Wall clock time and date at job start Tue Mar 31 2020 13:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47387 * 2 1 4 4 C 1.53006 * 109.47337 * 120.00067 * 2 1 3 5 5 C 1.50699 * 109.47169 * 174.37513 * 4 2 1 6 6 C 1.37966 * 120.07366 * 102.46292 * 5 4 2 7 7 C 1.38349 * 120.15252 * 179.97438 * 6 5 4 8 8 C 1.38388 * 120.30065 * 0.02562 * 7 6 5 9 9 C 1.37923 * 120.15052 * 0.02562 * 8 7 6 10 10 C 1.39600 * 120.07993 * 282.19108 * 5 4 2 11 11 C 1.47726 * 120.15045 * 359.97391 * 10 5 4 12 12 O 1.21474 * 119.99682 * 354.16315 * 11 10 5 13 13 O 1.34713 * 120.00192 * 174.16372 * 11 10 5 14 14 C 1.45199 * 116.99915 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47101 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99546 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99828 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99891 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47229 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00075 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47076 * 90.00091 * 23 21 19 25 25 H 1.48500 * 109.47104 * 210.00194 * 23 21 19 26 26 H 1.48494 * 109.47328 * 330.00188 * 23 21 19 27 27 H 1.09002 * 109.47346 * 299.99987 * 1 2 3 28 28 H 1.09001 * 109.47454 * 60.00180 * 1 2 3 29 29 H 1.09006 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47346 * 240.00013 * 2 1 3 31 31 H 1.09003 * 109.47188 * 305.09036 * 3 2 1 32 32 H 1.09007 * 109.47065 * 65.08471 * 3 2 1 33 33 H 1.09002 * 109.47618 * 185.08627 * 3 2 1 34 34 H 1.09001 * 109.46853 * 294.37993 * 4 2 1 35 35 H 1.09006 * 109.46686 * 54.37880 * 4 2 1 36 36 H 1.07998 * 119.92463 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.84628 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.92805 * 179.97438 * 8 7 6 39 39 H 1.07999 * 120.07704 * 179.97438 * 9 8 7 40 40 H 1.09007 * 109.46920 * 299.99791 * 14 13 11 41 41 H 1.09002 * 109.47580 * 59.99956 * 14 13 11 42 42 H 0.96998 * 120.00372 * 0.02562 * 17 15 14 43 43 H 1.09007 * 109.47080 * 300.00188 * 18 17 15 44 44 H 1.08994 * 109.46695 * 60.00242 * 18 17 15 45 45 H 0.96997 * 120.00690 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5405 -0.8430 1.1816 6 6 4.3371 0.0035 1.9249 7 6 5.7148 -0.1072 1.8644 8 6 6.3035 -1.0660 1.0586 9 6 5.5192 -1.9180 0.3095 10 6 4.1277 -1.8162 0.3710 11 6 3.2811 -2.7304 -0.4226 12 8 2.0737 -2.7078 -0.2911 13 8 3.8480 -3.5890 -1.2921 14 6 2.9549 -4.4571 -2.0384 15 6 3.7624 -5.3415 -2.9533 16 8 4.9714 -5.2489 -2.9746 17 7 3.1408 -6.2353 -3.7478 18 6 3.9257 -7.0947 -4.6377 19 6 2.9988 -7.9957 -5.4122 20 1 1.9317 -7.9347 -5.2568 21 6 3.5129 -8.8987 -6.3183 22 7 4.8123 -8.9734 -6.5072 23 14 2.3640 -10.0162 -7.2778 24 1 1.9678 -9.3490 -8.5441 25 1 3.0581 -11.2921 -7.5867 26 1 1.1527 -10.2957 -6.4656 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6041 1.9820 -0.8409 32 1 1.7529 1.9293 0.9321 33 1 3.1262 1.4438 -0.0911 34 1 1.7611 -0.1526 2.1364 35 1 1.5967 -1.7158 1.3010 36 1 3.8841 0.7542 2.5554 37 1 6.3335 0.5577 2.4486 38 1 7.3796 -1.1468 1.0156 39 1 5.9799 -2.6655 -0.3192 40 1 2.3859 -5.0760 -1.3445 41 1 2.2694 -3.8507 -2.6305 42 1 2.1738 -6.3091 -3.7311 43 1 4.4944 -6.4759 -5.3319 44 1 4.6114 -7.7007 -4.0456 45 1 5.1741 -9.6084 -7.1449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791742127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:04 Heat of formation + Delta-G solvation = -132.266930 kcal Electronic energy + Delta-G solvation = -26138.869648 eV Core-core repulsion = 22313.069831 eV Total energy + Delta-G solvation = -3825.799818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.98377 -40.67381 -39.78932 -37.74665 -36.79801 -36.19814 -34.43626 -32.61436 -32.39817 -30.73032 -28.60305 -27.97036 -27.49806 -25.24020 -24.46737 -22.92332 -22.03087 -21.67136 -20.80050 -19.36200 -18.92410 -18.08434 -17.80542 -17.39964 -17.00000 -16.72069 -16.38418 -16.20230 -16.06471 -15.53632 -15.20044 -15.16810 -14.60806 -14.53299 -14.46468 -14.08497 -13.77887 -13.72931 -13.47898 -13.37706 -13.05646 -12.95433 -12.79584 -12.72942 -12.71453 -12.25239 -12.24054 -11.96715 -11.82538 -11.68251 -11.51543 -11.43873 -11.09177 -10.89875 -10.83153 -10.03434 -9.95371 -9.71816 -8.30872 -6.47618 -0.32666 0.37200 1.22228 1.43724 1.45166 1.46004 1.53398 1.56905 2.32808 2.55530 2.76162 3.04369 3.55985 3.69411 3.71518 3.86460 4.01048 4.02798 4.04131 4.14485 4.17831 4.32658 4.41288 4.45725 4.74298 4.79803 4.82954 4.85422 4.94633 5.02011 5.05058 5.06276 5.11873 5.19936 5.21773 5.30839 5.37950 5.39771 5.42808 5.48221 5.51696 5.61354 5.65772 5.80463 5.92238 6.57546 6.61638 6.76368 7.18598 7.33423 8.81346 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.002403 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.536436 B =11647.784398 C =12739.498627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.085 4.085 5 C -0.018 4.018 6 C -0.130 4.130 7 C -0.071 4.071 8 C -0.142 4.142 9 C -0.075 4.075 10 C -0.152 4.152 11 C 0.503 3.497 12 O -0.505 6.505 13 O -0.347 6.347 14 C 0.063 3.937 15 C 0.500 3.500 16 O -0.583 6.583 17 N -0.698 5.698 18 C 0.267 3.733 19 C -0.557 4.557 20 H 0.086 0.914 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.985 3.015 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.255 1.255 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.150 0.850 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.412 0.588 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 22.030 19.466 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.202 4.202 4 C -0.122 4.122 5 C -0.018 4.018 6 C -0.148 4.148 7 C -0.088 4.088 8 C -0.159 4.159 9 C -0.093 4.093 10 C -0.153 4.153 11 C 0.350 3.650 12 O -0.395 6.395 13 O -0.263 6.263 14 C -0.014 4.014 15 C 0.285 3.715 16 O -0.464 6.464 17 N -0.349 5.349 18 C 0.144 3.856 19 C -0.595 4.595 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.808 3.192 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.179 1.179 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.177 0.823 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.249 0.751 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.358 21.967 19.354 29.763 hybrid contribution -0.396 -1.207 -1.081 1.668 sum -5.754 20.760 18.273 28.249 Atomic orbital electron populations 1.21745 0.94339 1.01459 1.02095 1.20930 0.96329 0.96003 0.96822 1.21883 1.00632 0.95154 1.02512 1.20975 0.89508 1.02710 0.98987 1.20181 0.97227 0.91853 0.92552 1.21373 0.93697 0.99617 1.00094 1.21855 0.95119 0.96193 0.95664 1.21456 1.01344 0.95921 0.97223 1.21618 0.92284 0.98274 0.97113 1.19041 0.93450 0.99703 1.03111 1.21671 0.87198 0.78637 0.77530 1.90771 1.15464 1.68451 1.64860 1.86603 1.41079 1.47549 1.51117 1.22718 0.90904 0.92786 0.94988 1.20674 0.88241 0.81241 0.81306 1.90679 1.16415 1.70244 1.69028 1.46035 1.11606 1.36889 1.40415 1.18632 0.91481 0.88028 0.87417 1.21604 0.94328 1.20153 1.23374 0.89601 1.26057 0.96947 0.98789 0.97752 1.70130 1.13582 1.37276 1.35891 0.85148 0.78335 0.77152 0.78536 1.19604 1.20972 1.17913 0.91365 0.92761 0.93568 0.94079 0.92826 0.90931 0.93301 0.89117 0.89975 0.82286 0.81873 0.83203 0.85839 0.85833 0.85943 0.75117 0.99001 0.98958 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 2 C -0.08 -1.54 2.33 -10.80 -0.03 -1.56 16 3 C -0.14 -2.11 8.84 71.98 0.64 -1.48 16 4 C -0.09 -1.54 4.10 29.85 0.12 -1.42 16 5 C -0.02 -0.34 4.42 -19.60 -0.09 -0.43 16 6 C -0.13 -1.72 9.12 22.23 0.20 -1.51 16 7 C -0.07 -0.84 10.04 22.33 0.22 -0.61 16 8 C -0.14 -2.28 10.03 22.23 0.22 -2.06 16 9 C -0.07 -1.72 9.62 22.54 0.22 -1.50 16 10 C -0.15 -3.75 5.83 -20.10 -0.12 -3.87 16 11 C 0.50 14.58 7.38 70.33 0.52 15.10 16 12 O -0.51 -14.59 11.72 19.92 0.23 -14.35 16 13 O -0.35 -11.51 9.02 -49.84 -0.45 -11.96 16 14 C 0.06 1.90 5.95 71.24 0.42 2.33 16 15 C 0.50 20.57 7.91 87.66 0.69 21.26 16 16 O -0.58 -29.92 16.50 15.77 0.26 -29.66 16 17 N -0.70 -29.32 5.55 -466.78 -2.59 -31.91 16 18 C 0.27 14.55 5.43 85.63 0.46 15.02 16 19 C -0.56 -29.99 9.28 25.60 0.24 -29.75 16 20 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 21 C 0.00 0.24 5.46 84.65 0.46 0.70 16 22 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 23 Si 0.99 42.07 29.54 68.60 2.03 44.10 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.04 1.01 6.54 -2.39 -0.02 0.99 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 0.76 7.21 -2.39 -0.02 0.74 16 34 H 0.09 1.17 7.98 -2.39 -0.02 1.15 16 35 H 0.08 1.86 5.92 -2.38 -0.01 1.84 16 36 H 0.16 1.15 8.02 -2.91 -0.02 1.12 16 37 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.12 3.23 7.62 -2.91 -0.02 3.21 16 40 H 0.12 3.12 8.14 -2.38 -0.02 3.10 16 41 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.41 13.97 8.32 -92.71 -0.77 13.20 16 43 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -74.40 378.77 4.85 -69.55 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.22 Total: 21.28 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 4.86 Total: 8.54 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.30 Total: -87.50 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: 0.04 Total: -55.97 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -74.40 4.85 -69.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791742127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.715 kcal (2) G-P(sol) polarization free energy of solvation -74.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds