Wall clock time and date at job start Tue Mar 31 2020 12:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99602 * 2 1 4 4 H 1.08995 * 112.85606 * 338.31257 * 3 2 1 5 5 C 1.53785 * 113.61198 * 109.50830 * 3 2 1 6 6 C 1.53790 * 87.08154 * 89.11502 * 5 3 2 7 7 H 1.08993 * 113.61334 * 270.80136 * 6 5 3 8 8 N 1.46494 * 113.61185 * 139.97869 * 6 5 3 9 9 C 1.34779 * 119.99757 * 105.86837 * 8 6 5 10 10 O 1.21591 * 119.99951 * 359.97438 * 9 8 6 11 11 C 1.47534 * 119.99991 * 179.97438 * 9 8 6 12 12 C 1.39663 * 120.19833 * 359.97438 * 11 9 8 13 13 C 1.37824 * 119.91934 * 180.02562 * 12 11 9 14 14 C 1.38568 * 120.32639 * 0.02562 * 13 12 11 15 15 C 1.38027 * 120.39988 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.07259 * 359.71470 * 15 14 13 17 17 O 1.35521 * 120.16378 * 180.28717 * 16 15 14 18 18 C 1.34807 * 116.99833 * 354.38975 * 17 16 15 19 19 H 1.08006 * 120.00462 * 5.06072 * 18 17 16 20 20 C 1.38701 * 120.00229 * 185.05658 * 18 17 16 21 21 N 1.31520 * 120.00346 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99676 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47516 * 90.00055 * 22 20 18 24 24 H 1.48501 * 109.47261 * 210.00030 * 22 20 18 25 25 H 1.48504 * 109.47401 * 329.99981 * 22 20 18 26 26 C 1.53787 * 87.17171 * 25.39073 * 6 5 3 27 27 C 1.52998 * 113.61426 * 89.15991 * 26 6 5 28 28 C 1.53005 * 113.61165 * 220.06521 * 26 6 5 29 29 H 1.08993 * 109.47075 * 59.99841 * 1 2 3 30 30 H 1.08994 * 109.46733 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46694 * 299.99515 * 1 2 3 32 32 H 1.08991 * 113.61685 * 334.56291 * 5 3 2 33 33 H 1.09000 * 113.61047 * 203.66107 * 5 3 2 34 34 H 0.97000 * 120.00420 * 285.85839 * 8 6 5 35 35 H 1.08000 * 120.04116 * 359.97438 * 12 11 9 36 36 H 1.08011 * 119.83772 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.79983 * 179.97438 * 14 13 12 38 38 H 1.08000 * 119.96242 * 179.97438 * 15 14 13 39 39 H 0.96997 * 120.00114 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.47097 * 59.99809 * 27 26 6 41 41 H 1.09000 * 109.46933 * 179.97438 * 27 26 6 42 42 H 1.08998 * 109.47151 * 299.99385 * 27 26 6 43 43 H 1.09001 * 109.47179 * 59.99612 * 28 26 6 44 44 H 1.09000 * 109.47027 * 180.02562 * 28 26 6 45 45 H 1.08998 * 109.46687 * 299.99562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3298 2.0718 -0.3712 5 6 2.6906 1.6768 1.3282 6 6 3.9725 1.0481 0.7567 7 1 4.0663 -0.0177 0.9647 8 7 5.1882 1.7997 1.0778 9 6 6.0458 1.3296 2.0052 10 8 5.8101 0.2820 2.5757 11 6 7.2705 2.0862 2.3283 12 6 7.5456 3.2897 1.6752 13 6 8.6916 3.9915 1.9811 14 6 9.5742 3.5088 2.9340 15 6 9.3161 2.3204 3.5868 16 6 8.1640 1.6027 3.2955 17 8 7.9058 0.4385 3.9395 18 6 8.8621 -0.0281 4.7672 19 1 9.7476 0.5608 4.9558 20 6 8.7090 -1.2646 5.3766 21 7 9.6418 -1.7197 6.1844 22 14 7.1779 -2.2836 5.0499 23 1 7.4116 -3.1671 3.8794 24 1 6.8715 -3.1132 6.2429 25 1 6.0332 -1.3806 4.7678 26 6 3.4092 1.3557 -0.6409 27 6 3.7937 2.7406 -1.1654 28 6 3.6579 0.2424 -1.6605 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2886 1.1427 2.1890 33 1 2.7677 2.7514 1.4937 34 1 5.3761 2.6355 0.6229 35 1 6.8615 3.6695 0.9308 36 1 8.9028 4.9223 1.4755 37 1 10.4700 4.0655 3.1668 38 1 10.0091 1.9506 4.3280 39 1 9.5345 -2.5843 6.6109 40 1 4.8792 2.8168 -1.2282 41 1 3.3616 2.8869 -2.1554 42 1 3.4144 3.5044 -0.4866 43 1 3.1872 -0.6782 -1.3154 44 1 3.2336 0.5294 -2.6226 45 1 4.7306 0.0830 -1.7700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753261656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:28 Heat of formation + Delta-G solvation = -77.739706 kcal Electronic energy + Delta-G solvation = -27377.564291 eV Core-core repulsion = 23554.128951 eV Total energy + Delta-G solvation = -3823.435340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.84193 -41.03751 -39.53358 -38.15115 -37.42408 -34.57996 -34.40601 -32.08870 -31.34091 -30.79613 -28.49638 -27.59136 -27.28345 -25.88162 -24.20137 -23.45377 -22.85112 -21.57296 -20.11711 -19.81572 -19.11820 -18.02561 -17.86886 -16.81931 -16.54941 -16.43252 -16.11738 -16.07662 -15.88317 -15.58039 -15.44383 -15.29025 -14.89014 -14.55720 -14.31679 -14.21870 -14.03712 -13.97451 -13.27962 -13.16750 -13.05344 -13.02114 -12.81380 -12.71204 -12.58522 -12.41340 -12.38971 -12.05263 -11.88152 -11.67645 -11.52906 -11.16404 -10.98912 -10.66477 -10.41202 -10.04649 -9.78002 -9.14647 -8.60034 -6.28030 0.05587 0.64980 1.20889 1.26636 1.55313 2.02482 2.25866 2.27638 2.68069 2.74344 3.02211 3.16150 3.37094 3.52307 3.82554 3.90464 3.98188 4.02940 4.24233 4.24865 4.30560 4.47533 4.47886 4.54288 4.58313 4.59598 4.72224 4.79310 4.80040 4.86205 4.90737 4.96682 5.00476 5.07355 5.09809 5.14609 5.28598 5.39002 5.46254 5.47784 5.60948 5.63093 5.69574 5.83239 6.15872 6.31019 6.67283 6.77981 7.42671 7.58886 8.50652 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.004315 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.181105 B = 6487.170804 C = 8325.742823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.081 3.919 4 H 0.111 0.889 5 C -0.172 4.172 6 C 0.124 3.876 7 H 0.069 0.931 8 N -0.702 5.702 9 C 0.552 3.448 10 O -0.577 6.577 11 C -0.234 4.234 12 C -0.030 4.030 13 C -0.187 4.187 14 C -0.042 4.042 15 C -0.251 4.251 16 C 0.160 3.840 17 O -0.211 6.211 18 C -0.402 4.402 19 H 0.094 0.906 20 C 0.029 3.971 21 N -0.910 5.910 22 Si 0.952 3.048 23 H -0.278 1.278 24 H -0.263 1.263 25 H -0.270 1.270 26 C -0.077 4.077 27 C -0.133 4.133 28 C -0.132 4.132 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.413 0.587 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.115 0.885 39 H 0.286 0.714 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 15.062 -18.821 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C 0.023 3.977 4 H 0.129 0.871 5 C -0.211 4.211 6 C 0.018 3.982 7 H 0.087 0.913 8 N -0.356 5.356 9 C 0.342 3.658 10 O -0.457 6.457 11 C -0.239 4.239 12 C -0.048 4.048 13 C -0.205 4.205 14 C -0.060 4.060 15 C -0.270 4.270 16 C 0.107 3.893 17 O -0.116 6.116 18 C -0.479 4.479 19 H 0.111 0.889 20 C -0.172 4.172 21 N -0.550 5.550 22 Si 0.777 3.223 23 H -0.204 1.204 24 H -0.188 1.188 25 H -0.195 1.195 26 C -0.078 4.078 27 C -0.190 4.190 28 C -0.190 4.190 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.253 0.747 35 H 0.183 0.817 36 H 0.187 0.813 37 H 0.169 0.831 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.677 13.809 -18.273 27.755 hybrid contribution -0.046 -0.820 0.729 1.098 sum -15.723 12.989 -17.544 26.902 Atomic orbital electron populations 1.22981 0.79403 1.03600 1.01060 1.87885 1.21470 1.27375 1.94499 1.23088 0.94230 0.85523 0.94893 0.87114 1.24008 0.96248 1.02430 0.98365 1.22532 0.82937 0.95822 0.96883 0.91254 1.45663 1.22338 1.26666 1.40940 1.18514 0.83441 0.84474 0.79376 1.90839 1.76571 1.25463 1.52847 1.19331 0.98143 1.01553 1.04843 1.21341 0.97289 0.90114 0.96058 1.21250 0.95158 1.02811 1.01315 1.21457 0.99199 0.92472 0.92914 1.21336 0.99228 0.99621 1.06835 1.19800 0.93535 0.85935 0.90044 1.83779 1.41475 1.34076 1.52235 1.20914 1.00249 1.03891 1.22802 0.88900 1.24979 1.00260 0.96856 0.95059 1.69673 1.34462 1.21070 1.29809 0.85465 0.80624 0.78629 0.77592 1.20415 1.18796 1.19467 1.22547 0.93728 0.98636 0.92912 1.21674 1.02575 0.92132 1.02656 1.21588 1.00939 0.97794 0.98644 0.91934 0.89207 0.93597 0.92972 0.86694 0.74685 0.81667 0.81316 0.83054 0.86762 0.90435 0.91076 0.89551 0.90302 0.93260 0.90368 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.86 113.37 1.23 1.60 16 2 O -0.39 -8.77 9.17 -148.98 -1.37 -10.13 16 3 C 0.08 1.47 3.78 31.18 0.12 1.59 16 4 H 0.11 1.29 7.86 -2.39 -0.02 1.27 16 5 C -0.17 -3.94 7.36 31.12 0.23 -3.71 16 6 C 0.12 3.47 3.60 45.52 0.16 3.64 16 7 H 0.07 2.64 7.46 -2.39 -0.02 2.62 16 8 N -0.70 -20.17 5.19 -443.19 -2.30 -22.47 16 9 C 0.55 23.15 7.76 86.69 0.67 23.83 16 10 O -0.58 -31.46 14.79 16.89 0.25 -31.21 16 11 C -0.23 -9.41 5.89 -19.99 -0.12 -9.53 16 12 C -0.03 -0.80 9.53 22.52 0.21 -0.58 16 13 C -0.19 -4.55 10.02 22.25 0.22 -4.32 16 14 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 15 C -0.25 -10.83 9.16 22.36 0.20 -10.63 16 16 C 0.16 7.93 6.66 22.91 0.15 8.08 16 17 O -0.21 -12.70 6.67 0.90 0.01 -12.69 16 18 C -0.40 -25.18 9.95 67.93 0.68 -24.51 16 19 H 0.09 5.84 5.44 -2.91 -0.02 5.82 16 20 C 0.03 1.79 5.49 84.85 0.47 2.26 16 21 N -0.91 -56.72 13.96 21.62 0.30 -56.42 16 22 Si 0.95 52.73 28.62 68.60 1.96 54.70 16 23 H -0.28 -15.29 7.11 99.48 0.71 -14.59 16 24 H -0.26 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.27 -16.21 7.11 99.48 0.71 -15.51 16 26 C -0.08 -1.43 1.35 -51.59 -0.07 -1.50 16 27 C -0.13 -1.42 8.07 71.98 0.58 -0.84 16 28 C -0.13 -2.65 9.05 71.98 0.65 -2.00 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 2.05 7.66 -2.39 -0.02 2.03 16 34 H 0.41 8.10 4.65 -92.71 -0.43 7.67 16 35 H 0.17 2.67 6.40 -2.91 -0.02 2.65 16 36 H 0.17 2.45 8.06 -2.90 -0.02 2.43 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.11 5.40 5.64 -2.91 -0.02 5.38 16 39 H 0.29 16.41 8.31 -92.71 -0.77 15.64 16 40 H 0.07 0.73 7.07 -2.39 -0.02 0.71 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.08 0.62 7.35 -2.39 -0.02 0.60 16 43 H 0.05 1.19 6.96 -2.39 -0.02 1.17 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -85.55 366.19 5.05 -80.50 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.58 Total: 15.42 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 5.62 Total: -17.69 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.00 Total: -78.89 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -1.11 Total: -54.04 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 1.96 Total: 54.70 kcal Total: -85.55 5.05 -80.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753261656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.758 kcal (2) G-P(sol) polarization free energy of solvation -85.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds