Wall clock time and date at job start Tue Mar 31 2020 12:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38234 * 119.99846 * 0.50808 * 5 4 3 7 7 C 1.50704 * 120.00467 * 179.72287 * 6 5 4 8 8 H 1.08994 * 109.47182 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46631 * 60.02103 * 7 6 5 10 10 C 1.50701 * 109.46767 * 300.02404 * 7 6 5 11 11 O 1.20825 * 120.00290 * 359.97438 * 10 7 6 12 12 O 1.34234 * 119.99577 * 179.97438 * 10 7 6 13 13 C 1.45198 * 116.99652 * 180.02562 * 12 10 7 14 14 C 1.50697 * 109.46920 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00307 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99888 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99649 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46734 * 180.02562 * 17 16 14 19 19 H 1.08006 * 120.00209 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00136 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99727 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47283 * 59.99459 * 22 20 18 24 24 H 1.48497 * 109.47093 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46820 * 299.99359 * 22 20 18 26 26 C 1.38241 * 119.99835 * 359.74567 * 6 5 4 27 27 C 1.38230 * 119.99983 * 0.02562 * 26 6 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 33 33 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00386 * 180.23261 * 5 4 3 35 35 H 1.09004 * 109.46829 * 300.00257 * 9 7 6 36 36 H 1.08993 * 109.47018 * 60.00417 * 9 7 6 37 37 H 1.09003 * 109.46922 * 180.02562 * 9 7 6 38 38 H 1.08995 * 109.47189 * 299.99692 * 13 12 10 39 39 H 1.09000 * 109.47320 * 59.99839 * 13 12 10 40 40 H 0.96995 * 119.99819 * 0.02562 * 16 14 13 41 41 H 1.09004 * 109.47083 * 299.99661 * 17 16 14 42 42 H 1.09000 * 109.47370 * 60.00023 * 17 16 14 43 43 H 0.97001 * 120.00159 * 180.02562 * 21 20 18 44 44 H 1.07999 * 119.99721 * 179.97438 * 26 6 5 45 45 H 1.08007 * 119.99843 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9548 4.0270 0.0000 7 6 3.4581 5.4476 0.0001 8 1 3.5795 5.7899 1.0278 9 6 2.4508 6.3455 -0.7211 10 6 4.7856 5.5101 -0.7103 11 8 5.2733 4.5044 -1.1692 12 8 5.4263 6.6832 -0.8333 13 6 6.7002 6.6687 -1.5300 14 6 7.2666 8.0646 -1.5704 15 8 6.6566 8.9815 -1.0624 16 7 8.4512 8.2941 -2.1710 17 6 9.0020 9.6510 -2.2097 18 6 10.3241 9.6359 -2.9329 19 1 10.7150 8.7083 -3.3242 20 6 11.0350 10.8062 -3.0942 21 7 10.5592 11.9357 -2.6173 22 14 12.6741 10.7874 -3.9900 23 1 12.4748 10.2947 -5.3766 24 1 13.2324 12.1629 -4.0294 25 1 13.6178 9.8899 -3.2766 26 6 2.7240 3.3755 1.1972 27 6 2.2633 2.0722 1.1971 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0927 1.5598 -2.1325 34 1 2.9050 3.8844 -2.1324 35 1 2.3295 6.0029 -1.7488 36 1 1.4907 6.3002 -0.2072 37 1 2.8150 7.3729 -0.7214 38 1 7.3931 6.0100 -1.0066 39 1 6.5536 6.3069 -2.5478 40 1 8.9389 7.5608 -2.5776 41 1 8.3092 10.3096 -2.7336 42 1 9.1483 10.0130 -1.1920 43 1 11.0592 12.7591 -2.7310 44 1 2.9044 3.8844 2.1325 45 1 2.0834 1.5630 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727916525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:11 Heat of formation + Delta-G solvation = -137.566253 kcal Electronic energy + Delta-G solvation = -25352.349507 eV Core-core repulsion = 21526.319893 eV Total energy + Delta-G solvation = -3826.029614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98834 -40.66138 -40.08919 -37.64592 -36.19651 -36.16092 -34.42491 -33.64161 -31.83798 -30.85135 -29.49029 -28.50969 -26.05428 -24.83229 -24.14340 -23.69640 -22.19508 -21.65709 -21.03582 -19.24858 -18.78009 -17.99417 -17.86834 -17.19407 -17.11807 -16.84289 -16.41328 -16.14092 -16.06892 -15.67528 -14.86458 -14.72053 -14.68896 -14.52126 -14.32298 -14.15984 -14.01420 -13.88810 -13.68685 -13.34854 -13.32335 -12.99166 -12.94879 -12.68957 -12.58882 -12.32385 -12.24657 -12.06378 -11.91877 -11.70090 -11.64397 -11.53565 -11.45300 -10.91843 -10.81207 -9.94197 -9.79179 -9.47853 -8.29931 -6.46802 0.30982 0.52896 1.05547 1.29837 1.44531 1.47475 1.53821 1.56060 2.33329 2.54463 2.87264 3.05150 3.43054 3.61680 3.73543 3.88777 3.95150 4.02047 4.03746 4.06504 4.13117 4.20636 4.39004 4.52437 4.57650 4.66140 4.72384 4.80432 4.85842 5.05334 5.06377 5.09945 5.11665 5.17077 5.21086 5.22844 5.28583 5.40111 5.40704 5.51028 5.61989 5.64745 5.74027 5.81294 6.10893 6.56201 6.61958 6.77231 7.19455 7.34365 8.81845 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035650 B = 0.001864 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.228747 B =15018.850797 C =15453.642023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.131 4.131 5 C -0.097 4.097 6 C -0.095 4.095 7 C -0.035 4.035 8 H 0.135 0.865 9 C -0.139 4.139 10 C 0.465 3.535 11 O -0.520 6.520 12 O -0.344 6.344 13 C 0.060 3.940 14 C 0.500 3.500 15 O -0.582 6.582 16 N -0.699 5.699 17 C 0.266 3.734 18 C -0.560 4.560 19 H 0.085 0.915 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.985 3.015 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.263 1.263 26 C -0.110 4.110 27 C -0.126 4.126 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.412 0.588 41 H -0.007 1.007 42 H -0.007 1.007 43 H 0.269 0.731 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.480 -24.363 5.576 31.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.149 4.149 5 C -0.115 4.115 6 C -0.095 4.095 7 C -0.054 4.054 8 H 0.153 0.847 9 C -0.196 4.196 10 C 0.309 3.691 11 O -0.408 6.408 12 O -0.260 6.260 13 C -0.017 4.017 14 C 0.286 3.714 15 O -0.463 6.463 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.597 4.597 19 H 0.103 0.897 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.808 3.192 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.187 1.187 26 C -0.127 4.127 27 C -0.144 4.144 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.248 0.752 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.078 0.922 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.694 -23.798 5.792 31.429 hybrid contribution 1.279 0.364 -0.702 1.504 sum -18.415 -23.434 5.090 30.236 Atomic orbital electron populations 1.21724 0.94017 1.02394 1.01960 1.20598 0.96678 0.91417 1.03549 1.20220 0.97975 0.97172 0.93015 1.21180 1.00535 0.94570 0.98569 1.20991 0.97788 0.95313 0.97457 1.19361 1.01740 0.93966 0.94397 1.20053 0.87869 0.95199 1.02309 0.84681 1.21807 0.98625 0.98665 1.00513 1.24295 0.87480 0.80198 0.77161 1.90668 1.67548 1.36267 1.46353 1.86568 1.33731 1.35558 1.70107 1.22719 0.84347 0.94162 1.00503 1.20672 0.81624 0.90581 0.78542 1.90684 1.60773 1.47159 1.47641 1.46052 1.20221 1.12488 1.56284 1.18632 0.93072 0.78659 0.95225 1.21586 1.04408 0.95890 1.37849 0.89653 1.26043 1.02679 0.94552 0.96153 1.70126 1.40712 0.99848 1.46048 0.85200 0.77616 0.77366 0.78994 1.18725 1.21095 1.18723 1.21267 0.98823 0.95188 0.97469 1.21252 1.00103 0.94645 0.98426 0.93057 0.92606 0.91217 0.90098 0.90685 0.85119 0.87007 0.92105 0.88767 0.91264 0.86081 0.86048 0.75183 0.98910 0.98915 0.92189 0.84014 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.89 71.98 0.71 -0.60 16 2 C -0.09 -0.92 6.07 29.85 0.18 -0.74 16 3 C -0.08 -1.30 5.13 -19.87 -0.10 -1.41 16 4 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 5 C -0.10 -1.99 7.93 22.27 0.18 -1.81 16 6 C -0.09 -1.84 4.40 -19.86 -0.09 -1.92 16 7 C -0.04 -0.69 3.01 -12.28 -0.04 -0.73 16 8 H 0.14 2.11 7.88 -2.39 -0.02 2.09 16 9 C -0.14 -2.38 8.94 71.98 0.64 -1.73 16 10 C 0.47 12.21 7.12 71.24 0.51 12.72 16 11 O -0.52 -15.40 14.86 21.97 0.33 -15.08 16 12 O -0.34 -10.54 9.66 -45.10 -0.44 -10.97 16 13 C 0.06 1.75 5.94 71.24 0.42 2.17 16 14 C 0.50 20.15 7.91 87.66 0.69 20.84 16 15 O -0.58 -29.26 16.50 15.75 0.26 -29.00 16 16 N -0.70 -29.02 5.55 -466.77 -2.59 -31.61 16 17 C 0.27 14.42 5.43 85.63 0.46 14.88 16 18 C -0.56 -29.99 9.28 25.60 0.24 -29.76 16 19 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 20 C 0.01 0.31 5.46 84.65 0.46 0.77 16 21 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 22 Si 0.99 41.85 29.54 68.60 2.03 43.87 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 26 C -0.11 -1.80 9.67 22.27 0.22 -1.58 16 27 C -0.13 -1.89 9.70 22.27 0.22 -1.68 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 32 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.11 2.34 7.52 -2.91 -0.02 2.32 16 35 H 0.06 1.05 7.39 -2.38 -0.02 1.03 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 38 H 0.12 3.00 8.13 -2.39 -0.02 2.98 16 39 H 0.12 2.99 8.13 -2.39 -0.02 2.97 16 40 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 41 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.14 1.69 7.95 -2.91 -0.02 1.67 16 45 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -74.39 386.77 5.01 -69.38 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.21 Total: 21.21 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.92 Total: 7.32 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.30 Total: -86.74 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: 0.15 Total: -55.04 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -74.39 5.01 -69.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727916525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.184 kcal (2) G-P(sol) polarization free energy of solvation -74.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds