Wall clock time and date at job start Tue Mar 31 2020 12:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38234 * 119.99846 * 0.50808 * 5 4 3 7 7 C 1.50704 * 120.00467 * 179.72287 * 6 5 4 8 8 H 1.08994 * 109.47182 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46631 * 60.02103 * 7 6 5 10 10 C 1.50701 * 109.46767 * 300.02404 * 7 6 5 11 11 O 1.20825 * 120.00290 * 359.97438 * 10 7 6 12 12 O 1.34234 * 119.99577 * 179.97438 * 10 7 6 13 13 C 1.45198 * 116.99652 * 180.02562 * 12 10 7 14 14 C 1.50697 * 109.46920 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00307 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99888 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99649 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46734 * 180.02562 * 17 16 14 19 19 H 1.08006 * 120.00209 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00136 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99727 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47283 * 59.99459 * 22 20 18 24 24 H 1.48497 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46820 * 299.99359 * 22 20 18 26 26 C 1.38241 * 119.99835 * 359.74567 * 6 5 4 27 27 C 1.38230 * 119.99983 * 0.02562 * 26 6 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 33 33 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00386 * 180.23261 * 5 4 3 35 35 H 1.09004 * 109.46829 * 300.00257 * 9 7 6 36 36 H 1.08993 * 109.47018 * 60.00417 * 9 7 6 37 37 H 1.09003 * 109.46922 * 180.02562 * 9 7 6 38 38 H 1.08995 * 109.47189 * 299.99692 * 13 12 10 39 39 H 1.09000 * 109.47320 * 59.99839 * 13 12 10 40 40 H 0.96995 * 119.99819 * 0.02562 * 16 14 13 41 41 H 1.09004 * 109.47083 * 299.99661 * 17 16 14 42 42 H 1.09000 * 109.47370 * 60.00023 * 17 16 14 43 43 H 0.97001 * 120.00159 * 180.02562 * 21 20 18 44 44 H 1.07999 * 119.99721 * 179.97438 * 26 6 5 45 45 H 1.08007 * 119.99843 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9548 4.0270 0.0000 7 6 3.4581 5.4476 0.0001 8 1 3.5795 5.7899 1.0278 9 6 2.4508 6.3455 -0.7211 10 6 4.7856 5.5101 -0.7103 11 8 5.2733 4.5044 -1.1692 12 8 5.4263 6.6832 -0.8333 13 6 6.7002 6.6687 -1.5300 14 6 7.2666 8.0646 -1.5704 15 8 6.6566 8.9815 -1.0624 16 7 8.4512 8.2941 -2.1710 17 6 9.0020 9.6510 -2.2097 18 6 10.3241 9.6359 -2.9329 19 1 10.7150 8.7083 -3.3242 20 6 11.0350 10.8062 -3.0942 21 7 10.5592 11.9357 -2.6173 22 14 12.6741 10.7874 -3.9900 23 1 12.4748 10.2947 -5.3766 24 1 13.2324 12.1629 -4.0294 25 1 13.6178 9.8899 -3.2766 26 6 2.7240 3.3755 1.1972 27 6 2.2633 2.0722 1.1971 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0927 1.5598 -2.1325 34 1 2.9050 3.8844 -2.1324 35 1 2.3295 6.0029 -1.7488 36 1 1.4907 6.3002 -0.2072 37 1 2.8150 7.3729 -0.7214 38 1 7.3931 6.0100 -1.0066 39 1 6.5536 6.3069 -2.5478 40 1 8.9389 7.5608 -2.5776 41 1 8.3092 10.3096 -2.7336 42 1 9.1483 10.0130 -1.1920 43 1 11.0592 12.7591 -2.7310 44 1 2.9044 3.8844 2.1325 45 1 2.0834 1.5630 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727916525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:12 Heat of formation + Delta-G solvation = -118.627094 kcal Electronic energy + Delta-G solvation = -25351.528243 eV Core-core repulsion = 21526.319893 eV Total energy + Delta-G solvation = -3825.208350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92795 -39.63974 -38.67675 -36.49203 -35.41127 -34.25729 -33.01108 -32.41481 -31.16900 -29.37608 -28.72539 -26.74488 -25.24665 -23.73732 -23.02442 -22.55189 -21.38866 -20.20175 -19.93568 -17.73770 -17.58002 -16.75969 -16.61266 -16.13043 -15.77423 -15.44955 -15.28640 -14.95836 -14.69459 -14.24193 -14.16267 -14.05259 -13.79024 -13.43867 -13.25050 -13.05673 -12.74613 -12.73642 -12.48245 -12.16605 -11.99353 -11.95357 -11.76366 -11.71029 -11.47300 -11.08881 -11.05467 -11.04172 -10.91219 -10.68623 -10.44271 -10.35377 -9.46637 -9.19124 -9.10510 -8.79866 -8.78754 -7.99959 -6.20326 -4.27959 1.01906 1.21376 2.11366 2.44436 3.16727 3.23706 3.28635 3.30047 3.52353 3.97922 4.21067 4.32280 4.45864 4.49281 4.64833 4.75707 4.81429 4.88383 4.97604 5.00029 5.13945 5.15647 5.18113 5.23104 5.23906 5.28968 5.33443 5.48734 5.52555 5.55541 5.61039 5.73312 5.83991 5.84776 5.91955 6.17900 6.33103 6.36076 6.37822 6.76695 7.21326 7.29589 7.44657 7.58005 7.68749 7.91043 8.48802 8.69913 8.95157 9.38432 10.89707 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035650 B = 0.001864 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.228747 B =15018.850797 C =15453.642023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.080 4.080 4 C -0.119 4.119 5 C -0.081 4.081 6 C -0.080 4.080 7 C -0.040 4.040 8 H 0.118 0.882 9 C -0.143 4.143 10 C 0.463 3.537 11 O -0.502 6.502 12 O -0.326 6.326 13 C 0.048 3.952 14 C 0.500 3.500 15 O -0.534 6.534 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.547 4.547 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.104 4.104 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.393 0.607 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.267 0.733 44 H 0.124 0.876 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.665 -21.871 5.622 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.080 4.080 4 C -0.137 4.137 5 C -0.099 4.099 6 C -0.081 4.081 7 C -0.059 4.059 8 H 0.135 0.865 9 C -0.200 4.200 10 C 0.305 3.695 11 O -0.389 6.389 12 O -0.241 6.241 13 C -0.029 4.029 14 C 0.283 3.717 15 O -0.412 6.412 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.585 4.585 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.122 4.122 27 C -0.139 4.139 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.226 0.774 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.142 0.858 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.872 -21.247 5.850 29.674 hybrid contribution 1.428 -0.362 -0.758 1.657 sum -18.444 -21.609 5.092 28.863 Atomic orbital electron populations 1.21745 0.94688 1.01668 1.02253 1.20552 0.96180 0.92714 1.02883 1.19912 0.98699 0.96157 0.93244 1.20973 1.00402 0.94741 0.97565 1.20910 0.96855 0.94621 0.97494 1.19298 1.00855 0.93973 0.93934 1.19928 0.89625 0.94552 1.01770 0.86453 1.21823 0.98071 0.99757 1.00383 1.23641 0.86958 0.81239 0.77639 1.90682 1.66919 1.35905 1.45414 1.86560 1.33644 1.34102 1.69818 1.22864 0.83671 0.97885 0.98504 1.19893 0.82572 0.88950 0.80332 1.90707 1.59624 1.44974 1.45854 1.46370 1.19585 1.13892 1.55835 1.19173 0.93306 0.76527 0.97876 1.21175 1.04417 0.94846 1.38049 0.91819 1.24949 0.98400 0.95122 0.95469 1.69965 1.38762 0.98945 1.44498 0.86443 0.82959 0.77292 0.80035 1.20045 1.21027 1.20040 1.20990 0.99240 0.94807 0.97145 1.20936 1.00703 0.94713 0.97533 0.92527 0.92544 0.92439 0.91057 0.91029 0.86120 0.86250 0.91895 0.90777 0.90125 0.88573 0.88583 0.77441 0.95246 0.95246 0.92312 0.85846 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.09 -0.55 6.07 -27.89 -0.17 -0.72 16 3 C -0.08 -0.69 5.13 -104.63 -0.54 -1.22 16 4 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 5 C -0.08 -0.84 7.93 -39.59 -0.31 -1.16 16 6 C -0.08 -0.83 4.40 -104.62 -0.46 -1.29 16 7 C -0.04 -0.41 3.01 -92.92 -0.28 -0.69 16 8 H 0.12 1.01 7.88 -51.93 -0.41 0.60 16 9 C -0.14 -1.27 8.94 37.16 0.33 -0.94 16 10 C 0.46 6.29 7.12 36.01 0.26 6.54 16 11 O -0.50 -7.70 14.86 -18.75 -0.28 -7.98 16 12 O -0.33 -5.10 9.66 -45.91 -0.44 -5.54 16 13 C 0.05 0.74 5.94 36.00 0.21 0.95 16 14 C 0.50 9.99 7.91 -10.98 -0.09 9.91 16 15 O -0.53 -12.98 16.50 -14.11 -0.23 -13.21 16 16 N -0.71 -14.60 5.55 -61.47 -0.34 -14.95 16 17 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 18 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 19 H 0.06 1.58 7.60 -52.48 -0.40 1.19 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.77 13.29 55.43 0.74 -25.03 16 22 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.10 -0.94 9.67 -39.58 -0.38 -1.33 16 27 C -0.12 -1.03 9.70 -39.59 -0.38 -1.41 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.12 1.24 7.52 -52.49 -0.39 0.84 16 35 H 0.06 0.55 7.39 -51.93 -0.38 0.17 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 38 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 39 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 40 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 44 H 0.12 0.88 7.95 -52.49 -0.42 0.46 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -33.57 386.77 -8.99 -42.56 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.97 Total: 2.72 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.27 Total: -0.02 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.40 Total: -39.98 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.95 Total: -26.74 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.57 -8.99 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727916525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.071 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds