Wall clock time and date at job start Tue Mar 31 2020 13:02:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52998 * 109.47045 * 2 1
4 4 C 1.50704 * 113.00373 * 293.96164 * 3 2 1
5 5 O 1.21291 * 119.99289 * 341.60770 * 4 3 2
6 6 N 1.34772 * 120.00367 * 161.60360 * 4 3 2
7 7 C 1.39912 * 120.00074 * 184.06236 * 6 4 3
8 8 C 1.38927 * 120.04089 * 323.85964 * 7 6 4
9 9 C 1.38125 * 120.04147 * 179.97438 * 8 7 6
10 10 C 1.38220 * 120.12309 * 359.97438 * 9 8 7
11 11 C 1.38759 * 120.08543 * 359.97438 * 10 9 8
12 12 O 1.35902 * 120.02286 * 179.97438 * 11 10 9
13 13 C 1.42894 * 116.99644 * 359.97438 * 12 11 10
14 14 C 1.53004 * 109.47128 * 179.97438 * 13 12 11
15 15 C 1.50701 * 109.47385 * 179.97438 * 14 13 12
16 16 H 1.07996 * 119.99578 * 0.02562 * 15 14 13
17 17 C 1.37873 * 120.00085 * 179.97438 * 15 14 13
18 18 N 1.31519 * 120.00086 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 120.00011 * 180.02562 * 17 15 14
20 20 H 1.48500 * 109.47415 * 90.00218 * 19 17 15
21 21 H 1.48506 * 109.46994 * 210.00203 * 19 17 15
22 22 H 1.48499 * 109.47152 * 329.99985 * 19 17 15
23 23 C 1.38631 * 119.96169 * 0.26971 * 11 10 9
24 24 C 1.54041 * 113.92495 * 65.89333 * 3 2 1
25 25 O 1.44177 * 85.51703 * 136.81932 * 24 3 2
26 26 C 1.44177 * 93.34116 * 335.80605 * 25 24 3
27 27 H 1.09005 * 109.47118 * 305.74846 * 1 2 3
28 28 H 1.08995 * 109.47448 * 65.75185 * 1 2 3
29 29 H 1.08997 * 109.47136 * 185.75347 * 1 2 3
30 30 H 1.09003 * 109.46853 * 240.00626 * 2 1 3
31 31 H 1.08995 * 109.47262 * 120.00477 * 2 1 3
32 32 H 0.97004 * 119.99739 * 4.05893 * 6 4 3
33 33 H 1.07997 * 119.98351 * 359.96363 * 8 7 6
34 34 H 1.07996 * 119.94114 * 180.02562 * 9 8 7
35 35 H 1.08003 * 119.95682 * 180.02562 * 10 9 8
36 36 H 1.08996 * 109.47135 * 299.99859 * 13 12 11
37 37 H 1.08994 * 109.47587 * 60.00001 * 13 12 11
38 38 H 1.08996 * 109.47080 * 299.99994 * 14 13 12
39 39 H 1.09004 * 109.46925 * 60.00115 * 14 13 12
40 40 H 0.96998 * 119.99841 * 179.97438 * 18 17 15
41 41 H 1.07991 * 120.06792 * 179.74917 * 23 11 10
42 42 H 1.08999 * 113.86504 * 250.96445 * 24 3 2
43 43 H 1.08998 * 113.86550 * 22.66666 * 24 3 2
44 44 H 1.09006 * 113.86752 * 270.05062 * 26 25 24
45 45 H 1.08999 * 113.86656 * 138.34314 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.7051 2.1855 -1.2677
5 8 1.4010 1.5712 -2.2683
6 7 1.7436 3.5325 -1.2895
7 6 1.3510 4.2250 -2.4400
8 6 1.6331 3.7031 -3.6962
9 6 1.2451 4.3865 -4.8321
10 6 0.5750 5.5904 -4.7223
11 6 0.2896 6.1160 -3.4703
12 8 -0.3688 7.3001 -3.3638
13 6 -0.7365 7.9496 -4.5823
14 6 -1.4635 9.2577 -4.2638
15 6 -1.8509 9.9430 -5.5489
16 1 -1.6036 9.4906 -6.4978
17 6 -2.5218 11.1470 -5.5130
18 7 -2.8233 11.6976 -4.3573
19 14 -3.0025 11.9961 -7.1059
20 1 -4.3528 11.5395 -7.5223
21 1 -3.0195 13.4663 -6.8975
22 1 -2.0173 11.6576 -8.1642
23 6 0.6819 5.4356 -2.3279
24 6 1.7060 2.2231 1.2853
25 8 3.0599 2.7122 1.2050
26 6 3.5119 1.5819 0.4323
27 1 -0.3633 0.6004 0.8341
28 1 -0.3634 0.4220 -0.9369
29 1 -0.3633 -1.0225 0.1030
30 1 1.8933 -0.5138 -0.8901
31 1 1.8934 -0.5139 0.8899
32 1 2.0434 4.0219 -0.5074
33 1 2.1563 2.7624 -3.7847
34 1 1.4648 3.9790 -5.8078
35 1 0.2725 6.1223 -5.6123
36 1 0.1596 8.1641 -5.1646
37 1 -1.3957 7.2986 -5.1566
38 1 -2.3597 9.0428 -3.6818
39 1 -0.8047 9.9090 -3.6894
40 1 -3.2950 12.5448 -4.3322
41 1 0.4643 5.8451 -1.3526
42 1 0.9493 2.9956 1.1480
43 1 1.5171 1.5879 2.1506
44 1 3.8744 0.7507 1.0373
45 1 4.1874 1.8457 -0.3814
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000755201884.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:02:04
Heat of formation + Delta-G solvation = -68.482941 kcal
Electronic energy + Delta-G solvation = -26110.126818 eV
Core-core repulsion = 22287.092882 eV
Total energy + Delta-G solvation = -3823.033936 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.00527 -40.07202 -39.01045 -37.15551 -34.78212 -34.11180 -33.36825 -30.92045
-30.03938 -29.22702 -28.56267 -27.18846 -25.15393 -23.95091 -23.48543 -22.61707
-21.82418 -20.48547 -19.71694 -18.26606 -17.68684 -16.77975 -16.53732 -16.28961
-15.83975 -15.67245 -15.56010 -15.38583 -15.27487 -14.85357 -14.62364 -14.42735
-13.70180 -13.57735 -13.32992 -13.11418 -12.93640 -12.74271 -12.46509 -12.32725
-11.92770 -11.72344 -11.52328 -11.38438 -11.20330 -10.94074 -10.90771 -10.79947
-10.65568 -10.52897 -10.27501 -9.90445 -9.78558 -9.66029 -9.30837 -8.46741
-8.35864 -7.80219 -6.11047 -4.15679 1.26934 1.66217 2.17383 2.65769
2.97828 3.27226 3.33216 3.36065 3.63463 3.82943 3.94077 4.03616
4.38720 4.41229 4.47622 4.69212 4.85115 4.87887 4.98891 5.04545
5.10251 5.25458 5.29601 5.32739 5.34263 5.36597 5.45122 5.47423
5.56353 5.64263 5.73719 5.79938 5.91972 6.03027 6.03559 6.26873
6.34685 6.53034 6.60141 6.71886 6.96308 7.16922 7.49190 7.63006
7.79252 7.81703 8.03801 8.22953 8.89901 9.48710 11.00537
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.027061 B = 0.002148 C = 0.002093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1034.440614 B =13031.880797 C =13372.186941
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.101 4.101
3 C -0.155 4.155
4 C 0.539 3.461
5 O -0.508 6.508
6 N -0.664 5.664
7 C 0.173 3.827
8 C -0.167 4.167
9 C -0.064 4.064
10 C -0.221 4.221
11 C 0.163 3.837
12 O -0.314 6.314
13 C 0.065 3.935
14 C 0.025 3.975
15 C -0.526 4.526
16 H 0.058 0.942
17 C 0.060 3.940
18 N -0.890 5.890
19 Si 0.899 3.101
20 H -0.279 1.279
21 H -0.285 1.285
22 H -0.273 1.273
23 C -0.186 4.186
24 C 0.047 3.953
25 O -0.376 6.376
26 C 0.058 3.942
27 H 0.053 0.947
28 H 0.063 0.937
29 H 0.060 0.940
30 H 0.080 0.920
31 H 0.074 0.926
32 H 0.415 0.585
33 H 0.132 0.868
34 H 0.125 0.875
35 H 0.132 0.868
36 H 0.052 0.948
37 H 0.052 0.948
38 H 0.028 0.972
39 H 0.028 0.972
40 H 0.263 0.737
41 H 0.131 0.869
42 H 0.098 0.902
43 H 0.097 0.903
44 H 0.097 0.903
45 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.952 -23.877 11.114 28.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.139 4.139
3 C -0.158 4.158
4 C 0.325 3.675
5 O -0.382 6.382
6 N -0.310 5.310
7 C 0.080 3.920
8 C -0.188 4.188
9 C -0.082 4.082
10 C -0.241 4.241
11 C 0.115 3.885
12 O -0.227 6.227
13 C -0.009 4.009
14 C -0.012 4.012
15 C -0.564 4.564
16 H 0.077 0.923
17 C -0.142 4.142
18 N -0.528 5.528
19 Si 0.726 3.274
20 H -0.205 1.205
21 H -0.210 1.210
22 H -0.198 1.198
23 C -0.206 4.206
24 C -0.030 4.030
25 O -0.295 6.295
26 C -0.020 4.020
27 H 0.072 0.928
28 H 0.082 0.918
29 H 0.079 0.921
30 H 0.098 0.902
31 H 0.093 0.907
32 H 0.253 0.747
33 H 0.150 0.850
34 H 0.143 0.857
35 H 0.150 0.850
36 H 0.070 0.930
37 H 0.070 0.930
38 H 0.046 0.954
39 H 0.046 0.954
40 H 0.073 0.927
41 H 0.149 0.851
42 H 0.117 0.883
43 H 0.115 0.885
44 H 0.115 0.885
45 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 11.708 -23.833 10.786 28.660
hybrid contribution -0.290 0.641 -0.721 1.007
sum 11.418 -23.193 10.065 27.741
Atomic orbital electron populations
1.21776 0.94793 1.02170 1.02598 1.21363 0.97096 0.92192 1.03212
1.23985 0.98809 0.98469 0.94554 1.19778 0.76929 0.81754 0.89057
1.90727 1.45562 1.67349 1.34579 1.43489 1.64966 1.06484 1.16099
1.17293 0.96637 0.91978 0.86133 1.20968 1.05181 1.02025 0.90585
1.20799 0.95760 0.93529 0.98158 1.21411 1.06414 0.99086 0.97140
1.18805 0.90673 0.86165 0.92856 1.86164 1.69485 1.30759 1.36332
1.23355 0.98478 0.95719 0.83341 1.19130 0.95641 0.88416 0.98011
1.20968 1.37777 1.05691 0.92009 0.92336 1.24992 0.95601 0.97097
0.96526 1.69977 1.40031 1.18402 1.24366 0.86482 0.78968 0.78666
0.83237 1.20491 1.21048 1.19750 1.20010 1.05644 0.96818 0.98177
1.24146 0.86221 0.97182 0.95443 1.89735 1.23595 1.39925 1.76234
1.24027 0.93655 0.89695 0.94579 0.92791 0.91760 0.92121 0.90162
0.90695 0.74691 0.84977 0.85713 0.84994 0.92988 0.93020 0.95398
0.95376 0.92701 0.85097 0.88338 0.88489 0.88465 0.88504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.11 9.61 37.16 0.36 -0.75 16
2 C -0.10 -0.63 5.03 -26.73 -0.13 -0.77 16
3 C -0.15 -1.10 0.97 -154.57 -0.15 -1.25 16
4 C 0.54 5.80 6.43 -10.99 -0.07 5.72 16
5 O -0.51 -7.02 12.99 5.55 0.07 -6.94 16
6 N -0.66 -7.31 5.06 -9.88 -0.05 -7.36 16
7 C 0.17 2.41 6.27 -83.72 -0.53 1.88 16
8 C -0.17 -2.39 8.68 -39.37 -0.34 -2.73 16
9 C -0.06 -0.90 10.03 -39.63 -0.40 -1.29 16
10 C -0.22 -3.53 9.04 -39.40 -0.36 -3.89 16
11 C 0.16 2.86 6.68 -39.24 -0.26 2.60 16
12 O -0.31 -6.46 10.13 -19.43 -0.20 -6.65 16
13 C 0.07 1.39 4.68 37.16 0.17 1.57 16
14 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16
15 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16
16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16
17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
18 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16
19 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16
20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
23 C -0.19 -2.84 9.91 -39.24 -0.39 -3.23 16
24 C 0.05 0.28 7.04 37.61 0.26 0.55 16
25 O -0.38 -2.89 11.43 -35.23 -0.40 -3.29 16
26 C 0.06 0.34 8.34 37.61 0.31 0.65 16
27 H 0.05 0.33 7.49 -51.93 -0.39 -0.06 16
28 H 0.06 0.63 7.16 -51.93 -0.37 0.25 16
29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
30 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16
31 H 0.07 0.30 8.06 -51.93 -0.42 -0.11 16
32 H 0.42 3.81 6.97 -40.82 -0.28 3.53 16
33 H 0.13 1.86 6.32 -52.49 -0.33 1.52 16
34 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16
35 H 0.13 2.04 6.29 -52.48 -0.33 1.71 16
36 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16
37 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16
38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16
40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
41 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16
42 H 0.10 0.58 7.69 -51.93 -0.40 0.18 16
43 H 0.10 0.39 8.10 -51.93 -0.42 -0.03 16
44 H 0.10 0.36 8.04 -51.93 -0.42 -0.06 16
45 H 0.10 0.57 8.09 -51.93 -0.42 0.15 16
LS Contribution 370.41 15.07 5.58 5.58
Total: -1.00 -32.38 370.41 -8.00 -40.38
By element:
Atomic # 1 Polarization: 8.18 SS G_CDS: -6.64 Total: 1.54 kcal
Atomic # 6 Polarization: -11.72 SS G_CDS: -2.08 Total: -13.79 kcal
Atomic # 7 Polarization: -33.76 SS G_CDS: 0.69 Total: -33.07 kcal
Atomic # 8 Polarization: -16.36 SS G_CDS: -0.53 Total: -16.89 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -32.38 -8.00 -40.38 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000755201884.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.103 kcal
(2) G-P(sol) polarization free energy of solvation -32.378 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds