 4 11 11 S 1.65603 * 119.99863 * 144.99977 * 10 6 5 12 12 O 1.42101 * 104.27569 * 308.93451 * 11 10 6 13 13 O 1.42102 * 104.28061 * 181.07631 * 11 10 6 14 14 C 1.81401 * 104.44816 * 65.00258 * 11 10 6 15 15 C 1.53001 * 109.47054 * 174.83092 * 14 11 10 16 16 C 1.50703 * 115.55126 * 295.19679 * 15 14 11 17 17 H 1.07997 * 119.99819 * 95.16497 * 16 15 14 18 18 C 1.37870 * 119.99789 * 274.89042 * 16 15 14 19 19 N 1.31514 * 120.00255 * 6.45673 * 18 16 15 20 20 Si 1.86806 * 119.99758 * 186.45664 * 18 16 15 21 21 H 1.48493 * 109.47244 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47274 * 120.00230 * 20 18 16 23 23 H 1.48509 * 109.46989 * 240.00214 * 20 18 16 24 24 C 1.53005 * 117.49991 * 80.86924 * 15 14 11 25 25 C 1.53001 * 117.49836 * 149.52427 * 15 14 11 26 26 H 1.09001 * 109.47377 * 300.00301 * 1 2 3 27 27 H 1.09001 * 109.46829 * 60.00185 * 1 2 3 28 28 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46976 * 239.99338 * 2 1 3 30 30 H 1.08994 * 109.47403 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47169 * 300.00237 * 3 2 1 32 32 H 1.09001 * 109.47054 * 59.99501 * 3 2 1 33 33 H 1.08995 * 109.46895 * 304.99870 * 4 2 1 34 34 H 1.09002 * 109.46559 * 184.99884 * 4 2 1 35 35 H 1.09006 * 109.47000 * 59.99705 * 5 4 2 36 36 H 1.08997 * 109.47055 * 300.00412 * 5 4 2 37 37 H 1.08994 * 109.47256 * 175.00524 * 8 6 5 38 38 H 1.09003 * 109.46604 * 294.99687 * 8 6 5 39 39 H 0.96699 * 114.00139 * 180.02562 * 9 8 6 40 40 H 0.96991 * 120.00643 * 325.00543 * 10 6 5 41 41 H 1.08999 * 109.46869 * 54.83312 * 14 11 10 42 42 H 1.08998 * 109.47382 * 294.83184 * 14 11 10 43 43 H 0.97009 * 119.99731 * 185.02573 * 19 18 16 44 44 H 1.08998 * 117.49623 * 215.00279 * 24 15 14 45 45 H 1.09005 * 117.49455 * 0.02562 * 24 15 14 46 46 H 1.09002 * 117.50013 * 359.97438 * 25 15 14 47 47 H 1.09008 * 117.49613 * 144.97295 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1881 6 6 2.1455 -2.9168 2.4370 7 1 1.7826 -2.4031 3.3272 8 6 1.6356 -4.3594 2.4370 9 8 2.0131 -4.9982 1.2158 10 7 3.6105 -2.9169 2.4364 11 16 4.4391 -2.7921 3.8648 12 8 3.8651 -1.6608 4.5051 13 8 5.8066 -2.7999 3.4786 14 6 4.0227 -4.3116 4.7639 15 6 4.8349 -4.3767 6.0589 16 6 6.3272 -4.4956 5.8850 17 1 6.9455 -3.6105 5.9066 18 6 6.9035 -5.7349 5.7040 19 7 6.1437 -6.7982 5.5559 20 14 8.7635 -5.9039 5.6691 21 1 9.3855 -4.5685 5.8564 22 1 9.1988 -6.8108 6.7615 23 1 9.1850 -6.4666 4.3610 24 6 4.3251 -3.5687 7.2540 25 6 4.2034 -5.0945 7.2534 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6053 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2952 35 1 2.0697 -2.6550 0.3003 36 1 0.5488 -2.2723 1.1420 37 1 2.0704 -4.8984 3.2787 38 1 0.5493 -4.3606 2.5270 39 1 1.7218 -5.9176 1.1464 40 1 4.0952 -2.9901 1.5995 41 1 4.2578 -5.1766 4.1437 42 1 2.9590 -4.3133 5.0016 43 1 6.5471 -7.6788 5.5017 44 1 5.0690 -3.1231 7.9143 45 1 3.4108 -2.9910 7.1176 46 1 3.2092 -5.5200 7.1169 47 1 4.8673 -5.6531 7.9133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599411167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:26 Heat of formation + Delta-G solvation = -151.094890 kcal Electronic energy + Delta-G solvation = -26601.116802 eV Core-core repulsion = 22909.944494 eV Total energy + Delta-G solvation = -3691.172308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.30724 -38.56894 -37.88409 -37.31271 -36.77151 -35.59274 -34.06453 -31.51240 -29.97185 -28.76392 -27.95380 -27.47279 -24.57821 -23.00020 -21.94384 -21.52571 -20.78585 -20.27025 -18.72384 -18.35556 -17.90388 -17.26888 -16.82532 -16.62637 -16.17861 -15.91566 -15.62556 -15.51069 -15.11722 -15.01220 -14.68992 -14.18692 -13.74956 -13.70223 -13.66172 -13.46084 -13.16821 -13.01872 -12.91249 -12.87928 -12.84364 -12.71296 -12.49091 -12.43229 -12.28298 -12.18682 -11.93142 -11.87891 -11.60051 -11.43502 -11.39664 -11.31373 -10.86919 -10.74258 -10.54509 -10.35059 -9.86383 -8.19180 -6.31156 -0.46810 1.35769 1.40417 1.51434 2.03927 2.41015 2.98251 3.09247 3.35603 3.44271 3.49699 3.64872 3.99195 4.03944 4.05212 4.17485 4.24237 4.30341 4.40482 4.45271 4.50665 4.58635 4.60654 4.70685 4.81948 4.84570 4.86495 4.92668 4.94884 4.96558 5.01105 5.11994 5.16039 5.21629 5.30963 5.39513 5.42874 5.47621 5.57986 5.59175 5.62544 5.74010 6.19078 6.23775 6.74809 6.98441 7.40478 8.88707 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018503 B = 0.003833 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.930476 B = 7302.373841 C = 7490.518975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.122 4.122 5 C -0.105 4.105 6 C 0.137 3.863 7 H 0.104 0.896 8 C 0.049 3.951 9 O -0.578 6.578 10 N -1.105 6.105 11 S 2.619 3.381 12 O -0.994 6.994 13 O -0.995 6.995 14 C -0.548 4.548 15 C 0.008 3.992 16 C -0.523 4.523 17 H 0.046 0.954 18 C 0.041 3.959 19 N -0.892 5.892 20 Si 0.933 3.067 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.279 1.279 24 C -0.202 4.202 25 C -0.134 4.134 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.393 0.607 40 H 0.419 0.581 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.264 0.736 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.619 6.100 -10.054 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.159 4.159 5 C -0.144 4.144 6 C 0.030 3.970 7 H 0.121 0.879 8 C -0.031 4.031 9 O -0.386 6.386 10 N -0.864 5.864 11 S 2.716 3.284 12 O -0.984 6.984 13 O -0.985 6.985 14 C -0.681 4.681 15 C 0.006 3.994 16 C -0.560 4.560 17 H 0.065 0.935 18 C -0.161 4.161 19 N -0.529 5.529 20 Si 0.758 3.242 21 H -0.200 1.200 22 H -0.195 1.195 23 H -0.205 1.205 24 C -0.239 4.239 25 C -0.173 4.173 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.242 0.758 40 H 0.254 0.746 41 H 0.141 0.859 42 H 0.150 0.850 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.119 0.881 46 H 0.108 0.892 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.891 7.269 -9.870 19.287 hybrid contribution 1.088 -1.558 0.032 1.900 sum -13.803 5.711 -9.838 17.887 Atomic orbital electron populations 1.21873 0.94189 1.02337 1.01889 1.21116 0.96775 0.95882 0.97685 1.21869 1.00594 0.96311 1.02003 1.21714 1.00360 0.95541 0.98332 1.21707 1.02137 0.93974 0.96540 1.21282 0.78583 0.95267 1.01860 0.87867 1.22936 1.00004 0.92941 0.87173 1.86427 1.82200 1.31383 1.38574 1.55497 1.15408 1.91626 1.23917 1.04445 0.72864 0.76952 0.74123 1.93468 1.79385 1.48599 1.76921 1.93496 1.35380 1.88040 1.81585 1.29949 1.07897 1.19798 1.10466 1.18446 0.92814 1.02973 0.85176 1.20727 0.90948 0.93183 1.51159 0.93548 1.25459 1.01358 0.95784 0.93542 1.70052 1.36108 0.98406 1.48296 0.85893 0.82082 0.78163 0.78015 1.20011 1.19528 1.20489 1.23304 1.02599 0.94574 1.03460 1.22489 1.00110 0.92613 1.02116 0.92740 0.92259 0.91742 0.91234 0.93613 0.91739 0.92885 0.92179 0.93653 0.90806 0.88544 0.93583 0.89634 0.75776 0.74643 0.85892 0.85021 0.92713 0.89925 0.88120 0.89184 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.95 71.98 0.64 -1.41 16 2 C -0.10 -1.69 2.92 -10.79 -0.03 -1.72 16 3 C -0.15 -2.65 9.19 71.98 0.66 -1.99 16 4 C -0.12 -2.62 4.57 30.60 0.14 -2.48 16 5 C -0.10 -2.03 4.29 30.59 0.13 -1.90 16 6 C 0.14 3.18 2.60 44.99 0.12 3.30 16 7 H 0.10 2.34 7.48 -2.39 -0.02 2.32 16 8 C 0.05 0.96 6.87 71.98 0.49 1.46 16 9 O -0.58 -11.68 12.83 -148.98 -1.91 -13.59 16 10 N -1.10 -33.20 4.76 -169.39 -0.81 -34.00 16 11 S 2.62 105.35 5.32 -56.49 -0.30 105.05 16 12 O -0.99 -42.01 17.39 -127.65 -2.22 -44.23 16 13 O -0.99 -49.59 17.13 -127.65 -2.19 -51.78 16 14 C -0.55 -22.09 4.78 71.98 0.34 -21.74 16 15 C 0.01 0.38 1.34 -52.92 -0.07 0.31 16 16 C -0.52 -29.13 7.68 25.60 0.20 -28.94 16 17 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 18 C 0.04 2.25 5.39 84.65 0.46 2.71 16 19 N -0.89 -48.89 12.93 21.44 0.28 -48.62 16 20 Si 0.93 44.58 29.55 68.60 2.03 46.61 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 C -0.20 -8.52 9.96 30.62 0.30 -8.21 16 25 C -0.13 -5.87 9.44 30.62 0.29 -5.58 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.81 6.57 -2.39 -0.02 0.80 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.16 7.75 -2.39 -0.02 1.14 16 35 H 0.07 1.51 7.73 -2.38 -0.02 1.49 16 36 H 0.10 1.42 6.57 -2.39 -0.02 1.41 16 37 H 0.05 1.00 5.90 -2.39 -0.01 0.99 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.39 4.93 9.12 -74.06 -0.68 4.25 16 40 H 0.42 12.08 8.80 -96.76 -0.85 11.23 16 41 H 0.12 5.27 8.14 -2.39 -0.02 5.25 16 42 H 0.13 4.19 7.17 -2.39 -0.02 4.17 16 43 H 0.26 13.74 8.32 -92.70 -0.77 12.96 16 44 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 45 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 46 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 47 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 Total: -1.00 -71.12 388.24 -2.01 -73.13 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.57 Total: 33.62 kcal Atomic # 6 Polarization: -69.86 SS G_CDS: 3.68 Total: -66.18 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -0.53 Total: -82.62 kcal Atomic # 8 Polarization: -103.28 SS G_CDS: -6.32 Total: -109.60 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 105.35 SS G_CDS: -0.30 Total: 105.05 kcal Total: -71.12 -2.01 -73.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599411167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.964 kcal (2) G-P(sol) polarization free energy of solvation -71.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds