Wall clock time and date at job start Tue Mar 31 2020 13:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47387 * 2 1 4 4 C 1.53006 * 109.47337 * 120.00067 * 2 1 3 5 5 C 1.50699 * 109.47169 * 174.37513 * 4 2 1 6 6 C 1.37966 * 120.07366 * 102.46292 * 5 4 2 7 7 C 1.38349 * 120.15252 * 179.97438 * 6 5 4 8 8 C 1.38388 * 120.30065 * 0.02562 * 7 6 5 9 9 C 1.37923 * 120.15052 * 0.02562 * 8 7 6 10 10 C 1.39600 * 120.07993 * 282.19108 * 5 4 2 11 11 C 1.47726 * 120.15045 * 359.97391 * 10 5 4 12 12 O 1.21474 * 119.99682 * 354.16315 * 11 10 5 13 13 O 1.34713 * 120.00192 * 174.16372 * 11 10 5 14 14 C 1.45199 * 116.99915 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47101 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99546 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99828 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99891 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47229 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00075 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47076 * 90.00091 * 23 21 19 25 25 H 1.48500 * 109.47104 * 210.00194 * 23 21 19 26 26 H 1.48494 * 109.47328 * 330.00188 * 23 21 19 27 27 H 1.09002 * 109.47346 * 299.99987 * 1 2 3 28 28 H 1.09001 * 109.47454 * 60.00180 * 1 2 3 29 29 H 1.09006 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47346 * 240.00013 * 2 1 3 31 31 H 1.09003 * 109.47188 * 305.09036 * 3 2 1 32 32 H 1.09007 * 109.47065 * 65.08471 * 3 2 1 33 33 H 1.09002 * 109.47618 * 185.08627 * 3 2 1 34 34 H 1.09001 * 109.46853 * 294.37993 * 4 2 1 35 35 H 1.09006 * 109.46686 * 54.37880 * 4 2 1 36 36 H 1.07998 * 119.92463 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.84628 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.92805 * 179.97438 * 8 7 6 39 39 H 1.07999 * 120.07704 * 179.97438 * 9 8 7 40 40 H 1.09007 * 109.46920 * 299.99791 * 14 13 11 41 41 H 1.09002 * 109.47580 * 59.99956 * 14 13 11 42 42 H 0.96998 * 120.00372 * 0.02562 * 17 15 14 43 43 H 1.09007 * 109.47080 * 300.00188 * 18 17 15 44 44 H 1.08994 * 109.46695 * 60.00242 * 18 17 15 45 45 H 0.96997 * 120.00690 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5405 -0.8430 1.1816 6 6 4.3371 0.0035 1.9249 7 6 5.7148 -0.1072 1.8644 8 6 6.3035 -1.0660 1.0586 9 6 5.5192 -1.9180 0.3095 10 6 4.1277 -1.8162 0.3710 11 6 3.2811 -2.7304 -0.4226 12 8 2.0737 -2.7078 -0.2911 13 8 3.8480 -3.5890 -1.2921 14 6 2.9549 -4.4571 -2.0384 15 6 3.7624 -5.3415 -2.9533 16 8 4.9714 -5.2489 -2.9746 17 7 3.1408 -6.2353 -3.7478 18 6 3.9257 -7.0947 -4.6377 19 6 2.9988 -7.9957 -5.4122 20 1 1.9317 -7.9347 -5.2568 21 6 3.5129 -8.8987 -6.3183 22 7 4.8123 -8.9734 -6.5072 23 14 2.3640 -10.0162 -7.2778 24 1 1.9678 -9.3490 -8.5441 25 1 3.0581 -11.2921 -7.5867 26 1 1.1527 -10.2957 -6.4656 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6041 1.9820 -0.8409 32 1 1.7529 1.9293 0.9321 33 1 3.1262 1.4438 -0.0911 34 1 1.7611 -0.1526 2.1364 35 1 1.5967 -1.7158 1.3010 36 1 3.8841 0.7542 2.5554 37 1 6.3335 0.5577 2.4486 38 1 7.3796 -1.1468 1.0156 39 1 5.9799 -2.6655 -0.3192 40 1 2.3859 -5.0760 -1.3445 41 1 2.2694 -3.8507 -2.6305 42 1 2.1738 -6.3091 -3.7311 43 1 4.4944 -6.4759 -5.3319 44 1 4.6114 -7.7007 -4.0456 45 1 5.1741 -9.6084 -7.1449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791742127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:05 Heat of formation + Delta-G solvation = -113.780403 kcal Electronic energy + Delta-G solvation = -26138.068012 eV Core-core repulsion = 22313.069831 eV Total energy + Delta-G solvation = -3824.998182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95741 -39.39188 -38.50163 -36.75924 -35.88011 -34.25789 -32.42698 -31.82476 -31.65197 -29.17006 -27.31939 -27.03015 -26.48896 -24.22279 -22.67731 -22.04910 -21.11079 -20.06984 -19.90322 -18.15624 -17.45224 -16.77264 -16.58235 -16.04781 -15.69943 -15.51543 -15.12163 -14.79435 -14.77474 -14.55906 -14.27972 -14.03738 -13.80550 -13.10921 -13.05844 -12.84662 -12.62575 -12.52461 -12.39744 -12.08264 -12.00847 -11.94618 -11.77949 -11.54849 -11.10726 -11.02290 -10.94857 -10.93835 -10.83690 -10.56420 -10.35490 -10.12150 -9.45189 -9.28937 -9.18877 -8.98978 -8.79276 -8.00029 -6.20591 -4.28052 0.49355 1.08996 2.39693 2.42890 3.16793 3.22482 3.28762 3.31103 3.52306 3.96201 4.31869 4.41560 4.50821 4.67198 4.72970 4.80333 4.85256 4.99472 5.08593 5.10966 5.15579 5.21533 5.23597 5.33480 5.41833 5.46218 5.55990 5.57864 5.66488 5.72464 5.78683 5.84225 6.00695 6.05718 6.10356 6.13547 6.18274 6.31067 6.47099 6.61362 7.21478 7.29634 7.44664 7.58397 7.69743 7.90927 8.48809 8.70028 8.95216 9.38403 10.89570 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.002403 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.536436 B =11647.784398 C =12739.498627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.089 4.089 5 C -0.011 4.011 6 C -0.135 4.135 7 C -0.082 4.082 8 C -0.141 4.141 9 C -0.055 4.055 10 C -0.126 4.126 11 C 0.506 3.494 12 O -0.499 6.499 13 O -0.325 6.325 14 C 0.051 3.949 15 C 0.500 3.500 16 O -0.534 6.534 17 N -0.706 5.706 18 C 0.251 3.749 19 C -0.545 4.545 20 H 0.064 0.936 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.393 0.607 43 H 0.029 0.971 44 H 0.030 0.970 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 20.241 17.763 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 C -0.207 4.207 4 C -0.125 4.125 5 C -0.012 4.012 6 C -0.153 4.153 7 C -0.100 4.100 8 C -0.159 4.159 9 C -0.073 4.073 10 C -0.128 4.128 11 C 0.351 3.649 12 O -0.389 6.389 13 O -0.240 6.240 14 C -0.027 4.027 15 C 0.282 3.718 16 O -0.412 6.412 17 N -0.357 5.357 18 C 0.131 3.869 19 C -0.583 4.583 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.226 0.774 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.476 20.156 17.625 26.999 hybrid contribution -1.040 -0.745 -0.631 1.426 sum -4.516 19.411 16.993 26.191 Atomic orbital electron populations 1.21772 0.94903 1.02106 1.01153 1.20958 0.95856 0.95239 0.97983 1.21933 1.01070 0.96274 1.01447 1.21022 0.89861 1.03524 0.98142 1.20010 0.96705 0.91899 0.92545 1.21001 0.93473 0.99988 1.00859 1.21429 0.94893 0.96924 0.96797 1.21178 1.00461 0.96383 0.97828 1.21646 0.92184 0.97430 0.96026 1.18951 0.93258 0.98702 1.01846 1.21246 0.86860 0.78895 0.77898 1.90780 1.15274 1.68238 1.64615 1.86605 1.40204 1.46871 1.50363 1.22863 0.92017 0.92777 0.95033 1.19888 0.88541 0.81652 0.81671 1.90704 1.13911 1.68943 1.67629 1.46361 1.10948 1.37339 1.41005 1.19175 0.91514 0.88345 0.87853 1.21205 0.93342 1.20300 1.23492 0.91768 1.24951 0.95304 0.97077 0.96657 1.69969 1.11153 1.36186 1.34899 0.86391 0.80446 0.79840 0.80098 1.20418 1.20970 1.19713 0.93088 0.92949 0.92135 0.91078 0.92870 0.92862 0.92780 0.91531 0.87850 0.85287 0.85487 0.85113 0.83871 0.88468 0.88475 0.77423 0.95266 0.95251 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.19 37.15 0.34 -0.93 16 2 C -0.08 -0.81 2.33 -90.62 -0.21 -1.02 16 3 C -0.15 -1.25 8.84 37.16 0.33 -0.93 16 4 C -0.09 -0.86 4.10 -27.88 -0.11 -0.98 16 5 C -0.01 -0.12 4.42 -104.21 -0.46 -0.58 16 6 C -0.14 -1.11 9.12 -39.64 -0.36 -1.47 16 7 C -0.08 -0.63 10.04 -39.49 -0.40 -1.02 16 8 C -0.14 -1.24 10.03 -39.64 -0.40 -1.63 16 9 C -0.05 -0.61 9.62 -39.17 -0.38 -0.99 16 10 C -0.13 -1.54 5.83 -104.98 -0.61 -2.15 16 11 C 0.51 7.11 7.38 34.61 0.26 7.36 16 12 O -0.50 -7.11 11.72 -19.25 -0.23 -7.34 16 13 O -0.33 -5.19 9.02 -47.21 -0.43 -5.61 16 14 C 0.05 0.77 5.95 36.01 0.21 0.98 16 15 C 0.50 9.95 7.91 -10.98 -0.09 9.86 16 16 O -0.53 -12.95 16.50 -14.10 -0.23 -13.18 16 17 N -0.71 -14.51 5.55 -61.47 -0.34 -14.86 16 18 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 19 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 20 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 22 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 23 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.86 6.54 -51.93 -0.34 0.52 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.48 7.21 -51.93 -0.37 0.10 16 34 H 0.07 0.53 7.98 -51.93 -0.41 0.12 16 35 H 0.10 1.18 5.92 -51.93 -0.31 0.88 16 36 H 0.13 0.78 8.02 -52.49 -0.42 0.36 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 1.70 7.62 -52.49 -0.40 1.30 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -32.37 378.77 -8.90 -41.28 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.78 Total: 3.64 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.32 Total: -0.19 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.40 Total: -39.92 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.88 Total: -26.13 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.37 -8.90 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791742127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.503 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds