Wall clock time and date at job start Tue Mar 31 2020 12:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.52148 * 2 1 4 4 C 1.34779 * 120.00289 * 59.87193 * 3 2 1 5 5 O 1.21284 * 119.99625 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00385 * 179.97438 * 4 3 2 7 7 C 1.50698 * 109.47513 * 180.02562 * 6 4 3 8 8 C 1.38300 * 119.93191 * 269.73429 * 7 6 4 9 9 C 1.38101 * 120.06759 * 179.72490 * 8 7 6 10 10 C 1.38878 * 119.93130 * 0.51946 * 9 8 7 11 11 O 1.35750 * 120.06724 * 179.72777 * 10 9 8 12 12 C 1.34834 * 116.99656 * 174.48473 * 11 10 9 13 13 H 1.07999 * 120.00264 * 5.06735 * 12 11 10 14 14 C 1.38651 * 119.99924 * 185.05717 * 12 11 10 15 15 N 1.31556 * 120.00179 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99914 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46765 * 90.00120 * 16 14 12 18 18 H 1.48497 * 109.47245 * 209.99962 * 16 14 12 19 19 H 1.48498 * 109.47380 * 330.00319 * 16 14 12 20 20 C 1.38883 * 119.85941 * 359.75192 * 10 9 8 21 21 C 1.38091 * 119.93316 * 359.97438 * 20 10 9 22 22 C 1.53173 * 109.52223 * 239.87471 * 2 1 3 23 23 C 1.53182 * 109.03713 * 183.05131 * 22 2 1 24 24 C 1.53098 * 109.16108 * 56.97967 * 23 22 2 25 25 O 1.42907 * 109.41316 * 302.39009 * 24 23 22 26 26 C 1.42907 * 114.09530 * 61.16091 * 25 24 23 27 27 H 1.08990 * 109.47308 * 180.12549 * 1 2 3 28 28 H 1.08997 * 109.47091 * 300.12699 * 1 2 3 29 29 H 1.09001 * 109.47016 * 60.12805 * 1 2 3 30 30 H 0.97005 * 119.99990 * 239.87170 * 3 2 1 31 31 H 1.09000 * 109.47111 * 300.00355 * 6 4 3 32 32 H 1.08998 * 109.46664 * 60.00201 * 6 4 3 33 33 H 1.08004 * 119.96404 * 359.96664 * 8 7 6 34 34 H 1.07995 * 120.03231 * 180.26857 * 9 8 7 35 35 H 0.96993 * 120.00065 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.02805 * 180.02562 * 20 10 9 37 37 H 1.08003 * 119.97132 * 180.02562 * 21 20 10 38 38 H 1.08996 * 109.54813 * 63.18699 * 22 2 1 39 39 H 1.08999 * 109.54262 * 302.91571 * 22 2 1 40 40 H 1.08994 * 109.52238 * 297.07634 * 23 22 2 41 41 H 1.08993 * 109.57705 * 176.91428 * 23 22 2 42 42 H 1.08996 * 109.47952 * 62.37668 * 24 23 22 43 43 H 1.09003 * 109.47775 * 182.41392 * 24 23 22 44 44 H 1.09001 * 109.47824 * 178.85406 * 26 25 24 45 45 H 1.09005 * 109.48742 * 58.82992 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3808 0.0000 4 6 1.6926 2.2118 1.0095 5 8 0.9934 1.8162 1.9182 6 6 2.1966 3.6320 1.0098 7 6 1.6928 4.3436 2.2389 8 6 0.4877 5.0210 2.1988 9 6 0.0206 5.6694 3.3251 10 6 0.7675 5.6498 4.4958 11 8 0.3136 6.2908 5.6029 12 6 1.0289 6.1373 6.7356 13 1 1.9621 5.5942 6.7154 14 6 0.5664 6.6769 7.9261 15 7 1.2645 6.5276 9.0311 16 14 -1.0481 7.6159 7.9610 17 1 -2.1619 6.6751 8.2430 18 1 -0.9949 8.6525 9.0230 19 1 -1.2709 8.2666 6.6449 20 6 1.9799 4.9734 4.5312 21 6 2.4389 4.3222 3.4033 22 6 2.0419 -0.7246 -1.2487 23 6 3.5717 -0.7851 -1.1994 24 6 4.0057 -1.4794 0.0942 25 8 3.4707 -0.7727 1.2152 26 6 2.0428 -0.7246 1.2472 27 1 -0.3633 -1.0276 0.0023 28 1 -0.3633 0.5158 0.8888 29 1 -0.3633 0.5118 -0.8911 30 1 2.5791 1.6970 -0.7266 31 1 3.2866 3.6306 1.0124 32 1 1.8360 4.1456 0.1187 33 1 -0.0905 5.0397 1.2867 34 1 -0.9226 6.1945 3.2944 35 1 0.9408 6.9047 9.8640 36 1 2.5628 4.9560 5.4403 37 1 3.3815 3.7957 3.4302 38 1 1.7271 -0.1819 -2.1400 39 1 1.6376 -1.7365 -1.2745 40 1 3.9772 0.2263 -1.2236 41 1 3.9428 -1.3469 -2.0564 42 1 3.6338 -2.5040 0.0992 43 1 5.0940 -1.4872 0.1551 44 1 1.7171 -0.1887 2.1388 45 1 1.6452 -1.7393 1.2675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771827738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:46 Heat of formation + Delta-G solvation = -111.271152 kcal Electronic energy + Delta-G solvation = -26824.444405 eV Core-core repulsion = 22999.555032 eV Total energy + Delta-G solvation = -3824.889372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65100 -40.85380 -39.60713 -38.25149 -36.31138 -34.52521 -33.61234 -33.17627 -31.93748 -31.76622 -28.34466 -27.88785 -26.74474 -26.12255 -23.71674 -23.46898 -22.58084 -21.37438 -20.39533 -19.81362 -19.11182 -18.15168 -17.57473 -16.92919 -16.76730 -16.54542 -16.12617 -16.04962 -15.69622 -15.57053 -15.28203 -15.17229 -15.03070 -14.63724 -14.34010 -14.21692 -14.07276 -13.85154 -13.58438 -13.38517 -13.06032 -13.02024 -12.84940 -12.63660 -12.48319 -12.38653 -12.29206 -12.06288 -11.92374 -11.70585 -11.42283 -11.28051 -10.91829 -10.65549 -10.47209 -9.80275 -9.77732 -8.96837 -8.50782 -6.23443 0.59181 0.63247 1.29562 1.34749 1.51116 1.82434 2.27643 2.28019 2.78764 2.98934 3.06840 3.19185 3.58180 3.82604 3.86610 3.89177 4.01917 4.04444 4.16317 4.22575 4.31900 4.44689 4.48578 4.53468 4.58742 4.70279 4.72341 4.76920 4.81898 4.83337 4.85172 4.95158 4.99295 5.04057 5.15618 5.26016 5.29080 5.35124 5.38507 5.57304 5.66102 5.75123 5.80442 5.91522 6.25544 6.29677 6.73907 6.83421 7.46637 7.58238 8.61319 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.002613 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.235596 B =10714.513099 C =11021.683893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 N -0.705 5.705 4 C 0.514 3.486 5 O -0.570 6.570 6 C -0.081 4.081 7 C -0.133 4.133 8 C -0.058 4.058 9 C -0.193 4.193 10 C 0.118 3.882 11 O -0.246 6.246 12 C -0.400 4.400 13 H 0.077 0.923 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.973 3.027 17 H -0.267 1.267 18 H -0.264 1.264 19 H -0.261 1.261 20 C -0.239 4.239 21 C -0.066 4.066 22 C -0.117 4.117 23 C -0.151 4.151 24 C 0.045 3.955 25 O -0.402 6.402 26 C 0.048 3.952 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.413 0.587 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.285 0.715 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 -15.101 -29.179 33.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 N -0.359 5.359 4 C 0.301 3.699 5 O -0.449 6.449 6 C -0.121 4.121 7 C -0.134 4.134 8 C -0.076 4.076 9 C -0.212 4.212 10 C 0.069 3.931 11 O -0.154 6.154 12 C -0.477 4.477 13 H 0.095 0.905 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.795 3.205 17 H -0.192 1.192 18 H -0.189 1.189 19 H -0.186 1.186 20 C -0.258 4.258 21 C -0.084 4.084 22 C -0.155 4.155 23 C -0.189 4.189 24 C -0.031 4.031 25 O -0.321 6.321 26 C -0.030 4.030 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.251 0.749 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.617 -15.129 -28.156 32.070 hybrid contribution -0.122 0.273 0.810 0.863 sum 2.496 -14.856 -27.346 31.221 Atomic orbital electron populations 1.22113 0.93929 1.03034 1.02806 1.20944 0.94441 0.82143 0.96594 1.45863 1.53681 1.10916 1.25432 1.21003 0.79422 0.88245 0.81197 1.90689 1.39155 1.77801 1.37232 1.20551 1.03416 0.90705 0.97391 1.19281 0.96443 1.02360 0.95311 1.20929 0.94876 0.94527 0.97230 1.20507 1.01490 1.07571 0.91588 1.19664 0.93422 0.92204 0.87796 1.83506 1.51090 1.64210 1.16545 1.20706 1.05164 1.37133 0.84651 0.90524 1.25316 1.02678 0.98051 0.92938 1.69734 1.40707 1.46229 0.99969 0.85185 0.77953 0.78615 0.78729 1.19242 1.18874 1.18558 1.21229 0.98342 1.05929 1.00278 1.20872 0.99515 0.96257 0.91735 1.21899 0.95984 1.01701 0.95910 1.22190 0.95608 1.02586 0.98482 1.22857 0.99608 0.94936 0.85688 1.87986 1.20304 1.76891 1.46912 1.23008 0.81083 0.99697 0.99175 0.90594 0.93308 0.90989 0.74946 0.86361 0.84866 0.82822 0.85337 0.90546 0.87825 0.85522 0.88696 0.89169 0.90816 0.88184 0.92514 0.88254 0.90585 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.42 71.98 0.61 -2.16 16 2 C 0.15 2.29 0.68 3.69 0.00 2.29 16 3 N -0.71 -11.18 4.74 -422.52 -2.00 -13.19 16 4 C 0.51 12.25 7.24 87.66 0.63 12.89 16 5 O -0.57 -19.63 12.25 -3.04 -0.04 -19.66 16 6 C -0.08 -1.64 5.83 29.10 0.17 -1.47 16 7 C -0.13 -4.21 4.38 -19.83 -0.09 -4.30 16 8 C -0.06 -1.89 9.69 22.25 0.22 -1.67 16 9 C -0.19 -7.90 9.99 22.39 0.22 -7.68 16 10 C 0.12 5.94 6.65 22.58 0.15 6.09 16 11 O -0.25 -14.17 8.59 -22.78 -0.20 -14.36 16 12 C -0.40 -24.93 9.95 67.92 0.68 -24.26 16 13 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 14 C 0.01 0.49 5.49 84.83 0.47 0.96 16 15 N -0.93 -57.54 13.96 21.61 0.30 -57.24 16 16 Si 0.97 47.38 28.62 68.60 1.96 49.34 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 20 C -0.24 -11.48 9.17 22.39 0.21 -11.28 16 21 C -0.07 -2.52 9.69 22.25 0.22 -2.30 16 22 C -0.12 -0.94 4.85 30.71 0.15 -0.79 16 23 C -0.15 -1.13 5.95 30.69 0.18 -0.94 16 24 C 0.05 0.58 6.84 72.02 0.49 1.07 16 25 O -0.40 -9.01 10.67 -148.98 -1.59 -10.60 16 26 C 0.05 1.05 5.41 72.01 0.39 1.44 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.24 6.16 -2.39 -0.01 1.22 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.41 3.74 7.52 -92.70 -0.70 3.05 16 31 H 0.12 1.88 8.08 -2.39 -0.02 1.86 16 32 H 0.13 1.67 8.08 -2.39 -0.02 1.65 16 33 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 35 H 0.28 16.18 8.31 -92.71 -0.77 15.41 16 36 H 0.10 5.48 5.64 -2.91 -0.02 5.46 16 37 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.55 7.10 -2.39 -0.02 0.53 16 41 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 42 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 2.33 6.14 -2.39 -0.01 2.31 16 45 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -80.80 362.15 3.44 -77.36 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.31 Total: 20.46 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 4.69 Total: -32.10 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -1.70 Total: -70.43 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.82 Total: -44.63 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.96 Total: 49.34 kcal Total: -80.80 3.44 -77.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771827738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.914 kcal (2) G-P(sol) polarization free energy of solvation -80.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds