Wall clock time and date at job start Tue Mar 31 2020 13:12:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47148 * 2 1
4 4 C 1.53000 * 109.47289 * 240.00131 * 2 1 3
5 5 C 1.50702 * 109.47384 * 119.99869 * 2 1 3
6 6 C 1.37963 * 120.07648 * 357.74371 * 5 2 1
7 7 C 1.38338 * 120.14978 * 180.02562 * 6 5 2
8 8 C 1.38391 * 120.30633 * 359.97438 * 7 6 5
9 9 C 1.37926 * 120.14754 * 359.97438 * 8 7 6
10 10 C 1.39611 * 120.07483 * 178.01505 * 5 2 1
11 11 C 1.47727 * 120.15098 * 0.02562 * 10 5 2
12 12 O 1.21464 * 120.00219 * 353.74210 * 11 10 5
13 13 O 1.34719 * 119.99636 * 173.73710 * 11 10 5
14 14 C 1.45196 * 116.99523 * 180.02562 * 13 11 10
15 15 C 1.50701 * 109.46763 * 180.02562 * 14 13 11
16 16 O 1.21276 * 120.00292 * 359.97438 * 15 14 13
17 17 N 1.34776 * 119.99933 * 179.97438 * 15 14 13
18 18 C 1.46498 * 120.00185 * 179.97438 * 17 15 14
19 19 C 1.50705 * 109.47426 * 180.02562 * 18 17 15
20 20 H 1.07997 * 119.99568 * 0.02562 * 19 18 17
21 21 C 1.37872 * 119.99918 * 180.02562 * 19 18 17
22 22 N 1.31519 * 119.99689 * 180.02562 * 21 19 18
23 23 Si 1.86793 * 120.00241 * 0.02562 * 21 19 18
24 24 H 1.48498 * 109.47387 * 90.00241 * 23 21 19
25 25 H 1.48503 * 109.47053 * 210.00083 * 23 21 19
26 26 H 1.48501 * 109.47184 * 329.99746 * 23 21 19
27 27 H 1.08999 * 109.47008 * 299.99418 * 1 2 3
28 28 H 1.08996 * 109.47489 * 59.99860 * 1 2 3
29 29 H 1.08998 * 109.47182 * 180.02562 * 1 2 3
30 30 H 1.08996 * 109.47355 * 154.87022 * 3 2 1
31 31 H 1.08995 * 109.47466 * 274.87406 * 3 2 1
32 32 H 1.09005 * 109.47155 * 34.87282 * 3 2 1
33 33 H 1.09003 * 109.47041 * 333.84598 * 4 2 1
34 34 H 1.09009 * 109.47098 * 93.84270 * 4 2 1
35 35 H 1.08993 * 109.47180 * 213.84312 * 4 2 1
36 36 H 1.08005 * 119.92257 * 0.03294 * 6 5 2
37 37 H 1.08004 * 119.84564 * 179.97438 * 7 6 5
38 38 H 1.08001 * 119.92782 * 180.02562 * 8 7 6
39 39 H 1.08002 * 120.07469 * 180.02562 * 9 8 7
40 40 H 1.09004 * 109.46912 * 299.99376 * 14 13 11
41 41 H 1.08996 * 109.47874 * 59.99513 * 14 13 11
42 42 H 0.97005 * 120.00327 * 359.97438 * 17 15 14
43 43 H 1.08996 * 109.47017 * 300.00161 * 18 17 15
44 44 H 1.09003 * 109.47219 * 60.00210 * 18 17 15
45 45 H 0.96995 * 119.99810 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 2.0324 -0.7104 1.2305
6 6 1.1382 -1.1944 2.1629
7 6 1.5977 -1.8463 3.2933
8 6 2.9557 -2.0181 3.4968
9 6 3.8607 -1.5401 2.5721
10 6 3.4040 -0.8752 1.4322
11 6 4.3676 -0.3537 0.4413
12 8 3.9683 0.1179 -0.6044
13 8 5.6893 -0.4012 0.6976
14 6 6.5776 0.1297 -0.3209
15 6 8.0066 -0.0081 0.1376
16 8 8.2521 -0.5044 1.2166
17 7 9.0118 0.4202 -0.6515
18 6 10.4008 0.2868 -0.2056
19 6 11.3229 0.8377 -1.2627
20 1 10.9150 1.2467 -2.1752
21 6 12.6873 0.8195 -1.0648
22 7 13.4919 1.3008 -1.9871
23 14 13.3929 0.1114 0.5131
24 1 13.6499 -1.3400 0.3329
25 1 14.6659 0.8027 0.8400
26 1 12.4239 0.3088 1.6210
27 1 -0.3633 0.5137 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0276 0.0005
30 1 3.0382 1.4750 0.4364
31 1 2.0788 1.8142 -1.0239
32 1 1.3662 2.0661 0.5876
33 1 1.2914 -1.4385 -1.5857
34 1 2.2261 0.0071 -2.0387
35 1 2.9658 -1.2458 -1.0134
36 1 0.0770 -1.0642 2.0100
37 1 0.8933 -2.2229 4.0203
38 1 3.3078 -2.5283 4.3812
39 1 4.9202 -1.6751 2.7319
40 1 6.4391 -0.4251 -1.2489
41 1 6.3496 1.1821 -0.4893
42 1 8.8155 0.8168 -1.5147
43 1 10.5395 0.8419 0.7221
44 1 10.6288 -0.7657 -0.0368
45 1 14.4518 1.2877 -1.8481
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000771429934.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:12:01
Heat of formation + Delta-G solvation = -74.001552 kcal
Electronic energy + Delta-G solvation = -26619.572099 eV
Core-core repulsion = 22796.298857 eV
Total energy + Delta-G solvation = -3823.273241 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.42542 -39.58167 -38.66220 -37.15101 -35.74732 -34.38750 -32.45202 -31.88784
-30.41131 -29.45424 -27.58142 -27.38242 -27.16271 -24.39641 -23.12125 -22.18341
-21.09828 -20.13962 -19.35379 -18.36972 -17.53594 -17.05460 -16.83331 -16.15713
-15.68351 -15.40536 -15.10433 -15.03127 -14.73946 -14.47247 -14.40040 -14.10546
-13.69348 -13.64204 -13.15492 -12.67943 -12.64883 -12.45769 -12.39787 -12.28710
-12.19511 -11.92269 -11.86283 -11.49115 -11.08235 -11.04938 -10.96126 -10.81120
-10.77354 -10.43127 -10.01473 -9.90514 -9.55679 -9.35829 -9.29808 -9.05803
-8.83145 -8.28540 -6.25458 -4.28575 0.45725 1.06420 2.33717 2.38224
3.01555 3.24311 3.31221 3.38941 3.49082 3.85643 4.25561 4.29741
4.40129 4.61882 4.69750 4.78718 4.85391 4.97659 5.05690 5.09201
5.11455 5.16468 5.20889 5.21458 5.41714 5.49888 5.51086 5.64438
5.68244 5.73151 5.81498 5.89541 5.94858 6.02235 6.10980 6.19011
6.24794 6.39095 6.41531 6.56401 6.71737 6.99352 7.07858 7.30313
7.63473 8.03531 8.39789 8.66554 8.78398 9.33608 10.86333
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.024141 B = 0.002539 C = 0.002338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1159.552541 B =11024.020049 C =11974.943147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.028 4.028
3 C -0.125 4.125
4 C -0.120 4.120
5 C -0.005 4.005
6 C -0.140 4.140
7 C -0.082 4.082
8 C -0.141 4.141
9 C -0.055 4.055
10 C -0.124 4.124
11 C 0.490 3.510
12 O -0.479 6.479
13 O -0.327 6.327
14 C 0.051 3.949
15 C 0.502 3.498
16 O -0.537 6.537
17 N -0.699 5.699
18 C 0.222 3.778
19 C -0.546 4.546
20 H 0.081 0.919
21 C 0.078 3.922
22 N -0.891 5.891
23 Si 0.877 3.123
24 H -0.272 1.272
25 H -0.283 1.283
26 H -0.260 1.260
27 H 0.056 0.944
28 H 0.060 0.940
29 H 0.057 0.943
30 H 0.059 0.941
31 H 0.062 0.938
32 H 0.043 0.957
33 H 0.033 0.967
34 H 0.063 0.937
35 H 0.070 0.930
36 H 0.135 0.865
37 H 0.127 0.873
38 H 0.131 0.869
39 H 0.143 0.857
40 H 0.099 0.901
41 H 0.099 0.901
42 H 0.399 0.601
43 H 0.028 0.972
44 H 0.023 0.977
45 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.106 -4.368 6.654 29.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.028 4.028
3 C -0.182 4.182
4 C -0.177 4.177
5 C -0.006 4.006
6 C -0.157 4.157
7 C -0.100 4.100
8 C -0.159 4.159
9 C -0.073 4.073
10 C -0.125 4.125
11 C 0.336 3.664
12 O -0.368 6.368
13 O -0.242 6.242
14 C -0.026 4.026
15 C 0.285 3.715
16 O -0.414 6.414
17 N -0.350 5.350
18 C 0.101 3.899
19 C -0.584 4.584
20 H 0.099 0.901
21 C -0.126 4.126
22 N -0.528 5.528
23 Si 0.703 3.297
24 H -0.198 1.198
25 H -0.208 1.208
26 H -0.185 1.185
27 H 0.075 0.925
28 H 0.079 0.921
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.081 0.919
32 H 0.062 0.938
33 H 0.051 0.949
34 H 0.082 0.918
35 H 0.089 0.911
36 H 0.153 0.847
37 H 0.145 0.855
38 H 0.149 0.851
39 H 0.161 0.839
40 H 0.117 0.883
41 H 0.117 0.883
42 H 0.233 0.767
43 H 0.046 0.954
44 H 0.041 0.959
45 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -27.770 -4.533 7.057 29.009
hybrid contribution 0.531 -0.087 0.181 0.568
sum -27.239 -4.620 7.238 28.560
Atomic orbital electron populations
1.22052 0.94266 1.01755 1.01986 1.19556 0.94959 0.95841 0.92471
1.22000 1.00842 0.93209 1.02198 1.22154 1.00080 0.99865 0.95557
1.20077 0.90948 0.94235 0.95311 1.21140 1.00076 1.00218 0.94302
1.21445 0.95861 0.95963 0.96726 1.21185 0.93105 1.01609 0.99977
1.21620 1.01253 0.92965 0.91491 1.18880 0.91504 1.05827 0.96271
1.21139 0.81684 0.77527 0.86033 1.90985 1.78524 1.41149 1.26189
1.86589 1.16625 1.74992 1.46012 1.22803 0.87936 1.01161 0.90702
1.19932 0.86003 0.79889 0.85661 1.90695 1.84690 1.44213 1.21841
1.46065 1.07300 1.60714 1.20907 1.19552 0.76730 0.97040 0.96613
1.21063 0.90913 1.42300 1.04101 0.90127 1.24789 0.96680 0.94374
0.96738 1.69877 1.03989 1.44993 1.33906 0.86816 0.79080 0.79719
0.84079 1.19790 1.20836 1.18463 0.92453 0.92058 0.92389 0.92184
0.91907 0.93843 0.94852 0.91833 0.91129 0.84710 0.85456 0.85136
0.83938 0.88302 0.88290 0.76710 0.95440 0.95892 0.92179
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.04 6.81 37.16 0.25 -0.79 16
2 C -0.03 -0.27 0.75 -155.66 -0.12 -0.39 16
3 C -0.13 -1.30 7.66 37.16 0.28 -1.02 16
4 C -0.12 -1.27 7.47 37.16 0.28 -1.00 16
5 C -0.01 -0.05 4.76 -104.21 -0.50 -0.55 16
6 C -0.14 -1.15 8.97 -39.65 -0.36 -1.50 16
7 C -0.08 -0.61 10.04 -39.49 -0.40 -1.01 16
8 C -0.14 -1.20 10.03 -39.64 -0.40 -1.60 16
9 C -0.06 -0.60 9.62 -39.17 -0.38 -0.97 16
10 C -0.12 -1.46 5.35 -104.98 -0.56 -2.02 16
11 C 0.49 6.53 6.15 34.61 0.21 6.74 16
12 O -0.48 -6.33 8.47 -19.24 -0.16 -6.49 16
13 O -0.33 -4.93 9.03 -47.22 -0.43 -5.36 16
14 C 0.05 0.73 5.95 36.01 0.21 0.95 16
15 C 0.50 9.43 7.91 -10.98 -0.09 9.34 16
16 O -0.54 -12.21 16.50 -14.10 -0.23 -12.44 16
17 N -0.70 -13.72 5.55 -61.47 -0.34 -14.06 16
18 C 0.22 5.35 4.50 -5.19 -0.02 5.33 16
19 C -0.55 -14.71 9.83 -34.44 -0.34 -15.05 16
20 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16
21 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16
22 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16
23 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16
24 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16
25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
26 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16
27 H 0.06 0.37 7.38 -51.93 -0.38 -0.02 16
28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.06 0.38 7.59 -51.93 -0.39 -0.01 16
30 H 0.06 0.72 5.14 -51.93 -0.27 0.46 16
31 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16
32 H 0.04 0.40 7.89 -51.93 -0.41 -0.01 16
33 H 0.03 0.31 7.77 -51.93 -0.40 -0.09 16
34 H 0.06 0.70 7.07 -51.92 -0.37 0.33 16
35 H 0.07 0.87 4.83 -52.91 -0.26 0.61 16
36 H 0.14 0.83 5.89 -52.48 -0.31 0.52 16
37 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16
38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16
39 H 0.14 1.61 7.63 -52.49 -0.40 1.21 16
40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16
41 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16
42 H 0.40 6.74 8.32 -40.82 -0.34 6.40 16
43 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16
44 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16
45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16
LS Contribution 361.39 15.07 5.45 5.45
Total: -1.00 -32.26 361.39 -7.99 -40.25
By element:
Atomic # 1 Polarization: 9.38 SS G_CDS: -6.37 Total: 3.00 kcal
Atomic # 6 Polarization: 0.56 SS G_CDS: -2.00 Total: -1.44 kcal
Atomic # 7 Polarization: -39.88 SS G_CDS: 0.43 Total: -39.45 kcal
Atomic # 8 Polarization: -23.47 SS G_CDS: -0.82 Total: -24.29 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -32.26 -7.99 -40.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000771429934.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.751 kcal
(2) G-P(sol) polarization free energy of solvation -32.260 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.002 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds