Wall clock time and date at job start Tue Mar 31 2020 13:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46749 * 2 1 4 4 C 1.52997 * 109.46839 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.46807 * 180.02562 * 4 3 2 6 6 C 1.38379 * 119.84170 * 270.31700 * 5 4 3 7 7 C 1.37939 * 120.14402 * 180.28301 * 6 5 4 8 8 C 1.39643 * 119.84805 * 359.42100 * 7 6 5 9 9 C 1.47732 * 120.14867 * 180.29872 * 8 7 6 10 10 O 1.21589 * 120.00113 * 327.77124 * 9 8 7 11 11 N 1.34778 * 119.99977 * 147.76405 * 9 8 7 12 12 C 1.36874 * 119.99689 * 3.70403 * 11 9 8 13 13 H 1.08004 * 120.00280 * 319.32837 * 12 11 9 14 14 C 1.39044 * 120.00048 * 139.33157 * 12 11 9 15 15 N 1.31368 * 120.00434 * 161.48809 * 14 12 11 16 16 Si 1.86800 * 119.99933 * 341.48967 * 14 12 11 17 17 H 1.48505 * 109.47169 * 95.26677 * 16 14 12 18 18 H 1.48507 * 109.47154 * 215.26335 * 16 14 12 19 19 H 1.48493 * 109.47229 * 335.26628 * 16 14 12 20 20 C 1.46490 * 120.00427 * 183.69776 * 11 9 8 21 21 C 1.50706 * 109.47067 * 90.00099 * 20 11 9 22 22 O 1.20827 * 119.99540 * 0.02562 * 21 20 11 23 23 O 1.34227 * 120.00156 * 180.02562 * 21 20 11 24 24 C 1.45198 * 117.00094 * 180.02562 * 23 21 20 25 25 C 1.39639 * 119.69895 * 0.28084 * 8 7 6 26 26 C 1.37930 * 119.85095 * 0.02562 * 25 8 7 27 27 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46831 * 299.99691 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99699 * 1 2 3 30 30 H 1.08999 * 109.47228 * 240.00973 * 2 1 3 31 31 H 1.08991 * 109.47531 * 120.00432 * 2 1 3 32 32 H 1.09006 * 109.46859 * 60.00461 * 3 2 1 33 33 H 1.08991 * 109.47457 * 300.00477 * 3 2 1 34 34 H 1.08990 * 109.47596 * 60.00254 * 4 3 2 35 35 H 1.09004 * 109.47080 * 300.00146 * 4 3 2 36 36 H 1.07996 * 119.92964 * 0.02562 * 6 5 4 37 37 H 1.08009 * 120.07420 * 179.69902 * 7 6 5 38 38 H 0.96991 * 120.00597 * 179.97438 * 15 14 12 39 39 H 1.08990 * 109.47782 * 210.00301 * 20 11 9 40 40 H 1.09004 * 109.46902 * 330.00754 * 20 11 9 41 41 H 1.09005 * 109.46861 * 59.99648 * 24 23 21 42 42 H 1.08995 * 109.47334 * 179.97438 * 24 23 21 43 43 H 1.08999 * 109.47299 * 299.99706 * 24 23 21 44 44 H 1.08004 * 120.07663 * 180.02562 * 25 8 7 45 45 H 1.08001 * 119.92989 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 6 4.2949 3.5157 -1.2000 7 6 4.7601 4.8142 -1.2067 8 6 4.9948 5.4747 0.0010 9 6 5.4867 6.8677 0.0016 10 8 6.2179 7.2546 -0.8896 11 7 5.1250 7.7098 0.9898 12 6 4.3643 7.2544 2.0326 13 1 3.5496 6.5697 1.8482 14 6 4.6401 7.6735 3.3294 15 7 3.7294 7.5486 4.2678 16 14 6.3059 8.4141 3.7371 17 1 6.2212 9.8948 3.6614 18 1 6.7044 8.0107 5.1096 19 1 7.3162 7.9257 2.7646 20 6 5.5460 9.1122 0.9480 21 6 4.5094 9.9264 0.2174 22 8 3.5201 9.3900 -0.2227 23 8 4.6850 11.2472 0.0556 24 6 3.6456 11.9680 -0.6575 25 6 4.7619 4.8126 1.2082 26 6 4.3028 3.5120 1.2005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9564 -0.8898 34 1 3.9330 0.9290 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 4.1080 3.0055 -2.1333 37 1 4.9382 5.3205 -2.1441 38 1 3.9220 7.8405 5.1725 39 1 5.6541 9.4897 1.9647 40 1 6.5011 9.1895 0.4283 41 1 2.6997 11.8611 -0.1265 42 1 3.9110 13.0234 -0.7174 43 1 3.5457 11.5605 -1.6635 44 1 4.9410 5.3177 2.1459 45 1 4.1219 2.9988 2.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609991459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:48 Heat of formation + Delta-G solvation = -93.589820 kcal Electronic energy + Delta-G solvation = -26939.895839 eV Core-core repulsion = 23115.773187 eV Total energy + Delta-G solvation = -3824.122652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.14676 -39.34174 -38.01427 -35.97886 -35.51991 -35.00847 -32.18346 -32.09399 -30.42647 -29.28850 -28.12023 -26.53141 -25.28130 -24.05932 -22.07379 -21.54672 -21.00942 -20.58511 -19.28281 -17.95349 -17.30455 -16.73157 -15.94307 -15.74284 -15.51487 -15.25510 -15.10739 -14.60220 -14.34281 -14.04542 -13.75691 -13.47837 -13.20015 -13.04669 -12.91460 -12.78598 -12.66323 -12.50036 -12.29696 -12.02855 -11.88955 -11.60725 -11.35111 -11.27506 -11.08703 -11.07376 -10.67595 -10.58157 -10.50346 -10.38249 -10.32639 -10.12866 -9.90466 -9.40840 -8.83337 -8.34319 -8.06160 -7.99377 -6.61864 -4.25817 1.59453 2.04291 2.81127 2.91741 2.98518 3.12523 3.16046 3.69242 3.94431 4.17455 4.44382 4.81488 4.83784 4.90745 5.07663 5.23219 5.29592 5.34375 5.41393 5.42662 5.54276 5.56163 5.61723 5.70583 5.71761 5.72172 5.76518 5.79780 5.82939 5.91045 5.95174 6.08326 6.10791 6.16631 6.36662 6.38012 6.53381 6.68576 6.81078 6.95872 7.05494 7.13972 7.22636 7.58435 7.86200 8.11525 8.35600 8.73700 9.09565 9.41660 10.46045 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.003674 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.838812 B = 7620.304218 C = 8282.568808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.078 4.078 5 C -0.075 4.075 6 C -0.141 4.141 7 C -0.073 4.073 8 C -0.106 4.106 9 C 0.537 3.463 10 O -0.587 6.587 11 N -0.444 5.444 12 C -0.344 4.344 13 H 0.115 0.885 14 C 0.065 3.935 15 N -0.848 5.848 16 Si 0.860 3.140 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.254 1.254 20 C 0.107 3.893 21 C 0.449 3.551 22 O -0.487 6.487 23 O -0.369 6.369 24 C 0.037 3.963 25 C -0.060 4.060 26 C -0.138 4.138 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.167 0.833 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -5.936 -4.766 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.115 4.115 5 C -0.076 4.076 6 C -0.159 4.159 7 C -0.092 4.092 8 C -0.109 4.109 9 C 0.329 3.671 10 O -0.472 6.472 11 N -0.164 5.164 12 C -0.471 4.471 13 H 0.133 0.867 14 C -0.143 4.143 15 N -0.482 5.482 16 Si 0.686 3.314 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.177 1.177 20 C -0.018 4.018 21 C 0.289 3.711 22 O -0.372 6.372 23 O -0.286 6.286 24 C -0.058 4.058 25 C -0.078 4.078 26 C -0.156 4.156 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.184 0.816 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.084 -5.850 -5.127 7.854 hybrid contribution 0.312 0.698 0.355 0.843 sum -0.772 -5.153 -4.772 7.065 Atomic orbital electron populations 1.21781 0.96048 1.01252 1.01999 1.21547 0.95758 0.97094 1.01755 1.21621 0.94602 0.96351 1.02773 1.20592 0.95465 0.93092 1.02348 1.19951 0.98494 0.95654 0.93467 1.20737 1.03094 0.94917 0.97133 1.21110 0.96657 0.94138 0.97311 1.19737 1.03102 0.94035 0.94023 1.18312 0.81042 0.85395 0.82341 1.90636 1.39356 1.78384 1.38828 1.43213 1.47903 1.03459 1.21826 1.19246 1.13198 1.30957 0.83709 0.86734 1.25383 0.97235 0.96191 0.95538 1.69707 1.32138 1.43122 1.03209 0.87146 0.85412 0.79552 0.79294 1.19463 1.20475 1.17719 1.21381 0.95922 0.83765 1.00741 1.24705 0.88009 0.80634 0.77771 1.90628 1.29459 1.71586 1.45531 1.86518 1.48588 1.22863 1.70645 1.23140 0.90590 0.95681 0.96355 1.22418 0.92357 0.93020 1.00045 1.21021 1.02320 0.95230 0.97023 0.93056 0.92626 0.92795 0.92251 0.92107 0.91535 0.91859 0.91466 0.91254 0.86622 0.86082 0.91086 0.87701 0.86730 0.92171 0.88689 0.92331 0.81604 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.16 5.93 -26.72 -0.16 -1.32 16 3 C -0.12 -1.32 5.20 -26.73 -0.14 -1.45 16 4 C -0.08 -0.92 5.34 -27.88 -0.15 -1.07 16 5 C -0.08 -1.16 5.14 -104.52 -0.54 -1.70 16 6 C -0.14 -2.27 9.68 -39.64 -0.38 -2.65 16 7 C -0.07 -1.40 9.60 -39.17 -0.38 -1.78 16 8 C -0.11 -2.31 5.52 -104.97 -0.58 -2.89 16 9 C 0.54 13.07 7.40 -12.38 -0.09 12.97 16 10 O -0.59 -15.03 16.32 5.29 0.09 -14.95 16 11 N -0.44 -10.79 1.62 -117.22 -0.19 -10.98 16 12 C -0.34 -8.68 6.58 -15.00 -0.10 -8.78 16 13 H 0.12 3.11 6.38 -52.48 -0.33 2.77 16 14 C 0.07 1.62 5.32 -17.45 -0.09 1.53 16 15 N -0.85 -22.10 13.95 55.50 0.77 -21.33 16 16 Si 0.86 18.66 24.92 -169.99 -4.24 14.43 16 17 H -0.27 -5.57 6.73 56.52 0.38 -5.19 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.25 -5.50 7.11 56.52 0.40 -5.10 16 20 C 0.11 2.38 4.80 -5.20 -0.02 2.35 16 21 C 0.45 9.92 8.02 36.01 0.29 10.21 16 22 O -0.49 -12.11 16.18 -18.75 -0.30 -12.41 16 23 O -0.37 -6.87 10.56 -39.25 -0.41 -7.29 16 24 C 0.04 0.53 10.56 101.05 1.07 1.59 16 25 C -0.06 -1.23 7.75 -39.17 -0.30 -1.53 16 26 C -0.14 -2.37 9.68 -39.64 -0.38 -2.76 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.12 2.28 7.96 -52.48 -0.42 1.86 16 38 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.11 2.27 3.39 -51.93 -0.18 2.09 16 40 H 0.11 2.36 7.37 -51.93 -0.38 1.98 16 41 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 44 H 0.17 3.64 5.40 -52.48 -0.28 3.36 16 45 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -30.02 373.43 -6.91 -36.93 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.66 Total: 8.25 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.59 Total: 1.71 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.59 Total: -32.30 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.63 Total: -34.65 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.24 Total: 14.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.02 -6.91 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609991459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.658 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds