Wall clock time and date at job start Tue Mar 31 2020 12:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40396 * 107.86945 * 179.88542 * 3 2 1 5 5 N 1.40196 * 125.97439 * 180.17767 * 4 3 2 6 6 C 1.34772 * 120.00000 * 0.27024 * 5 4 3 7 7 O 1.21595 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00026 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47077 * 180.02562 * 9 8 6 11 11 N 1.33242 * 125.52515 * 90.02472 * 10 9 8 12 12 C 1.30827 * 109.82899 * 180.02562 * 11 10 9 13 13 N 1.34432 * 108.07715 * 359.97438 * 12 11 10 14 14 C 1.46500 * 126.82083 * 179.97438 * 13 12 11 15 15 N 1.30709 * 125.52591 * 269.72348 * 10 9 8 16 16 N 1.31217 * 108.05370 * 0.38247 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46496 * 125.97396 * 359.97438 * 17 2 1 19 19 C 1.50702 * 109.47079 * 90.00325 * 18 17 2 20 20 H 1.08002 * 120.00024 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00327 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99450 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00465 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46886 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47412 * 119.99720 * 23 21 19 26 26 H 1.48502 * 109.47173 * 239.99978 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08001 * 126.06108 * 0.02728 * 3 2 1 31 31 H 0.97004 * 120.00062 * 180.27001 * 5 4 3 32 32 H 0.97004 * 119.99904 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.47274 * 299.99650 * 9 8 6 34 34 H 1.08998 * 109.47280 * 60.00233 * 9 8 6 35 35 H 1.08004 * 125.96488 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.47415 * 90.00741 * 14 13 12 37 37 H 1.09002 * 109.46894 * 210.00236 * 14 13 12 38 38 H 1.08998 * 109.47586 * 329.99641 * 14 13 12 39 39 H 1.08997 * 109.47352 * 209.99655 * 18 17 2 40 40 H 1.09001 * 109.47699 * 330.00018 * 18 17 2 41 41 H 0.97001 * 120.00075 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6546 0.0027 5 7 4.7738 1.4751 0.0071 6 6 4.6371 2.8159 0.0146 7 8 3.5278 3.3139 0.0171 8 7 5.7298 3.6047 0.0183 9 6 5.5811 5.0621 0.0259 10 6 6.9437 5.7061 0.0281 11 7 7.6426 6.0429 -1.0551 12 6 8.7819 6.5786 -0.6994 13 7 8.8336 6.5952 0.6438 14 6 9.9272 7.1060 1.4741 15 7 7.6290 6.0298 1.0930 16 7 3.6337 -0.6576 -0.0041 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4845 -0.0130 19 6 1.6948 -2.9550 -1.4363 20 1 1.9105 -2.2830 -2.2538 21 6 1.2773 -4.2434 -1.6948 22 7 1.0151 -5.0619 -0.6994 23 14 1.0841 -4.8264 -3.4590 24 1 1.4382 -3.7223 -4.3867 25 1 1.9836 -5.9832 -3.6994 26 1 -0.3237 -5.2369 -3.6933 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1211 0.0004 31 1 5.6588 1.0779 0.0047 32 1 6.6148 3.2074 0.0159 33 1 5.0328 5.3761 -0.8623 34 1 5.0334 5.3668 0.9177 35 1 9.5470 6.9445 -1.3681 36 1 9.7602 8.1621 1.6855 37 1 9.9630 6.5493 2.4106 38 1 10.8722 6.9865 0.9442 39 1 2.5849 -3.1072 0.4972 40 1 0.8916 -2.5586 0.5008 41 1 0.7218 -5.9684 -0.8812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611481772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:03 Heat of formation + Delta-G solvation = 150.086135 kcal Electronic energy + Delta-G solvation = -25116.098267 eV Core-core repulsion = 21263.587356 eV Total energy + Delta-G solvation = -3852.510911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58308 -40.69124 -39.53620 -35.72600 -34.68634 -34.08263 -33.30037 -31.83426 -31.30174 -30.73640 -28.79489 -26.78145 -26.30054 -25.99100 -23.05217 -22.58366 -21.67478 -21.06143 -19.84654 -19.54125 -17.97202 -17.27700 -16.66563 -16.63960 -16.18268 -15.89846 -15.46355 -15.25580 -14.77254 -14.54150 -14.27662 -14.00301 -13.91173 -13.65876 -13.12774 -13.09152 -12.90126 -12.43497 -12.29117 -12.25154 -12.06275 -11.61357 -11.35527 -11.03147 -10.82328 -10.48695 -10.37267 -10.30146 -10.26107 -10.16774 -9.91327 -9.59972 -9.47747 -9.23936 -8.61218 -7.84614 -7.33981 -6.21694 -4.29046 1.05214 1.77186 2.10786 2.69781 2.74380 3.15394 3.23137 3.30985 3.37546 3.57774 3.74266 3.88585 3.93234 4.26046 4.30874 4.40999 4.51904 4.66679 4.80500 5.11781 5.28947 5.38480 5.50577 5.72151 5.78169 5.87096 6.00653 6.16196 6.19670 6.25910 6.28261 6.55715 6.63304 6.70480 7.01183 7.10042 7.17454 7.58731 7.59883 7.71840 7.93493 7.98431 8.13554 8.62379 8.73533 8.81593 9.37219 10.85404 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.026263 B = 0.002079 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.901987 B =13464.761912 C =13856.136241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.288 4.288 4 C 0.283 3.717 5 N -0.642 5.642 6 C 0.719 3.281 7 O -0.564 6.564 8 N -0.739 5.739 9 C 0.240 3.760 10 C 0.208 3.792 11 N -0.530 5.530 12 C 0.255 3.745 13 N -0.383 5.383 14 C 0.095 3.905 15 N -0.296 5.296 16 N -0.324 5.324 17 N -0.319 5.319 18 C 0.258 3.742 19 C -0.534 4.534 20 H 0.065 0.935 21 C 0.064 3.936 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.281 1.281 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.406 0.594 32 H 0.398 0.602 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.482 23.924 3.655 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.319 4.319 4 C 0.029 3.971 5 N -0.292 5.292 6 C 0.418 3.582 7 O -0.439 6.439 8 N -0.397 5.397 9 C 0.113 3.887 10 C -0.075 4.075 11 N -0.257 5.257 12 C -0.042 4.042 13 N -0.174 5.174 14 C -0.047 4.047 15 N -0.126 5.126 16 N -0.155 5.155 17 N -0.101 5.101 18 C 0.141 3.859 19 C -0.573 4.573 20 H 0.083 0.917 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.207 1.207 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.178 0.822 31 H 0.241 0.759 32 H 0.232 0.768 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.238 0.762 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.798 22.926 4.154 28.150 hybrid contribution 0.974 0.033 -0.983 1.384 sum 16.771 22.958 3.171 28.608 Atomic orbital electron populations 1.20371 0.87978 1.03823 1.02473 1.21057 0.94881 0.87138 1.00995 1.21246 0.89669 0.99864 1.21135 1.18643 0.86498 0.89231 1.02689 1.41330 1.07671 1.03597 1.76595 1.15450 0.84351 0.80402 0.78033 1.90887 1.23311 1.73425 1.56235 1.44806 1.08023 1.05522 1.81308 1.19175 0.87033 0.77639 1.04817 1.24159 0.98012 0.99480 0.85828 1.70467 1.04772 1.19485 1.30931 1.26134 0.97071 0.96912 0.84109 1.50479 1.14759 1.45623 1.06547 1.22011 0.85994 1.00379 0.96316 1.78116 0.93855 1.18099 1.22538 1.77244 0.99969 1.08326 1.29938 1.48951 1.00880 1.07710 1.52572 1.19671 0.95948 0.71445 0.98867 1.21388 1.46483 0.97926 0.91467 0.91661 1.24935 0.94755 0.96079 0.98104 1.69933 1.45143 1.06894 1.31056 0.86307 0.77827 0.78770 0.83830 1.19554 1.20710 1.20670 0.91141 0.89978 0.90613 0.82155 0.75919 0.76837 0.88335 0.88846 0.76165 0.89978 0.88784 0.88641 0.93055 0.92805 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.89 36.01 0.36 -1.20 16 2 C 0.09 1.97 6.93 -82.28 -0.57 1.40 16 3 C -0.29 -6.14 9.52 -39.84 -0.38 -6.52 16 4 C 0.28 5.97 8.11 -154.36 -1.25 4.72 16 5 N -0.64 -10.53 5.45 -15.51 -0.08 -10.62 16 6 C 0.72 11.20 8.53 -86.93 -0.74 10.45 16 7 O -0.56 -10.53 13.47 5.28 0.07 -10.46 16 8 N -0.74 -8.55 5.55 -66.41 -0.37 -8.91 16 9 C 0.24 2.60 6.30 -5.19 -0.03 2.56 16 10 C 0.21 2.18 7.51 -156.85 -1.18 1.00 16 11 N -0.53 -5.27 11.19 -11.97 -0.13 -5.41 16 12 C 0.25 1.58 12.66 -90.66 -1.15 0.43 16 13 N -0.38 -2.52 4.04 -69.44 -0.28 -2.80 16 14 C 0.10 0.18 11.53 59.85 0.69 0.87 16 15 N -0.30 -3.01 12.70 32.42 0.41 -2.60 16 16 N -0.32 -7.68 12.59 31.44 0.40 -7.29 16 17 N -0.32 -7.74 3.59 -58.33 -0.21 -7.95 16 18 C 0.26 6.74 5.81 -5.20 -0.03 6.71 16 19 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 20 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 23 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.16 3.35 5.91 -52.49 -0.31 3.04 16 31 H 0.41 5.41 8.84 -40.82 -0.36 5.05 16 32 H 0.40 3.82 8.48 -40.82 -0.35 3.48 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.22 0.27 8.06 -52.48 -0.42 -0.15 16 36 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 39 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.05 1.39 7.65 -51.93 -0.40 0.99 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -36.97 362.26 -8.89 -45.86 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.16 Total: 6.09 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -4.71 Total: 6.86 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: 0.47 Total: -70.17 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.97 -8.89 -45.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.949 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds