Wall clock time and date at job start Tue Mar 31 2020 13:12:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47148 * 2 1
4 4 C 1.53000 * 109.47289 * 240.00131 * 2 1 3
5 5 C 1.50702 * 109.47384 * 119.99869 * 2 1 3
6 6 C 1.37963 * 120.07648 * 357.74371 * 5 2 1
7 7 C 1.38338 * 120.14978 * 180.02562 * 6 5 2
8 8 C 1.38391 * 120.30633 * 359.97438 * 7 6 5
9 9 C 1.37926 * 120.14754 * 359.97438 * 8 7 6
10 10 C 1.39611 * 120.07483 * 178.01505 * 5 2 1
11 11 C 1.47727 * 120.15098 * 0.02562 * 10 5 2
12 12 O 1.21464 * 120.00219 * 353.74210 * 11 10 5
13 13 O 1.34719 * 119.99636 * 173.73710 * 11 10 5
14 14 C 1.45196 * 116.99523 * 180.02562 * 13 11 10
15 15 C 1.50701 * 109.46763 * 180.02562 * 14 13 11
16 16 O 1.21276 * 120.00292 * 359.97438 * 15 14 13
17 17 N 1.34776 * 119.99933 * 179.97438 * 15 14 13
18 18 C 1.46498 * 120.00185 * 179.97438 * 17 15 14
19 19 C 1.50705 * 109.47426 * 180.02562 * 18 17 15
20 20 H 1.07997 * 119.99568 * 0.02562 * 19 18 17
21 21 C 1.37872 * 119.99918 * 180.02562 * 19 18 17
22 22 N 1.31519 * 119.99689 * 180.02562 * 21 19 18
23 23 Si 1.86793 * 120.00241 * 0.02562 * 21 19 18
24 24 H 1.48498 * 109.47387 * 90.00241 * 23 21 19
25 25 H 1.48503 * 109.47053 * 210.00083 * 23 21 19
26 26 H 1.48501 * 109.47184 * 329.99746 * 23 21 19
27 27 H 1.08999 * 109.47008 * 299.99418 * 1 2 3
28 28 H 1.08996 * 109.47489 * 59.99860 * 1 2 3
29 29 H 1.08998 * 109.47182 * 180.02562 * 1 2 3
30 30 H 1.08996 * 109.47355 * 154.87022 * 3 2 1
31 31 H 1.08995 * 109.47466 * 274.87406 * 3 2 1
32 32 H 1.09005 * 109.47155 * 34.87282 * 3 2 1
33 33 H 1.09003 * 109.47041 * 333.84598 * 4 2 1
34 34 H 1.09009 * 109.47098 * 93.84270 * 4 2 1
35 35 H 1.08993 * 109.47180 * 213.84312 * 4 2 1
36 36 H 1.08005 * 119.92257 * 0.03294 * 6 5 2
37 37 H 1.08004 * 119.84564 * 179.97438 * 7 6 5
38 38 H 1.08001 * 119.92782 * 180.02562 * 8 7 6
39 39 H 1.08002 * 120.07469 * 180.02562 * 9 8 7
40 40 H 1.09004 * 109.46912 * 299.99376 * 14 13 11
41 41 H 1.08996 * 109.47874 * 59.99513 * 14 13 11
42 42 H 0.97005 * 120.00327 * 359.97438 * 17 15 14
43 43 H 1.08996 * 109.47017 * 300.00161 * 18 17 15
44 44 H 1.09003 * 109.47219 * 60.00210 * 18 17 15
45 45 H 0.96995 * 119.99810 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 2.0324 -0.7104 1.2305
6 6 1.1382 -1.1944 2.1629
7 6 1.5977 -1.8463 3.2933
8 6 2.9557 -2.0181 3.4968
9 6 3.8607 -1.5401 2.5721
10 6 3.4040 -0.8752 1.4322
11 6 4.3676 -0.3537 0.4413
12 8 3.9683 0.1179 -0.6044
13 8 5.6893 -0.4012 0.6976
14 6 6.5776 0.1297 -0.3209
15 6 8.0066 -0.0081 0.1376
16 8 8.2521 -0.5044 1.2166
17 7 9.0118 0.4202 -0.6515
18 6 10.4008 0.2868 -0.2056
19 6 11.3229 0.8377 -1.2627
20 1 10.9150 1.2467 -2.1752
21 6 12.6873 0.8195 -1.0648
22 7 13.4919 1.3008 -1.9871
23 14 13.3929 0.1114 0.5131
24 1 13.6499 -1.3400 0.3329
25 1 14.6659 0.8027 0.8400
26 1 12.4239 0.3088 1.6210
27 1 -0.3633 0.5137 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0276 0.0005
30 1 3.0382 1.4750 0.4364
31 1 2.0788 1.8142 -1.0239
32 1 1.3662 2.0661 0.5876
33 1 1.2914 -1.4385 -1.5857
34 1 2.2261 0.0071 -2.0387
35 1 2.9658 -1.2458 -1.0134
36 1 0.0770 -1.0642 2.0100
37 1 0.8933 -2.2229 4.0203
38 1 3.3078 -2.5283 4.3812
39 1 4.9202 -1.6751 2.7319
40 1 6.4391 -0.4251 -1.2489
41 1 6.3496 1.1821 -0.4893
42 1 8.8155 0.8168 -1.5147
43 1 10.5395 0.8419 0.7221
44 1 10.6288 -0.7657 -0.0368
45 1 14.4518 1.2877 -1.8481
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000771429934.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:12:00
Heat of formation + Delta-G solvation = -93.006490 kcal
Electronic energy + Delta-G solvation = -26620.396215 eV
Core-core repulsion = 22796.298857 eV
Total energy + Delta-G solvation = -3824.097357 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.33385 -40.81635 -39.87024 -38.06261 -36.64642 -36.20288 -34.47875 -32.65870
-31.17272 -30.96740 -28.85521 -28.20272 -28.15627 -25.33646 -24.02603 -23.82697
-22.05112 -21.73244 -20.10842 -19.48633 -19.01366 -18.34444 -17.93759 -17.61599
-16.95968 -16.55586 -16.44162 -16.02212 -15.98758 -15.43851 -15.23280 -15.13851
-14.90888 -14.83532 -14.50504 -14.27463 -14.02799 -13.76589 -13.32430 -13.22444
-13.09431 -12.88813 -12.79456 -12.70032 -12.51385 -12.36221 -11.94680 -11.83295
-11.72506 -11.68365 -11.50397 -11.38339 -11.01662 -10.93636 -10.80379 -10.06285
-10.00860 -9.75761 -8.41273 -6.48948 -0.31624 0.37463 1.22722 1.32682
1.35860 1.45923 1.47751 1.51774 2.27123 2.47826 2.76630 2.94042
3.53695 3.58733 3.65815 3.82169 4.03824 4.03968 4.04879 4.17332
4.20459 4.35738 4.43594 4.48300 4.72707 4.76849 4.80996 4.82820
4.90514 4.91469 4.98591 5.03622 5.14788 5.17511 5.20705 5.23394
5.24510 5.37731 5.40804 5.42941 5.50746 5.52941 5.65328 5.91328
6.04437 6.50420 6.60703 6.71826 7.09947 7.25376 8.73324
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.024141 B = 0.002539 C = 0.002338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1159.552541 B =11024.020049 C =11974.943147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.030 4.030
3 C -0.123 4.123
4 C -0.117 4.117
5 C -0.015 4.015
6 C -0.137 4.137
7 C -0.072 4.072
8 C -0.141 4.141
9 C -0.074 4.074
10 C -0.147 4.147
11 C 0.487 3.513
12 O -0.482 6.482
13 O -0.347 6.347
14 C 0.061 3.939
15 C 0.505 3.495
16 O -0.578 6.578
17 N -0.697 5.697
18 C 0.233 3.767
19 C -0.548 4.548
20 H 0.061 0.939
21 C 0.027 3.973
22 N -0.930 5.930
23 Si 0.937 3.063
24 H -0.265 1.265
25 H -0.273 1.273
26 H -0.259 1.259
27 H 0.070 0.930
28 H 0.064 0.936
29 H 0.068 0.932
30 H 0.038 0.962
31 H 0.057 0.943
32 H 0.055 0.945
33 H 0.044 0.956
34 H 0.054 0.946
35 H 0.050 0.950
36 H 0.161 0.839
37 H 0.163 0.837
38 H 0.151 0.849
39 H 0.126 0.874
40 H 0.122 0.878
41 H 0.122 0.878
42 H 0.413 0.587
43 H 0.017 0.983
44 H 0.016 0.984
45 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.931 -5.122 8.047 32.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.030 4.030
3 C -0.180 4.180
4 C -0.174 4.174
5 C -0.015 4.015
6 C -0.154 4.154
7 C -0.089 4.089
8 C -0.159 4.159
9 C -0.092 4.092
10 C -0.148 4.148
11 C 0.334 3.666
12 O -0.372 6.372
13 O -0.263 6.263
14 C -0.015 4.015
15 C 0.291 3.709
16 O -0.458 6.458
17 N -0.348 5.348
18 C 0.109 3.891
19 C -0.586 4.586
20 H 0.079 0.921
21 C -0.174 4.174
22 N -0.569 5.569
23 Si 0.761 3.239
24 H -0.189 1.189
25 H -0.198 1.198
26 H -0.183 1.183
27 H 0.088 0.912
28 H 0.083 0.917
29 H 0.087 0.913
30 H 0.057 0.943
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.063 0.937
34 H 0.073 0.927
35 H 0.069 0.931
36 H 0.179 0.821
37 H 0.181 0.819
38 H 0.169 0.831
39 H 0.144 0.856
40 H 0.140 0.860
41 H 0.140 0.860
42 H 0.249 0.751
43 H 0.035 0.965
44 H 0.034 0.966
45 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -30.626 -5.277 8.421 32.198
hybrid contribution 1.319 0.151 -0.276 1.356
sum -29.307 -5.126 8.145 30.847
Atomic orbital electron populations
1.22028 0.92039 1.02745 1.02845 1.19582 0.96712 0.94912 0.91793
1.21964 0.99978 0.94257 1.01848 1.22087 0.99528 0.99766 0.95982
1.20237 0.90498 0.94717 0.96090 1.21493 1.01020 0.99191 0.93742
1.21866 0.95835 0.94393 0.96848 1.21474 0.93500 1.01005 0.99924
1.21620 1.01093 0.94181 0.92308 1.18970 0.91958 1.07320 0.96534
1.21500 0.81071 0.77497 0.86524 1.90976 1.78308 1.41493 1.26445
1.86580 1.17710 1.75532 1.46500 1.22684 0.84900 1.02961 0.91001
1.20580 0.87478 0.78239 0.84644 1.90671 1.85589 1.45874 1.23648
1.45858 1.06068 1.61126 1.21771 1.19171 0.78643 0.96031 0.95229
1.21264 0.91574 1.41724 1.04034 0.92055 1.25596 0.97226 0.94780
0.99788 1.69979 1.04534 1.46486 1.35881 0.85861 0.78531 0.79357
0.80183 1.18939 1.19845 1.18332 0.91156 0.91712 0.91290 0.94327
0.92397 0.92629 0.93712 0.92729 0.93131 0.82109 0.81910 0.83110
0.85569 0.85997 0.86036 0.75097 0.96527 0.96611 0.91794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.62 6.81 71.98 0.49 -1.13 16
2 C -0.03 -0.54 0.75 -52.93 -0.04 -0.58 16
3 C -0.12 -2.46 7.66 71.98 0.55 -1.91 16
4 C -0.12 -2.40 7.47 71.98 0.54 -1.86 16
5 C -0.02 -0.28 4.76 -19.60 -0.09 -0.38 16
6 C -0.14 -1.81 8.97 22.23 0.20 -1.61 16
7 C -0.07 -0.82 10.04 22.33 0.22 -0.59 16
8 C -0.14 -2.13 10.03 22.23 0.22 -1.90 16
9 C -0.07 -1.59 9.62 22.54 0.22 -1.37 16
10 C -0.15 -3.44 5.35 -20.10 -0.11 -3.55 16
11 C 0.49 13.18 6.15 70.33 0.43 13.61 16
12 O -0.48 -12.84 8.47 19.95 0.17 -12.67 16
13 O -0.35 -10.66 9.03 -49.90 -0.45 -11.11 16
14 C 0.06 1.73 5.95 71.24 0.42 2.15 16
15 C 0.50 19.01 7.91 87.66 0.69 19.70 16
16 O -0.58 -26.67 16.50 15.78 0.26 -26.41 16
17 N -0.70 -27.36 5.55 -466.79 -2.59 -29.95 16
18 C 0.23 11.26 4.50 85.63 0.38 11.65 16
19 C -0.55 -29.92 9.83 25.60 0.25 -29.67 16
20 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16
21 C 0.03 1.49 5.47 84.65 0.46 1.96 16
22 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16
23 Si 0.94 43.69 27.47 68.60 1.88 45.57 16
24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16
25 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16
26 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16
27 H 0.07 0.64 7.38 -2.39 -0.02 0.63 16
28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.07 0.66 7.59 -2.39 -0.02 0.64 16
30 H 0.04 0.93 5.14 -2.39 -0.01 0.92 16
31 H 0.06 1.17 7.45 -2.39 -0.02 1.16 16
32 H 0.05 0.94 7.89 -2.38 -0.02 0.92 16
33 H 0.04 0.79 7.77 -2.39 -0.02 0.77 16
34 H 0.05 1.18 7.07 -2.38 -0.02 1.17 16
35 H 0.05 1.24 4.83 -17.84 -0.09 1.16 16
36 H 0.16 1.25 5.89 -2.91 -0.02 1.23 16
37 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16
38 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16
39 H 0.13 3.03 7.63 -2.91 -0.02 3.01 16
40 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16
41 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16
42 H 0.41 13.86 8.32 -92.70 -0.77 13.09 16
43 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16
44 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16
45 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16
Total: -1.00 -70.84 361.39 4.54 -66.31
By element:
Atomic # 1 Polarization: 18.61 SS G_CDS: 0.11 Total: 18.72 kcal
Atomic # 6 Polarization: -0.34 SS G_CDS: 4.85 Total: 4.51 kcal
Atomic # 7 Polarization: -82.63 SS G_CDS: -2.29 Total: -84.92 kcal
Atomic # 8 Polarization: -50.17 SS G_CDS: -0.02 Total: -50.19 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal
Total: -70.84 4.54 -66.31 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000771429934.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.701 kcal
(2) G-P(sol) polarization free energy of solvation -70.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.544 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds