Wall clock time and date at job start Tue Mar 31 2020 12:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38240 * 119.99645 * 0.50240 * 5 4 3 7 7 C 1.50698 * 119.99659 * 179.72727 * 6 5 4 8 8 H 1.09003 * 109.47112 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47243 * 300.02211 * 7 6 5 10 10 C 1.50701 * 109.47227 * 60.02410 * 7 6 5 11 11 O 1.20827 * 120.00002 * 359.97438 * 10 7 6 12 12 O 1.34231 * 120.00009 * 179.97438 * 10 7 6 13 13 C 1.45199 * 117.00158 * 180.02562 * 12 10 7 14 14 C 1.50701 * 109.47232 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99839 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99812 * 180.02562 * 14 13 12 17 17 C 1.46504 * 119.99727 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.46825 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00374 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99830 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00039 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00120 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47075 * 60.00064 * 22 20 18 24 24 H 1.48499 * 109.47137 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46883 * 300.00255 * 22 20 18 26 26 C 1.38227 * 120.00205 * 359.74956 * 6 5 4 27 27 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99843 * 180.23314 * 5 4 3 35 35 H 1.08997 * 109.47497 * 300.00215 * 9 7 6 36 36 H 1.09003 * 109.47008 * 60.00008 * 9 7 6 37 37 H 1.09000 * 109.47333 * 180.02562 * 9 7 6 38 38 H 1.09005 * 109.46491 * 299.99987 * 13 12 10 39 39 H 1.08996 * 109.47320 * 59.99493 * 13 12 10 40 40 H 0.96999 * 120.00212 * 359.97438 * 16 14 13 41 41 H 1.08998 * 109.47170 * 299.99670 * 17 16 14 42 42 H 1.09004 * 109.47318 * 60.00054 * 17 16 14 43 43 H 0.96994 * 119.99861 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.00251 * 179.97438 * 26 6 5 45 45 H 1.07998 * 120.00407 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 -0.0001 8 1 3.5791 5.7902 1.0276 9 6 4.8055 5.5113 -0.7214 10 6 2.4656 6.3320 -0.7104 11 8 1.4539 5.8574 -1.1700 12 8 2.7057 7.6470 -0.8327 13 6 1.7063 8.4378 -1.5283 14 6 2.1445 9.8792 -1.5679 15 8 3.1953 10.2076 -1.0594 16 7 1.3680 10.8033 -2.1675 17 6 1.7942 12.2044 -2.2064 18 6 0.7568 13.0251 -2.9284 19 1 -0.1310 12.5506 -3.3195 20 6 0.9410 14.3820 -3.0896 21 7 2.0224 14.9599 -2.6138 22 14 -0.3452 15.3996 -3.9838 23 1 -1.6428 15.2962 -3.2691 24 1 0.0869 16.8197 -4.0234 25 1 -0.5020 14.8915 -5.3704 26 6 2.7238 3.3757 1.1971 27 6 2.2627 2.0725 1.1971 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9047 3.8844 -2.1326 35 1 5.5231 4.8717 -0.2076 36 1 4.6841 5.1688 -1.7490 37 1 5.1697 6.5387 -0.7210 38 1 1.5921 8.0650 -2.5463 39 1 0.7535 8.3616 -1.0046 40 1 0.5273 10.5406 -2.5738 41 1 1.9095 12.5775 -1.1888 42 1 2.7466 12.2800 -2.7313 43 1 2.1522 15.9144 -2.7276 44 1 2.9042 3.8847 2.1324 45 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727916524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:08 Heat of formation + Delta-G solvation = -137.579140 kcal Electronic energy + Delta-G solvation = -25391.678823 eV Core-core repulsion = 21565.648650 eV Total energy + Delta-G solvation = -3826.030172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98901 -40.66303 -40.08994 -37.64681 -36.19835 -36.16197 -34.42684 -33.64343 -31.83676 -30.85340 -29.49774 -28.51182 -26.05294 -24.83662 -24.15080 -23.69594 -22.19721 -21.65921 -21.03283 -19.25043 -18.78147 -17.99463 -17.86781 -17.18654 -17.12191 -16.84559 -16.43222 -16.14531 -16.07361 -15.66274 -14.91952 -14.75505 -14.59790 -14.52300 -14.20622 -14.09587 -14.06790 -13.89123 -13.80522 -13.61006 -13.20718 -12.96671 -12.81152 -12.68994 -12.57792 -12.37821 -12.24832 -12.06694 -11.92092 -11.71893 -11.64962 -11.53687 -11.44968 -10.91997 -10.81346 -9.94417 -9.79070 -9.47836 -8.30056 -6.46882 0.30989 0.52915 1.05473 1.29697 1.44354 1.47328 1.53668 1.55902 2.33172 2.54312 2.87189 3.04958 3.43031 3.61618 3.73467 3.89156 3.95059 4.01860 4.03514 4.06494 4.13152 4.20798 4.38611 4.52088 4.57062 4.65836 4.71661 4.80430 4.85867 5.04906 5.05799 5.08867 5.11153 5.17110 5.20952 5.22657 5.28546 5.39118 5.40563 5.50899 5.61838 5.64818 5.74096 5.81183 6.11016 6.56111 6.61880 6.77091 7.19297 7.34201 8.81720 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.001927 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.754740 B =14524.959100 C =15152.596680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.084 4.084 4 C -0.131 4.131 5 C -0.098 4.098 6 C -0.095 4.095 7 C -0.036 4.036 8 H 0.135 0.865 9 C -0.139 4.139 10 C 0.465 3.535 11 O -0.520 6.520 12 O -0.344 6.344 13 C 0.060 3.940 14 C 0.500 3.500 15 O -0.582 6.582 16 N -0.699 5.699 17 C 0.266 3.734 18 C -0.559 4.559 19 H 0.086 0.914 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.985 3.015 23 H -0.263 1.263 24 H -0.286 1.286 25 H -0.263 1.263 26 C -0.110 4.110 27 C -0.126 4.126 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.412 0.588 41 H -0.007 1.007 42 H -0.007 1.007 43 H 0.269 0.731 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -30.982 5.567 31.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.149 4.149 5 C -0.116 4.116 6 C -0.095 4.095 7 C -0.054 4.054 8 H 0.153 0.847 9 C -0.196 4.196 10 C 0.309 3.691 11 O -0.408 6.408 12 O -0.260 6.260 13 C -0.017 4.017 14 C 0.286 3.714 15 O -0.463 6.463 16 N -0.351 5.351 17 C 0.144 3.856 18 C -0.597 4.597 19 H 0.103 0.897 20 C -0.195 4.195 21 N -0.567 5.567 22 Si 0.808 3.192 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.187 1.187 26 C -0.128 4.128 27 C -0.144 4.144 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.248 0.752 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.078 0.922 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.356 -30.677 5.784 31.219 hybrid contribution -0.779 1.104 -0.703 1.523 sum -1.135 -29.573 5.081 30.027 Atomic orbital electron populations 1.21742 0.94598 1.02364 1.01681 1.20593 0.96198 0.91436 1.03818 1.20229 0.97881 0.97296 0.93009 1.21184 1.00460 0.94636 0.98577 1.20995 0.98212 0.94899 0.97453 1.19357 1.02145 0.93560 0.94401 1.20053 0.93629 0.89443 1.02308 0.84689 1.21807 0.93399 1.03891 1.00518 1.24298 0.86864 0.80814 0.77165 1.90668 1.28670 1.75171 1.46329 1.86567 1.48287 1.20961 1.70148 1.22719 0.91770 0.86729 1.00514 1.20664 0.84317 0.87879 0.78546 1.90682 1.25419 1.82550 1.47604 1.46052 1.24004 1.08667 1.56331 1.18633 0.95083 0.76642 0.95224 1.21583 1.06571 0.93665 1.37874 0.89650 1.26051 0.98112 0.99158 0.96167 1.70124 1.28562 1.11974 1.46065 0.85201 0.78287 0.76688 0.79003 1.18710 1.21105 1.18714 1.21267 0.98609 0.95419 0.97465 1.21256 0.99985 0.94746 0.98437 0.91005 0.92967 0.93484 0.89752 0.90315 0.85099 0.87006 0.88751 0.92095 0.91270 0.86061 0.86097 0.75176 0.98914 0.98913 0.92187 0.84022 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.08 -0.88 6.07 29.85 0.18 -0.70 16 3 C -0.08 -1.30 5.13 -19.87 -0.10 -1.41 16 4 C -0.13 -2.32 9.70 22.27 0.22 -2.11 16 5 C -0.10 -1.99 7.93 22.27 0.18 -1.81 16 6 C -0.09 -1.84 4.40 -19.87 -0.09 -1.92 16 7 C -0.04 -0.69 3.01 -12.29 -0.04 -0.73 16 8 H 0.14 2.11 7.88 -2.39 -0.02 2.09 16 9 C -0.14 -2.38 8.94 71.98 0.64 -1.73 16 10 C 0.46 12.22 7.13 71.24 0.51 12.73 16 11 O -0.52 -15.42 14.86 21.96 0.33 -15.09 16 12 O -0.34 -10.55 9.66 -45.07 -0.44 -10.98 16 13 C 0.06 1.75 5.94 71.24 0.42 2.17 16 14 C 0.50 20.17 7.91 87.66 0.69 20.86 16 15 O -0.58 -29.27 16.50 15.77 0.26 -29.01 16 16 N -0.70 -29.04 5.55 -466.78 -2.59 -31.63 16 17 C 0.27 14.42 5.43 85.63 0.46 14.89 16 18 C -0.56 -29.97 9.28 25.60 0.24 -29.74 16 19 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 20 C 0.01 0.28 5.46 84.65 0.46 0.74 16 21 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 22 Si 0.99 41.87 29.54 68.60 2.03 43.89 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 C -0.11 -1.80 9.67 22.27 0.22 -1.58 16 27 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 32 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.11 2.34 7.52 -2.91 -0.02 2.32 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.05 7.39 -2.39 -0.02 1.03 16 37 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 38 H 0.12 2.99 8.13 -2.38 -0.02 2.97 16 39 H 0.12 3.00 8.13 -2.39 -0.02 2.98 16 40 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 43 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 44 H 0.14 1.69 7.95 -2.91 -0.02 1.67 16 45 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -74.47 386.77 5.01 -69.46 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.21 Total: 21.39 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.92 Total: 7.12 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -2.30 Total: -86.77 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: 0.15 Total: -55.09 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -74.47 5.01 -69.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727916524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.117 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds