Wall clock time and date at job start Tue Mar 31 2020 12:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.63001 * 2 1 4 4 N 1.46494 * 109.47302 * 180.30672 * 3 2 1 5 5 C 1.34781 * 120.00340 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99207 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.00291 * 180.02562 * 5 4 3 8 8 C 1.53004 * 109.47253 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.47018 * 305.00315 * 8 7 5 10 10 C 1.50701 * 109.47038 * 65.00065 * 8 7 5 11 11 H 1.08008 * 120.00049 * 29.58184 * 10 8 7 12 12 C 1.37872 * 120.00183 * 209.58672 * 10 8 7 13 13 N 1.31518 * 120.00019 * 4.93940 * 12 10 8 14 14 Si 1.86798 * 120.00417 * 184.94184 * 12 10 8 15 15 H 1.48501 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47392 * 119.99879 * 14 12 10 17 17 H 1.48501 * 109.47448 * 239.99818 * 14 12 10 18 18 C 1.50692 * 109.47303 * 184.99751 * 8 7 5 19 19 C 1.38239 * 120.00493 * 296.76846 * 18 8 7 20 20 C 1.38229 * 120.00259 * 179.78665 * 19 18 8 21 21 C 1.38241 * 119.99916 * 0.44255 * 20 19 18 22 22 C 1.38239 * 119.99880 * 359.81323 * 21 20 19 23 23 C 1.38226 * 119.99914 * 359.97438 * 22 21 20 24 24 O 1.43755 * 109.51027 * 120.31588 * 2 1 3 25 25 C 1.44785 * 104.81237 * 95.49313 * 24 2 1 26 26 C 1.54914 * 101.72365 * 36.10822 * 25 24 2 27 27 O 1.43371 * 109.63437 * 239.60745 * 2 1 3 28 28 H 1.09000 * 109.47043 * 60.00207 * 1 2 3 29 29 H 1.09003 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47182 * 299.99577 * 1 2 3 31 31 H 1.09000 * 109.47015 * 300.30563 * 3 2 1 32 32 H 1.09000 * 109.47038 * 60.30562 * 3 2 1 33 33 H 0.97005 * 120.00225 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.47453 * 299.99685 * 7 5 4 35 35 H 1.09000 * 109.47222 * 60.00025 * 7 5 4 36 36 H 0.97001 * 119.99929 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.99681 * 0.02562 * 19 18 8 38 38 H 1.07997 * 120.00549 * 180.27592 * 20 19 18 39 39 H 1.08003 * 120.00184 * 179.83248 * 21 20 19 40 40 H 1.08002 * 119.99631 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99928 * 179.97438 * 23 22 21 42 42 H 1.08993 * 110.98238 * 277.99230 * 25 24 2 43 43 H 1.09006 * 111.00778 * 154.22809 * 25 24 2 44 44 H 1.09007 * 110.69707 * 206.04210 * 26 25 24 45 45 H 1.08997 * 110.69965 * 82.83140 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 3.5089 1.4371 -0.0074 5 6 4.1860 2.6025 -0.0092 6 8 3.5824 3.6544 -0.0043 7 6 5.6929 2.5983 -0.0174 8 6 6.2069 4.0394 -0.0173 9 1 5.7692 4.5814 -0.8556 10 6 5.8171 4.7117 1.2739 11 1 5.7084 4.1272 2.1757 12 6 5.5991 6.0727 1.3041 13 7 5.6358 6.7695 0.1893 14 14 5.2517 6.9272 2.9285 15 1 5.2643 5.9274 4.0264 16 1 6.2949 7.9536 3.1810 17 1 3.9192 7.5800 2.8694 18 6 7.7081 4.0374 -0.1492 19 6 8.4880 3.4641 0.8377 20 6 9.8648 3.4583 0.7146 21 6 10.4622 4.0340 -0.3912 22 6 9.6825 4.6119 -1.3756 23 6 8.3056 4.6138 -1.2545 24 8 2.0101 -0.6840 1.1697 25 6 2.2600 -2.0403 0.7290 26 6 2.7856 -1.8117 -0.7102 27 8 2.0117 -0.6832 -1.1648 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6776 1.9575 -0.8872 32 1 1.6865 1.9543 0.8927 33 1 3.9916 0.5957 -0.0110 34 1 6.0597 2.0822 0.8698 35 1 6.0500 2.0849 -0.9102 36 1 5.4821 7.7270 0.2105 37 1 8.0214 3.0173 1.7032 38 1 10.4739 3.0065 1.4834 39 1 11.5380 4.0319 -0.4862 40 1 10.1494 5.0620 -2.2393 41 1 7.6965 5.0657 -2.0234 42 1 1.3394 -2.6237 0.7202 43 1 3.0173 -2.5195 1.3495 44 1 2.5949 -2.6856 -1.3333 45 1 3.8484 -1.5703 -0.6984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793711191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:50 Heat of formation + Delta-G solvation = -103.045308 kcal Electronic energy + Delta-G solvation = -27154.742438 eV Core-core repulsion = 23330.209765 eV Total energy + Delta-G solvation = -3824.532673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.89125 -38.87318 -38.07150 -35.22607 -34.53323 -33.75527 -32.05977 -31.34322 -29.97933 -28.93218 -28.73893 -26.57529 -24.93525 -23.51836 -22.64352 -21.59591 -21.31936 -20.09394 -19.17708 -17.62868 -16.99405 -16.54763 -16.21505 -15.89273 -15.55918 -15.35640 -14.50372 -14.49412 -14.26726 -14.07117 -13.82374 -13.57231 -13.43343 -13.08188 -12.74732 -12.72543 -12.46581 -12.43397 -12.34875 -12.18409 -11.89442 -11.58336 -11.57552 -11.50042 -10.85155 -10.64514 -10.50078 -10.44037 -10.22945 -10.02466 -9.88661 -9.38235 -9.05692 -8.76267 -8.47732 -8.26929 -8.01696 -7.58417 -5.87431 -3.86279 2.31789 2.37405 3.13040 3.40550 3.47557 3.50199 3.64709 3.66131 3.72073 4.27333 4.50711 4.56436 4.63790 4.77997 4.86022 4.90769 5.08650 5.30032 5.39477 5.44929 5.50171 5.59980 5.68353 5.68625 5.74138 5.76140 5.83933 5.87344 6.05460 6.15646 6.25962 6.33404 6.44317 6.57735 6.84379 6.86843 6.94815 6.97088 7.07811 7.33839 7.49142 7.57754 7.94222 7.98355 8.09905 8.18108 8.44506 9.12880 9.17875 9.74483 11.22808 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003849 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.254722 B = 7272.520954 C = 8675.808658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.244 3.756 3 C 0.124 3.876 4 N -0.741 5.741 5 C 0.512 3.488 6 O -0.495 6.495 7 C -0.120 4.120 8 C 0.078 3.922 9 H 0.073 0.927 10 C -0.488 4.488 11 H 0.051 0.949 12 C 0.076 3.924 13 N -0.881 5.881 14 Si 0.885 3.115 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.285 1.285 18 C -0.022 4.022 19 C -0.114 4.114 20 C -0.133 4.133 21 C -0.156 4.156 22 C -0.129 4.129 23 C -0.119 4.119 24 O -0.364 6.364 25 C 0.013 3.987 26 C 0.017 3.983 27 O -0.372 6.372 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.390 0.610 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.258 0.742 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -18.363 -2.122 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.167 3.833 3 C -0.001 4.001 4 N -0.397 5.397 5 C 0.299 3.701 6 O -0.366 6.366 7 C -0.161 4.161 8 C 0.059 3.941 9 H 0.091 0.909 10 C -0.526 4.526 11 H 0.069 0.931 12 C -0.127 4.127 13 N -0.518 5.518 14 Si 0.713 3.287 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.212 1.212 18 C -0.022 4.022 19 C -0.133 4.133 20 C -0.151 4.151 21 C -0.174 4.174 22 C -0.147 4.147 23 C -0.137 4.137 24 O -0.284 6.284 25 C -0.063 4.063 26 C -0.059 4.059 27 O -0.293 6.293 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.223 0.777 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.118 0.882 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.156 -17.178 -2.184 17.808 hybrid contribution 0.089 0.025 1.018 1.022 sum -4.068 -17.153 -1.166 17.667 Atomic orbital electron populations 1.22305 0.92965 1.03355 1.04011 1.23731 0.93432 0.91091 0.75002 1.21511 0.82667 0.92600 1.03329 1.45963 1.05467 1.09177 1.79088 1.20894 0.90775 0.82734 0.75731 1.90768 1.69980 1.30374 1.45489 1.21752 0.90715 1.02350 1.01243 1.17841 0.86105 0.89235 1.00906 0.90902 1.20715 1.45972 0.92432 0.93479 0.93114 1.24814 0.94454 0.97746 0.95689 1.69919 1.49290 1.06938 1.25685 0.86657 0.77683 0.79688 0.84644 1.19928 1.21256 1.21150 1.20765 0.98733 0.91597 0.91134 1.20958 0.92749 1.00690 0.98859 1.20975 0.95140 1.01241 0.97721 1.20796 0.98422 1.02298 0.95878 1.20983 0.94337 1.00631 0.98729 1.21104 0.93908 1.00106 0.98607 1.89357 1.86087 1.21421 1.31580 1.24395 1.01479 0.85356 0.95087 1.24241 0.96859 0.89851 0.94949 1.88960 1.69545 1.41676 1.29168 0.90278 0.91604 0.90145 0.90041 0.90177 0.77667 0.90606 0.91738 0.93263 0.86858 0.87684 0.87830 0.87653 0.86792 0.90738 0.87226 0.88217 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.19 37.15 0.34 -1.28 16 2 C 0.24 2.90 1.02 -26.73 -0.03 2.87 16 3 C 0.12 1.86 5.09 -4.04 -0.02 1.84 16 4 N -0.74 -12.13 5.34 -60.30 -0.32 -12.45 16 5 C 0.51 10.69 7.58 -10.99 -0.08 10.61 16 6 O -0.50 -12.79 14.98 5.55 0.08 -12.71 16 7 C -0.12 -2.41 4.95 -27.89 -0.14 -2.54 16 8 C 0.08 1.91 1.68 -92.92 -0.16 1.75 16 9 H 0.07 2.04 6.95 -51.93 -0.36 1.68 16 10 C -0.49 -13.39 6.38 -34.44 -0.22 -13.61 16 11 H 0.05 1.40 7.82 -52.48 -0.41 0.99 16 12 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 13 N -0.88 -26.35 12.85 55.43 0.71 -25.64 16 14 Si 0.88 22.57 29.54 -169.99 -5.02 17.55 16 15 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 19 C -0.11 -2.34 8.86 -39.58 -0.35 -2.69 16 20 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 21 C -0.16 -2.74 10.05 -39.58 -0.40 -3.14 16 22 C -0.13 -2.41 10.05 -39.59 -0.40 -2.81 16 23 C -0.12 -2.56 9.67 -39.58 -0.38 -2.94 16 24 O -0.36 -4.28 10.76 -59.04 -0.64 -4.91 16 25 C 0.01 0.10 7.91 38.17 0.30 0.40 16 26 C 0.02 0.14 7.68 38.17 0.29 0.43 16 27 O -0.37 -4.31 10.61 -59.04 -0.63 -4.94 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.39 5.41 7.43 -40.82 -0.30 5.10 16 34 H 0.08 1.40 7.76 -51.93 -0.40 1.00 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.11 2.24 7.75 -52.48 -0.41 1.83 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.11 2.48 7.95 -52.49 -0.42 2.06 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.59 7.76 -51.93 -0.40 0.18 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -34.17 374.95 -9.30 -43.48 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.91 Total: 6.78 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.23 Total: -12.81 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.39 Total: -38.09 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -1.18 Total: -22.56 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.17 -9.30 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793711191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.568 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds