Wall clock time and date at job start Tue Mar 31 2020 12:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40396 * 107.86945 * 179.88542 * 3 2 1 5 5 N 1.40196 * 125.97439 * 180.17767 * 4 3 2 6 6 C 1.34772 * 120.00000 * 0.27024 * 5 4 3 7 7 O 1.21595 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00026 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47077 * 180.02562 * 9 8 6 11 11 N 1.33242 * 125.52515 * 90.02472 * 10 9 8 12 12 C 1.30827 * 109.82899 * 180.02562 * 11 10 9 13 13 N 1.34432 * 108.07715 * 359.97438 * 12 11 10 14 14 C 1.46500 * 126.82083 * 179.97438 * 13 12 11 15 15 N 1.30709 * 125.52591 * 269.72348 * 10 9 8 16 16 N 1.31217 * 108.05370 * 0.38247 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46496 * 125.97396 * 359.97438 * 17 2 1 19 19 C 1.50702 * 109.47079 * 90.00325 * 18 17 2 20 20 H 1.08002 * 120.00024 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00327 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99450 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00465 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46886 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47412 * 119.99720 * 23 21 19 26 26 H 1.48502 * 109.47173 * 239.99978 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08001 * 126.06108 * 0.02728 * 3 2 1 31 31 H 0.97004 * 120.00062 * 180.27001 * 5 4 3 32 32 H 0.97004 * 119.99904 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.47274 * 299.99650 * 9 8 6 34 34 H 1.08998 * 109.47280 * 60.00233 * 9 8 6 35 35 H 1.08004 * 125.96488 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.47415 * 90.00741 * 14 13 12 37 37 H 1.09002 * 109.46894 * 210.00236 * 14 13 12 38 38 H 1.08998 * 109.47586 * 329.99641 * 14 13 12 39 39 H 1.08997 * 109.47352 * 209.99655 * 18 17 2 40 40 H 1.09001 * 109.47699 * 330.00018 * 18 17 2 41 41 H 0.97001 * 120.00075 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6546 0.0027 5 7 4.7738 1.4751 0.0071 6 6 4.6371 2.8159 0.0146 7 8 3.5278 3.3139 0.0171 8 7 5.7298 3.6047 0.0183 9 6 5.5811 5.0621 0.0259 10 6 6.9437 5.7061 0.0281 11 7 7.6426 6.0429 -1.0551 12 6 8.7819 6.5786 -0.6994 13 7 8.8336 6.5952 0.6438 14 6 9.9272 7.1060 1.4741 15 7 7.6290 6.0298 1.0930 16 7 3.6337 -0.6576 -0.0041 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4845 -0.0130 19 6 1.6948 -2.9550 -1.4363 20 1 1.9105 -2.2830 -2.2538 21 6 1.2773 -4.2434 -1.6948 22 7 1.0151 -5.0619 -0.6994 23 14 1.0841 -4.8264 -3.4590 24 1 1.4382 -3.7223 -4.3867 25 1 1.9836 -5.9832 -3.6994 26 1 -0.3237 -5.2369 -3.6933 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1211 0.0004 31 1 5.6588 1.0779 0.0047 32 1 6.6148 3.2074 0.0159 33 1 5.0328 5.3761 -0.8623 34 1 5.0334 5.3668 0.9177 35 1 9.5470 6.9445 -1.3681 36 1 9.7602 8.1621 1.6855 37 1 9.9630 6.5493 2.4106 38 1 10.8722 6.9865 0.9442 39 1 2.5849 -3.1072 0.4972 40 1 0.8916 -2.5586 0.5008 41 1 0.7218 -5.9684 -0.8812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611481772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:01 Heat of formation + Delta-G solvation = 124.194721 kcal Electronic energy + Delta-G solvation = -25117.221003 eV Core-core repulsion = 21263.587356 eV Total energy + Delta-G solvation = -3853.633647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.16649 -42.29189 -40.92871 -36.77088 -36.10677 -35.30701 -34.71247 -33.03768 -32.61656 -32.31378 -29.57578 -28.42994 -27.83553 -26.88135 -24.95376 -23.05858 -23.04016 -21.87201 -21.28607 -21.10759 -19.23394 -18.76465 -18.00126 -17.66198 -17.26236 -16.94550 -16.91042 -16.30529 -16.15163 -15.83477 -15.75934 -15.52941 -14.63579 -14.46199 -14.35339 -14.06200 -13.94341 -13.77870 -13.73637 -13.55919 -13.51804 -13.12587 -12.81212 -12.73469 -12.67864 -12.25681 -12.07684 -11.58370 -11.33584 -11.21937 -11.11634 -10.91730 -10.72406 -10.59877 -10.33792 -9.54261 -9.06675 -8.31165 -6.48779 0.43563 1.02270 1.07661 1.37806 1.39323 1.41077 1.52294 1.66450 1.74801 2.19997 2.36732 2.38489 2.97777 2.98465 3.16069 3.47399 3.88086 3.96899 4.18242 4.24982 4.44280 4.45599 4.51318 4.68368 4.73346 4.79277 4.80857 4.89433 4.98306 5.02944 5.10407 5.13463 5.20685 5.24828 5.36117 5.55780 5.78895 5.83248 5.88595 5.98291 6.29827 6.62887 6.69453 7.01132 7.11585 7.22132 7.35610 8.74675 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.026263 B = 0.002079 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.901987 B =13464.761912 C =13856.136241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.088 3.912 3 C -0.297 4.297 4 C 0.292 3.708 5 N -0.634 5.634 6 C 0.720 3.280 7 O -0.594 6.594 8 N -0.717 5.717 9 C 0.243 3.757 10 C 0.198 3.802 11 N -0.567 5.567 12 C 0.265 3.735 13 N -0.380 5.380 14 C 0.086 3.914 15 N -0.327 5.327 16 N -0.360 5.360 17 N -0.343 5.343 18 C 0.275 3.725 19 C -0.551 4.551 20 H 0.049 0.951 21 C 0.022 3.978 22 N -0.918 5.918 23 Si 0.972 3.028 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.267 1.267 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.168 0.832 31 H 0.421 0.579 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.269 0.731 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.131 0.869 39 H 0.024 0.976 40 H 0.053 0.947 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.869 25.465 2.826 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.328 4.328 4 C 0.037 3.963 5 N -0.286 5.286 6 C 0.419 3.581 7 O -0.471 6.471 8 N -0.375 5.375 9 C 0.116 3.884 10 C -0.085 4.085 11 N -0.295 5.295 12 C -0.031 4.031 13 N -0.171 5.171 14 C -0.054 4.054 15 N -0.158 5.158 16 N -0.191 5.191 17 N -0.126 5.126 18 C 0.156 3.844 19 C -0.590 4.590 20 H 0.067 0.933 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.185 0.815 31 H 0.258 0.742 32 H 0.246 0.754 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.285 0.715 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.150 0.850 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.258 24.508 3.351 30.161 hybrid contribution 0.702 -0.267 -0.660 1.000 sum 17.961 24.241 2.690 30.290 Atomic orbital electron populations 1.20500 0.85322 1.04384 1.04107 1.21748 0.96681 0.86386 0.99455 1.21419 0.89865 0.99985 1.21525 1.18916 0.87951 0.88888 1.00508 1.41302 1.07200 1.03649 1.76445 1.15534 0.84772 0.80087 0.77713 1.90856 1.24811 1.73818 1.57605 1.44640 1.07497 1.05706 1.79616 1.19129 0.87997 0.76724 1.04506 1.23892 0.97907 1.00349 0.86368 1.70416 1.06427 1.21186 1.31462 1.27005 0.96685 0.94967 0.84434 1.50758 1.14296 1.44673 1.07334 1.22419 0.85947 1.00797 0.96229 1.78008 0.95517 1.19082 1.23188 1.77165 1.00137 1.09690 1.32096 1.48760 1.01618 1.07481 1.54717 1.19246 0.94928 0.72449 0.97754 1.21477 1.47359 0.98342 0.91798 0.93290 1.25734 0.94002 0.95902 1.02247 1.70010 1.45220 1.07373 1.33023 0.85302 0.78474 0.78056 0.78602 1.19910 1.19972 1.19166 0.88875 0.91402 0.87940 0.81480 0.74226 0.75448 0.88776 0.89027 0.71510 0.88676 0.89263 0.85042 0.95745 0.92943 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 9.89 71.24 0.70 -2.23 16 2 C 0.09 3.82 6.93 41.39 0.29 4.11 16 3 C -0.30 -12.67 9.52 22.10 0.21 -12.46 16 4 C 0.29 12.42 8.11 133.31 1.08 13.50 16 5 N -0.63 -20.64 5.45 -321.23 -1.75 -22.39 16 6 C 0.72 22.15 8.53 179.06 1.53 23.68 16 7 O -0.59 -22.08 13.47 -4.02 -0.05 -22.13 16 8 N -0.72 -16.20 5.55 -482.29 -2.68 -18.88 16 9 C 0.24 5.22 6.30 85.63 0.54 5.76 16 10 C 0.20 4.01 7.51 138.63 1.04 5.05 16 11 N -0.57 -10.53 11.19 -191.80 -2.15 -12.67 16 12 C 0.26 2.58 12.66 180.36 2.28 4.87 16 13 N -0.38 -4.17 4.04 -373.62 -1.51 -5.68 16 14 C 0.09 0.08 11.53 127.77 1.47 1.56 16 15 N -0.33 -6.35 12.70 -51.33 -0.65 -7.00 16 16 N -0.36 -17.46 12.59 -54.43 -0.69 -18.15 16 17 N -0.34 -17.09 3.59 -338.45 -1.22 -18.30 16 18 C 0.28 14.84 5.81 85.63 0.50 15.34 16 19 C -0.55 -31.47 9.39 25.60 0.24 -31.23 16 20 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 21 C 0.02 1.22 5.46 84.66 0.46 1.68 16 22 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 23 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.07 2.54 7.71 -2.39 -0.02 2.52 16 29 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 30 H 0.17 6.92 5.91 -2.91 -0.02 6.90 16 31 H 0.42 11.00 8.84 -92.71 -0.82 10.18 16 32 H 0.41 7.50 8.48 -92.71 -0.79 6.71 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 35 H 0.27 -0.48 8.06 -2.91 -0.02 -0.51 16 36 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 2.79 7.65 -2.39 -0.02 2.77 16 41 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -81.44 362.26 1.46 -79.98 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.51 Total: 21.92 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 10.35 Total: 29.63 kcal Atomic # 7 Polarization: -144.84 SS G_CDS: -10.35 Total: -155.19 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -81.44 1.46 -79.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.179 kcal (2) G-P(sol) polarization free energy of solvation -81.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds