Wall clock time and date at job start Tue Mar 31 2020 13:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 N 1.46501 * 109.46637 * 120.00193 * 2 1 3 5 5 S 1.65596 * 119.99644 * 277.43952 * 4 2 1 6 6 O 1.42100 * 104.27539 * 176.24650 * 5 4 2 7 7 O 1.42096 * 104.28164 * 304.10201 * 5 4 2 8 8 C 1.81400 * 104.44921 * 60.17705 * 5 4 2 9 9 C 1.53007 * 109.47105 * 171.46006 * 8 5 4 10 10 C 1.52995 * 109.46968 * 180.02562 * 9 8 5 11 11 C 1.50697 * 109.47223 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00036 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00359 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99859 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00321 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46721 * 60.00049 * 15 13 11 17 17 H 1.48495 * 109.47279 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46712 * 300.00148 * 15 13 11 19 19 C 1.52994 * 109.47067 * 239.99828 * 2 1 3 20 20 C 1.53176 * 109.54455 * 174.82100 * 19 2 1 21 21 C 1.53102 * 109.16202 * 183.24388 * 20 19 2 22 22 O 1.42903 * 109.48518 * 57.47501 * 21 20 19 23 23 C 1.42905 * 114.09931 * 298.88888 * 22 21 20 24 24 C 1.53087 * 109.41063 * 61.16114 * 23 22 21 25 25 H 1.08997 * 109.47231 * 293.15329 * 1 2 3 26 26 H 1.08999 * 109.46658 * 53.15082 * 1 2 3 27 27 H 1.09002 * 109.47143 * 173.14864 * 1 2 3 28 28 H 1.09003 * 109.46987 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47482 * 300.00037 * 3 2 1 30 30 H 1.09000 * 109.46867 * 59.99689 * 3 2 1 31 31 H 0.96996 * 120.00031 * 97.45148 * 4 2 1 32 32 H 1.08995 * 109.46849 * 291.45942 * 8 5 4 33 33 H 1.08996 * 109.46979 * 51.46265 * 8 5 4 34 34 H 1.09004 * 109.46701 * 299.99442 * 9 8 5 35 35 H 1.08992 * 109.47210 * 59.99815 * 9 8 5 36 36 H 1.09005 * 109.47395 * 299.99855 * 10 9 8 37 37 H 1.09005 * 109.47619 * 59.99649 * 10 9 8 38 38 H 0.97007 * 119.99924 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.54931 * 295.00427 * 19 2 1 40 40 H 1.09001 * 109.52580 * 303.06383 * 20 19 2 41 41 H 1.09002 * 109.52087 * 63.25031 * 20 19 2 42 42 H 1.09005 * 109.40756 * 297.49486 * 21 20 19 43 43 H 1.09001 * 109.48663 * 177.51028 * 21 20 19 44 44 H 1.09002 * 109.47857 * 301.17910 * 23 22 21 45 45 H 1.08996 * 109.48614 * 181.15087 * 23 22 21 46 46 H 1.09001 * 109.51941 * 182.48900 * 24 23 22 47 47 H 1.09000 * 109.52838 * 62.29747 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 16 2.1191 0.1196 2.6368 6 8 2.5366 -0.8701 3.5671 7 8 2.9365 1.2458 2.3492 8 6 0.4164 0.6407 2.9832 9 6 0.3378 1.2193 4.3975 10 6 -1.0984 1.6582 4.6898 11 6 -1.1760 2.2274 6.0830 12 1 -0.2897 2.2713 6.6985 13 6 -2.3785 2.6922 6.5718 14 7 -3.4579 2.6382 5.8225 15 14 -2.4746 3.3985 8.2985 16 1 -1.5672 4.5691 8.4056 17 1 -3.8685 3.8243 8.5823 18 1 -2.0643 2.3627 9.2804 19 6 2.0400 -0.7213 -1.2492 20 6 3.5662 -0.6104 -1.3177 21 6 4.0600 -1.2641 -2.6112 22 8 3.4343 -0.6357 -3.7318 23 6 2.0099 -0.7502 -3.7448 24 6 1.4337 -0.0739 -2.4982 25 1 -0.3633 0.4041 0.9449 26 1 -0.3632 0.6163 -0.8224 27 1 -0.3633 -1.0203 -0.1226 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.2826 -1.6225 1.1443 32 1 0.1155 1.4009 2.2624 33 1 -0.2496 -0.2185 2.9046 34 1 0.6388 0.4589 5.1182 35 1 1.0038 2.0784 4.4761 36 1 -1.3999 2.4183 3.9690 37 1 -1.7642 0.7987 4.6113 38 1 -4.3041 2.9649 6.1666 39 1 1.7523 -1.7717 -1.2068 40 1 3.8560 0.4404 -1.3085 41 1 4.0072 -1.1183 -0.4600 42 1 3.8068 -2.3243 -2.6007 43 1 5.1413 -1.1492 -2.6868 44 1 1.7300 -1.8036 -3.7492 45 1 1.6143 -0.2652 -4.6372 46 1 0.3510 -0.1985 -2.4838 47 1 1.6790 0.9881 -2.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785397348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:10 Heat of formation + Delta-G solvation = -164.076867 kcal Electronic energy + Delta-G solvation = -26382.250525 eV Core-core repulsion = 22690.515276 eV Total energy + Delta-G solvation = -3691.735249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.98542 -38.66593 -37.95188 -37.02390 -36.50369 -34.22275 -33.79558 -32.18090 -30.94680 -29.66782 -28.30085 -26.29330 -25.47027 -24.29810 -22.68391 -22.05401 -20.32297 -20.06868 -18.66215 -18.62371 -17.58655 -17.24496 -16.92679 -16.91440 -16.50435 -16.18256 -15.81316 -15.59547 -15.32088 -14.88542 -14.54172 -14.46197 -14.28406 -14.09149 -13.84667 -13.49438 -13.42886 -13.19463 -13.03853 -13.01228 -12.85267 -12.73120 -12.71064 -12.54751 -12.33755 -12.26081 -12.05560 -11.79949 -11.74678 -11.52625 -11.45746 -11.36314 -11.13023 -11.00836 -10.57535 -10.49823 -10.27306 -8.23225 -6.34143 -0.72015 1.39628 1.41966 1.49919 1.77236 2.39189 2.73500 3.04818 3.10282 3.25518 3.49960 3.70875 3.73992 3.82366 3.91812 4.04684 4.13841 4.25009 4.28703 4.35272 4.37451 4.46909 4.63017 4.64134 4.72491 4.73342 4.84782 4.87259 4.89282 4.96818 5.01496 5.03311 5.04774 5.15763 5.20142 5.29052 5.33409 5.44336 5.47480 5.59727 5.62554 5.78771 6.15307 6.19341 6.34584 6.81104 7.35099 8.87970 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027509 B = 0.002835 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.594018 B = 9873.418803 C =10470.515191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.181 3.819 3 C -0.187 4.187 4 N -1.099 6.099 5 S 2.625 3.375 6 O -0.998 6.998 7 O -0.981 6.981 8 C -0.614 4.614 9 C -0.105 4.105 10 C 0.034 3.966 11 C -0.554 4.554 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.077 4.077 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.407 6.407 23 C 0.057 3.943 24 C -0.152 4.152 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.425 0.575 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.130 -9.408 -20.886 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.093 3.907 3 C -0.245 4.245 4 N -0.860 5.860 5 S 2.721 3.279 6 O -0.989 6.989 7 O -0.971 6.971 8 C -0.744 4.744 9 C -0.144 4.144 10 C -0.005 4.005 11 C -0.592 4.592 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.786 3.214 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.097 4.097 20 C -0.196 4.196 21 C -0.017 4.017 22 O -0.326 6.326 23 C -0.020 4.020 24 C -0.190 4.190 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.262 0.738 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.824 -8.960 -20.520 24.870 hybrid contribution -1.005 0.024 1.146 1.524 sum 9.819 -8.936 -19.374 23.487 Atomic orbital electron populations 1.22803 0.93647 1.04547 1.04140 1.20277 0.93990 0.91790 0.84602 1.22762 1.03231 0.94993 1.03491 1.55424 1.82317 1.25126 1.23168 1.04315 0.77273 0.73643 0.72681 1.93519 1.81668 1.60103 1.63586 1.93585 1.65471 1.54322 1.83677 1.30793 1.24429 1.12826 1.06362 1.21305 1.00834 1.00104 0.92157 1.18931 0.90913 0.95292 0.95314 1.21715 0.95235 1.41160 1.01134 0.92293 1.25911 0.95360 0.96114 1.02032 1.70059 1.00282 1.47797 1.38708 0.85558 0.77346 0.79075 0.79463 1.19263 1.20552 1.19284 1.21356 0.94974 1.00562 0.92777 1.22362 0.96025 1.02524 0.98687 1.22655 0.98059 0.96096 0.84845 1.87910 1.20729 1.78275 1.45682 1.22732 0.80113 1.00506 0.98607 1.22388 1.01974 1.01049 0.93620 0.92027 0.89206 0.90031 0.91092 0.89194 0.92672 0.73828 0.83566 0.83405 0.91680 0.91811 0.97807 0.97840 0.92605 0.88867 0.91372 0.90544 0.92116 0.88597 0.92187 0.87908 0.88510 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 7.95 71.98 0.57 -2.28 16 2 C 0.18 2.99 0.63 3.60 0.00 2.99 16 3 C -0.19 -3.81 6.35 71.98 0.46 -3.35 16 4 N -1.10 -20.95 4.94 -152.21 -0.75 -21.70 16 5 S 2.63 74.21 4.99 -56.49 -0.28 73.93 16 6 O -1.00 -34.80 18.08 -127.65 -2.31 -37.11 16 7 O -0.98 -32.35 14.49 -127.65 -1.85 -34.20 16 8 C -0.61 -18.28 4.22 71.98 0.30 -17.97 16 9 C -0.10 -4.25 5.16 30.59 0.16 -4.10 16 10 C 0.03 1.73 4.97 29.85 0.15 1.87 16 11 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.00 0.24 5.46 84.65 0.46 0.70 16 14 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 15 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C -0.08 -0.97 1.69 -10.67 -0.02 -0.99 16 20 C -0.16 -2.33 4.88 30.69 0.15 -2.18 16 21 C 0.06 0.81 6.84 72.02 0.49 1.30 16 22 O -0.41 -6.83 10.77 -148.98 -1.60 -8.43 16 23 C 0.06 0.65 6.84 72.01 0.49 1.14 16 24 C -0.15 -1.67 4.65 30.69 0.14 -1.53 16 25 H 0.06 1.10 4.15 -2.39 -0.01 1.09 16 26 H 0.09 1.06 6.84 -2.39 -0.02 1.05 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.62 5.82 -2.39 -0.01 1.60 16 29 H 0.09 1.46 6.50 -2.39 -0.02 1.45 16 30 H 0.05 1.31 5.21 -2.39 -0.01 1.30 16 31 H 0.42 6.30 8.68 -96.75 -0.84 5.47 16 32 H 0.15 3.89 5.89 -2.39 -0.01 3.88 16 33 H 0.15 3.83 7.85 -2.39 -0.02 3.81 16 34 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 38 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.20 6.18 -2.39 -0.01 1.19 16 41 H 0.08 1.11 7.86 -2.39 -0.02 1.09 16 42 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 0.77 6.72 -2.39 -0.02 0.75 16 47 H 0.07 0.92 6.43 -2.39 -0.02 0.91 16 Total: -1.00 -74.01 361.75 -0.76 -74.77 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.13 Total: 17.39 kcal Atomic # 6 Polarization: -59.26 SS G_CDS: 3.60 Total: -55.67 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -0.47 Total: -76.78 kcal Atomic # 8 Polarization: -73.98 SS G_CDS: -5.76 Total: -79.74 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 74.21 SS G_CDS: -0.28 Total: 73.93 kcal Total: -74.01 -0.76 -74.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785397348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.309 kcal (2) G-P(sol) polarization free energy of solvation -74.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds