Wall clock time and date at job start Tue Mar 31 2020 13:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46749 * 2 1 4 4 C 1.52997 * 109.46839 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.46807 * 180.02562 * 4 3 2 6 6 C 1.38379 * 119.84170 * 270.31700 * 5 4 3 7 7 C 1.37939 * 120.14402 * 180.28301 * 6 5 4 8 8 C 1.39643 * 119.84805 * 359.42100 * 7 6 5 9 9 C 1.47732 * 120.14867 * 180.29872 * 8 7 6 10 10 O 1.21589 * 120.00113 * 327.77124 * 9 8 7 11 11 N 1.34778 * 119.99977 * 147.76405 * 9 8 7 12 12 C 1.36874 * 119.99689 * 3.70403 * 11 9 8 13 13 H 1.08004 * 120.00280 * 319.32837 * 12 11 9 14 14 C 1.39044 * 120.00048 * 139.33157 * 12 11 9 15 15 N 1.31368 * 120.00434 * 161.48809 * 14 12 11 16 16 Si 1.86800 * 119.99933 * 341.48967 * 14 12 11 17 17 H 1.48505 * 109.47169 * 95.26677 * 16 14 12 18 18 H 1.48507 * 109.47154 * 215.26335 * 16 14 12 19 19 H 1.48493 * 109.47229 * 335.26628 * 16 14 12 20 20 C 1.46490 * 120.00427 * 183.69776 * 11 9 8 21 21 C 1.50706 * 109.47067 * 90.00099 * 20 11 9 22 22 O 1.20827 * 119.99540 * 0.02562 * 21 20 11 23 23 O 1.34227 * 120.00156 * 180.02562 * 21 20 11 24 24 C 1.45198 * 117.00094 * 180.02562 * 23 21 20 25 25 C 1.39639 * 119.69895 * 0.28084 * 8 7 6 26 26 C 1.37930 * 119.85095 * 0.02562 * 25 8 7 27 27 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46831 * 299.99691 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99699 * 1 2 3 30 30 H 1.08999 * 109.47228 * 240.00973 * 2 1 3 31 31 H 1.08991 * 109.47531 * 120.00432 * 2 1 3 32 32 H 1.09006 * 109.46859 * 60.00461 * 3 2 1 33 33 H 1.08991 * 109.47457 * 300.00477 * 3 2 1 34 34 H 1.08990 * 109.47596 * 60.00254 * 4 3 2 35 35 H 1.09004 * 109.47080 * 300.00146 * 4 3 2 36 36 H 1.07996 * 119.92964 * 0.02562 * 6 5 4 37 37 H 1.08009 * 120.07420 * 179.69902 * 7 6 5 38 38 H 0.96991 * 120.00597 * 179.97438 * 15 14 12 39 39 H 1.08990 * 109.47782 * 210.00301 * 20 11 9 40 40 H 1.09004 * 109.46902 * 330.00754 * 20 11 9 41 41 H 1.09005 * 109.46861 * 59.99648 * 24 23 21 42 42 H 1.08995 * 109.47334 * 179.97438 * 24 23 21 43 43 H 1.08999 * 109.47299 * 299.99706 * 24 23 21 44 44 H 1.08004 * 120.07663 * 180.02562 * 25 8 7 45 45 H 1.08001 * 119.92989 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 6 4.2949 3.5157 -1.2000 7 6 4.7601 4.8142 -1.2067 8 6 4.9948 5.4747 0.0010 9 6 5.4867 6.8677 0.0016 10 8 6.2179 7.2546 -0.8896 11 7 5.1250 7.7098 0.9898 12 6 4.3643 7.2544 2.0326 13 1 3.5496 6.5697 1.8482 14 6 4.6401 7.6735 3.3294 15 7 3.7294 7.5486 4.2678 16 14 6.3059 8.4141 3.7371 17 1 6.2212 9.8948 3.6614 18 1 6.7044 8.0107 5.1096 19 1 7.3162 7.9257 2.7646 20 6 5.5460 9.1122 0.9480 21 6 4.5094 9.9264 0.2174 22 8 3.5201 9.3900 -0.2227 23 8 4.6850 11.2472 0.0556 24 6 3.6456 11.9680 -0.6575 25 6 4.7619 4.8126 1.2082 26 6 4.3028 3.5120 1.2005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9564 -0.8898 34 1 3.9330 0.9290 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 4.1080 3.0055 -2.1333 37 1 4.9382 5.3205 -2.1441 38 1 3.9220 7.8405 5.1725 39 1 5.6541 9.4897 1.9647 40 1 6.5011 9.1895 0.4283 41 1 2.6997 11.8611 -0.1265 42 1 3.9110 13.0234 -0.7174 43 1 3.5457 11.5605 -1.6635 44 1 4.9410 5.3177 2.1459 45 1 4.1219 2.9988 2.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609991459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:46 Heat of formation + Delta-G solvation = -109.029364 kcal Electronic energy + Delta-G solvation = -26940.565348 eV Core-core repulsion = 23115.773187 eV Total energy + Delta-G solvation = -3824.792161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87409 -40.94926 -39.53288 -37.64556 -36.88295 -36.51396 -34.08936 -33.30952 -31.87858 -30.77435 -29.36044 -27.93103 -27.09893 -25.24996 -23.53217 -22.89399 -22.27729 -21.76831 -21.02848 -19.71439 -19.02378 -18.44692 -17.53949 -17.23167 -17.19797 -16.61656 -16.44280 -16.13945 -15.87130 -15.28379 -15.07893 -14.86663 -14.74175 -14.57334 -14.42594 -14.24474 -14.11962 -13.68364 -13.54427 -13.49572 -13.27655 -13.02088 -12.94323 -12.58087 -12.32209 -12.17560 -11.98619 -11.94431 -11.86293 -11.81011 -11.65096 -11.55593 -11.34107 -11.23159 -10.68447 -9.99495 -9.70422 -9.49950 -8.54118 -6.22208 0.09189 0.59827 1.06651 1.17363 1.31536 1.39643 1.45116 2.00031 2.12356 2.43325 2.78684 3.09506 3.76841 3.82812 3.88346 3.98461 4.00082 4.16761 4.18611 4.21246 4.26677 4.27374 4.27846 4.41629 4.49891 4.61311 4.62554 4.75400 4.82903 4.88063 4.99988 5.06759 5.12730 5.16990 5.20544 5.23771 5.27414 5.35379 5.42805 5.53941 5.55666 5.69282 5.76997 5.96666 6.09030 6.17378 6.66293 6.81692 7.17578 7.52724 8.57266 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.003674 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.838812 B = 7620.304218 C = 8282.568808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.114 4.114 4 C -0.073 4.073 5 C -0.060 4.060 6 C -0.132 4.132 7 C -0.083 4.083 8 C -0.143 4.143 9 C 0.528 3.472 10 O -0.610 6.610 11 N -0.452 5.452 12 C -0.341 4.341 13 H 0.084 0.916 14 C 0.033 3.967 15 N -0.885 5.885 16 Si 0.909 3.091 17 H -0.247 1.247 18 H -0.271 1.271 19 H -0.256 1.256 20 C 0.098 3.902 21 C 0.452 3.548 22 O -0.524 6.524 23 O -0.363 6.363 24 C 0.028 3.972 25 C -0.073 4.073 26 C -0.140 4.140 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.284 0.716 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.056 0.944 42 H 0.143 0.857 43 H 0.058 0.942 44 H 0.142 0.858 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -6.919 -5.388 8.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.152 4.152 4 C -0.110 4.110 5 C -0.061 4.061 6 C -0.149 4.149 7 C -0.102 4.102 8 C -0.146 4.146 9 C 0.321 3.679 10 O -0.497 6.497 11 N -0.172 5.172 12 C -0.468 4.468 13 H 0.102 0.898 14 C -0.173 4.173 15 N -0.520 5.520 16 Si 0.732 3.268 17 H -0.173 1.173 18 H -0.197 1.197 19 H -0.180 1.180 20 C -0.026 4.026 21 C 0.294 3.706 22 O -0.412 6.412 23 O -0.279 6.279 24 C -0.065 4.065 25 C -0.092 4.092 26 C -0.158 4.158 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.170 0.830 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.147 0.853 41 H 0.075 0.925 42 H 0.161 0.839 43 H 0.077 0.923 44 H 0.160 0.840 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.743 -6.803 -5.743 8.934 hybrid contribution 0.122 0.981 0.469 1.094 sum -0.621 -5.823 -5.273 7.880 Atomic orbital electron populations 1.21799 0.95961 1.01976 1.01565 1.21514 0.95826 0.95615 1.02725 1.21592 0.94128 0.97701 1.01781 1.20672 0.95631 0.90490 1.04248 1.20384 0.96024 0.97323 0.92342 1.21119 1.01225 0.93595 0.99011 1.21244 0.97261 0.95496 0.96242 1.19777 1.05898 0.93322 0.95586 1.18843 0.80635 0.86517 0.81907 1.90584 1.40434 1.79157 1.39498 1.43259 1.47783 1.04435 1.21683 1.18934 1.12425 1.30928 0.84543 0.89833 1.25872 0.99898 0.96555 0.94964 1.69769 1.33806 1.44677 1.03772 0.86364 0.81266 0.80031 0.79140 1.17284 1.19695 1.17995 1.21507 0.96646 0.83000 1.01477 1.24582 0.87186 0.81787 0.77090 1.90610 1.30804 1.72578 1.47187 1.86486 1.49802 1.20974 1.70679 1.23576 0.89682 0.97547 0.95732 1.22182 0.93918 0.94469 0.98610 1.21249 1.01575 0.94131 0.98884 0.91774 0.93393 0.92973 0.90937 0.91442 0.93148 0.92378 0.89120 0.89871 0.82983 0.86334 0.90552 0.87031 0.85341 0.92476 0.83941 0.92273 0.84040 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.12 -1.88 5.93 30.60 0.18 -1.70 16 3 C -0.11 -2.32 5.20 30.60 0.16 -2.16 16 4 C -0.07 -1.50 5.34 29.85 0.16 -1.34 16 5 C -0.06 -1.75 5.14 -19.80 -0.10 -1.85 16 6 C -0.13 -4.01 9.68 22.23 0.22 -3.80 16 7 C -0.08 -3.23 9.60 22.54 0.22 -3.01 16 8 C -0.14 -6.47 5.52 -20.09 -0.11 -6.58 16 9 C 0.53 26.71 7.40 86.75 0.64 27.36 16 10 O -0.61 -32.21 16.32 -3.99 -0.07 -32.28 16 11 N -0.45 -22.71 1.62 -643.02 -1.04 -23.74 16 12 C -0.34 -17.98 6.58 84.10 0.55 -17.43 16 13 H 0.08 4.85 6.38 -2.91 -0.02 4.83 16 14 C 0.03 1.67 5.32 84.96 0.45 2.12 16 15 N -0.88 -47.32 13.95 21.68 0.30 -47.02 16 16 Si 0.91 38.42 24.92 68.60 1.71 40.13 16 17 H -0.25 -9.61 6.73 99.48 0.67 -8.94 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 20 C 0.10 4.40 4.80 85.64 0.41 4.81 16 21 C 0.45 20.14 8.02 71.24 0.57 20.71 16 22 O -0.52 -26.72 16.18 21.96 0.36 -26.37 16 23 O -0.36 -13.13 10.56 -51.39 -0.54 -13.67 16 24 C 0.03 0.75 10.56 113.37 1.20 1.95 16 25 C -0.07 -3.11 7.75 22.54 0.17 -2.94 16 26 C -0.14 -4.80 9.68 22.23 0.22 -4.59 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 35 H 0.08 1.53 8.08 -2.38 -0.02 1.51 16 36 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.12 4.54 7.96 -2.91 -0.02 4.52 16 38 H 0.28 14.01 8.31 -92.72 -0.77 13.24 16 39 H 0.11 4.78 3.39 -2.39 -0.01 4.78 16 40 H 0.13 5.32 7.37 -2.39 -0.02 5.31 16 41 H 0.06 1.60 8.13 -2.38 -0.02 1.58 16 42 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 44 H 0.14 6.63 5.40 -2.91 -0.02 6.62 16 45 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -67.74 373.43 7.32 -60.42 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.95 Total: 32.72 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.65 Total: 9.81 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.74 Total: -70.76 kcal Atomic # 8 Polarization: -72.06 SS G_CDS: -0.25 Total: -72.31 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.71 Total: 40.13 kcal Total: -67.74 7.32 -60.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609991459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.612 kcal (2) G-P(sol) polarization free energy of solvation -67.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds