Wall clock time and date at job start Tue Mar 31 2020 13:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 N 1.46501 * 109.46637 * 120.00193 * 2 1 3 5 5 S 1.65596 * 119.99644 * 277.43952 * 4 2 1 6 6 O 1.42100 * 104.27539 * 176.24650 * 5 4 2 7 7 O 1.42096 * 104.28164 * 304.10201 * 5 4 2 8 8 C 1.81400 * 104.44921 * 60.17705 * 5 4 2 9 9 C 1.53007 * 109.47105 * 171.46006 * 8 5 4 10 10 C 1.52995 * 109.46968 * 180.02562 * 9 8 5 11 11 C 1.50697 * 109.47223 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00036 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00359 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99859 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00321 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46721 * 60.00049 * 15 13 11 17 17 H 1.48495 * 109.47279 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46712 * 300.00148 * 15 13 11 19 19 C 1.52994 * 109.47067 * 239.99828 * 2 1 3 20 20 C 1.53176 * 109.54455 * 174.82100 * 19 2 1 21 21 C 1.53102 * 109.16202 * 183.24388 * 20 19 2 22 22 O 1.42903 * 109.48518 * 57.47501 * 21 20 19 23 23 C 1.42905 * 114.09931 * 298.88888 * 22 21 20 24 24 C 1.53087 * 109.41063 * 61.16114 * 23 22 21 25 25 H 1.08997 * 109.47231 * 293.15329 * 1 2 3 26 26 H 1.08999 * 109.46658 * 53.15082 * 1 2 3 27 27 H 1.09002 * 109.47143 * 173.14864 * 1 2 3 28 28 H 1.09003 * 109.46987 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47482 * 300.00037 * 3 2 1 30 30 H 1.09000 * 109.46867 * 59.99689 * 3 2 1 31 31 H 0.96996 * 120.00031 * 97.45148 * 4 2 1 32 32 H 1.08995 * 109.46849 * 291.45942 * 8 5 4 33 33 H 1.08996 * 109.46979 * 51.46265 * 8 5 4 34 34 H 1.09004 * 109.46701 * 299.99442 * 9 8 5 35 35 H 1.08992 * 109.47210 * 59.99815 * 9 8 5 36 36 H 1.09005 * 109.47395 * 299.99855 * 10 9 8 37 37 H 1.09005 * 109.47619 * 59.99649 * 10 9 8 38 38 H 0.97007 * 119.99924 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.54931 * 295.00427 * 19 2 1 40 40 H 1.09001 * 109.52580 * 303.06383 * 20 19 2 41 41 H 1.09002 * 109.52087 * 63.25031 * 20 19 2 42 42 H 1.09005 * 109.40756 * 297.49486 * 21 20 19 43 43 H 1.09001 * 109.48663 * 177.51028 * 21 20 19 44 44 H 1.09002 * 109.47857 * 301.17910 * 23 22 21 45 45 H 1.08996 * 109.48614 * 181.15087 * 23 22 21 46 46 H 1.09001 * 109.51941 * 182.48900 * 24 23 22 47 47 H 1.09000 * 109.52838 * 62.29747 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 16 2.1191 0.1196 2.6368 6 8 2.5366 -0.8701 3.5671 7 8 2.9365 1.2458 2.3492 8 6 0.4164 0.6407 2.9832 9 6 0.3378 1.2193 4.3975 10 6 -1.0984 1.6582 4.6898 11 6 -1.1760 2.2274 6.0830 12 1 -0.2897 2.2713 6.6985 13 6 -2.3785 2.6922 6.5718 14 7 -3.4579 2.6382 5.8225 15 14 -2.4746 3.3985 8.2985 16 1 -1.5672 4.5691 8.4056 17 1 -3.8685 3.8243 8.5823 18 1 -2.0643 2.3627 9.2804 19 6 2.0400 -0.7213 -1.2492 20 6 3.5662 -0.6104 -1.3177 21 6 4.0600 -1.2641 -2.6112 22 8 3.4343 -0.6357 -3.7318 23 6 2.0099 -0.7502 -3.7448 24 6 1.4337 -0.0739 -2.4982 25 1 -0.3633 0.4041 0.9449 26 1 -0.3632 0.6163 -0.8224 27 1 -0.3633 -1.0203 -0.1226 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.2826 -1.6225 1.1443 32 1 0.1155 1.4009 2.2624 33 1 -0.2496 -0.2185 2.9046 34 1 0.6388 0.4589 5.1182 35 1 1.0038 2.0784 4.4761 36 1 -1.3999 2.4183 3.9690 37 1 -1.7642 0.7987 4.6113 38 1 -4.3041 2.9649 6.1666 39 1 1.7523 -1.7717 -1.2068 40 1 3.8560 0.4404 -1.3085 41 1 4.0072 -1.1183 -0.4600 42 1 3.8068 -2.3243 -2.6007 43 1 5.1413 -1.1492 -2.6868 44 1 1.7300 -1.8036 -3.7492 45 1 1.6143 -0.2652 -4.6372 46 1 0.3510 -0.1985 -2.4838 47 1 1.6790 0.9881 -2.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785397348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:11 Heat of formation + Delta-G solvation = -139.246947 kcal Electronic energy + Delta-G solvation = -26381.173819 eV Core-core repulsion = 22690.515276 eV Total energy + Delta-G solvation = -3690.658543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.33719 -37.85146 -36.77897 -35.73946 -34.73673 -33.08081 -32.25771 -31.58519 -30.13182 -27.95229 -27.47262 -25.52997 -23.75652 -23.68966 -21.70990 -20.59228 -19.51406 -19.04167 -17.65290 -16.82166 -16.45900 -16.35055 -16.12681 -15.81888 -15.19571 -15.06739 -14.71262 -14.49982 -14.28066 -14.09523 -13.75237 -13.47280 -13.12730 -12.72225 -12.59918 -12.36398 -12.18298 -11.96742 -11.95386 -11.86307 -11.77930 -11.60425 -11.42350 -11.20787 -11.14106 -10.94566 -10.90679 -10.80081 -10.70406 -10.49058 -10.34814 -9.96253 -9.84396 -9.64983 -9.34890 -9.11092 -8.41886 -6.07144 -4.10234 0.47713 2.81864 3.31106 3.34989 3.38201 3.57758 3.92162 4.19651 4.30161 4.41195 4.42580 4.48909 4.68405 4.75593 4.88391 4.89499 4.96743 5.04018 5.14424 5.18770 5.21463 5.29369 5.32827 5.36462 5.41453 5.47183 5.57416 5.68363 5.70659 5.77182 5.78666 5.81997 5.95120 6.06945 6.16087 6.24809 6.34606 6.44332 6.84675 6.88488 6.92970 7.54785 7.64913 7.90703 8.31328 8.95743 9.54527 11.04015 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027509 B = 0.002835 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.594018 B = 9873.418803 C =10470.515191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.181 3.819 3 C -0.180 4.180 4 N -1.115 6.115 5 S 2.600 3.400 6 O -0.967 6.967 7 O -0.959 6.959 8 C -0.614 4.614 9 C -0.105 4.105 10 C 0.032 3.968 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.082 4.082 20 C -0.157 4.157 21 C 0.061 3.939 22 O -0.384 6.384 23 C 0.061 3.939 24 C -0.155 4.155 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.195 -8.646 -20.024 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.093 3.907 3 C -0.238 4.238 4 N -0.872 5.872 5 S 2.696 3.304 6 O -0.957 6.957 7 O -0.949 6.949 8 C -0.745 4.745 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.566 4.566 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.102 4.102 20 C -0.194 4.194 21 C -0.016 4.016 22 O -0.303 6.303 23 C -0.016 4.016 24 C -0.193 4.193 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.883 -8.191 -19.666 23.922 hybrid contribution -1.034 -0.210 0.974 1.436 sum 9.849 -8.401 -18.692 22.737 Atomic orbital electron populations 1.22758 0.94531 1.03253 1.04205 1.20136 0.93378 0.92567 0.84624 1.22710 1.03887 0.93805 1.03425 1.55804 1.82522 1.24570 1.24340 1.05293 0.78241 0.74398 0.72451 1.93566 1.81228 1.59241 1.61673 1.93604 1.64970 1.53141 1.83187 1.30802 1.22800 1.11754 1.09173 1.21504 1.04131 0.99865 0.88957 1.19047 0.88156 0.96617 0.96833 1.21217 0.94915 1.40829 0.99592 0.92436 1.25014 0.95726 0.95820 0.97768 1.69947 0.99735 1.46971 1.36793 0.86616 0.77026 0.79603 0.84556 1.20104 1.21237 1.20115 1.21361 0.95459 0.99838 0.93492 1.22363 0.95446 1.03330 0.98285 1.22600 0.97829 0.95604 0.85584 1.87937 1.19389 1.77865 1.45104 1.22580 0.81163 0.99631 0.98195 1.22389 1.01080 1.01611 0.94204 0.90663 0.90759 0.91594 0.89909 0.90986 0.90964 0.75330 0.85090 0.85187 0.91421 0.91806 0.96149 0.96153 0.92838 0.90477 0.89931 0.90499 0.93392 0.88900 0.93331 0.88857 0.90123 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 7.95 37.16 0.30 -1.34 16 2 C 0.18 1.67 0.63 -131.82 -0.08 1.59 16 3 C -0.18 -1.92 6.35 37.16 0.24 -1.69 16 4 N -1.12 -11.52 4.94 0.54 0.00 -11.52 16 5 S 2.60 37.51 4.99 -107.50 -0.54 36.98 16 6 O -0.97 -17.08 18.08 -57.54 -1.04 -18.12 16 7 O -0.96 -15.88 14.49 -57.54 -0.83 -16.71 16 8 C -0.61 -9.28 4.22 37.16 0.16 -9.13 16 9 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 10 C 0.03 0.80 4.97 -27.89 -0.14 0.66 16 11 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.08 -0.62 1.69 -90.44 -0.15 -0.77 16 20 C -0.16 -1.27 4.88 -26.59 -0.13 -1.40 16 21 C 0.06 0.46 6.84 37.21 0.25 0.71 16 22 O -0.38 -3.54 10.77 -35.23 -0.38 -3.92 16 23 C 0.06 0.42 6.84 37.20 0.25 0.68 16 24 C -0.15 -1.05 4.65 -26.59 -0.12 -1.17 16 25 H 0.07 0.74 4.15 -51.93 -0.22 0.52 16 26 H 0.07 0.55 6.84 -51.93 -0.36 0.19 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.95 5.82 -51.93 -0.30 0.65 16 29 H 0.07 0.63 6.50 -51.93 -0.34 0.29 16 30 H 0.07 0.87 5.21 -51.93 -0.27 0.60 16 31 H 0.41 3.50 8.68 -34.47 -0.30 3.20 16 32 H 0.13 1.77 5.89 -51.93 -0.31 1.47 16 33 H 0.13 1.75 7.85 -51.93 -0.41 1.34 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.75 6.18 -51.93 -0.32 0.43 16 41 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.46 6.72 -51.93 -0.35 0.11 16 47 H 0.08 0.59 6.43 -51.93 -0.33 0.26 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -34.43 361.75 -9.27 -43.70 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.67 Total: 0.99 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 0.02 Total: -27.65 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.74 Total: -37.21 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -2.25 Total: -38.75 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 37.51 SS G_CDS: -0.54 Total: 36.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.43 -9.27 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785397348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.547 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds