Wall clock time and date at job start Tue Mar 31 2020 12:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38136 * 120.03702 * 2 1 4 4 C 1.38262 * 120.07009 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.14401 * 359.95827 * 4 3 2 6 6 C 1.38089 * 120.06808 * 359.97438 * 5 4 3 7 7 C 1.38857 * 120.03531 * 180.23388 * 2 1 3 8 8 N 1.39926 * 120.07134 * 359.97438 * 7 2 1 9 9 C 1.34779 * 119.99825 * 205.07067 * 8 7 2 10 10 O 1.21283 * 120.00197 * 5.52293 * 9 8 7 11 11 C 1.50697 * 119.99592 * 185.52083 * 9 8 7 12 12 O 1.45203 * 109.47118 * 179.97438 * 11 9 8 13 13 C 1.34230 * 116.99976 * 180.02562 * 12 11 9 14 14 O 1.20821 * 120.00429 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.99694 * 180.02562 * 13 12 11 16 16 C 1.52992 * 109.47005 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47117 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46944 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.46780 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00288 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99829 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00113 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99943 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47436 * 90.00020 * 23 21 19 25 25 H 1.48504 * 109.47328 * 209.99920 * 23 21 19 26 26 H 1.48501 * 109.47243 * 330.00172 * 23 21 19 27 27 H 1.08993 * 109.47033 * 90.00013 * 1 2 3 28 28 H 1.09003 * 109.47126 * 209.99492 * 1 2 3 29 29 H 1.08994 * 109.47014 * 329.99607 * 1 2 3 30 30 H 1.07999 * 119.95988 * 0.02562 * 3 2 1 31 31 H 1.07996 * 119.92574 * 179.97438 * 4 3 2 32 32 H 1.07994 * 119.96630 * 180.02562 * 5 4 3 33 33 H 1.08005 * 120.03662 * 179.97438 * 6 5 4 34 34 H 0.97001 * 120.00189 * 25.07000 * 8 7 2 35 35 H 1.08997 * 109.47544 * 300.00419 * 11 9 8 36 36 H 1.08999 * 109.47178 * 60.00197 * 11 9 8 37 37 H 1.08998 * 109.47080 * 300.00184 * 15 13 12 38 38 H 1.09000 * 109.46735 * 60.00328 * 15 13 12 39 39 H 1.08998 * 109.47348 * 300.00015 * 16 15 13 40 40 H 1.08997 * 109.47625 * 60.00015 * 16 15 13 41 41 H 1.08992 * 109.46950 * 299.99688 * 17 16 15 42 42 H 1.09000 * 109.46776 * 60.00230 * 17 16 15 43 43 H 1.08998 * 109.47447 * 299.99852 * 18 17 16 44 44 H 1.09003 * 109.46867 * 60.00091 * 18 17 16 45 45 H 0.97006 * 120.00147 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2763 0.0010 -0.0002 6 6 3.5909 -1.1978 0.0012 7 6 2.2020 -1.2021 -0.0049 8 7 1.5046 -2.4152 -0.0093 9 6 2.0856 -3.5282 0.4808 10 8 3.1717 -3.4599 1.0162 11 6 1.3856 -4.8576 0.3634 12 8 2.2094 -5.8929 0.9615 13 6 1.7262 -7.1450 0.9391 14 8 0.6508 -7.3687 0.4360 15 6 2.5253 -8.2719 1.5415 16 6 1.7549 -9.5843 1.3841 17 6 2.5659 -10.7283 1.9963 18 6 1.7951 -12.0406 1.8394 19 6 2.5941 -13.1674 2.4418 20 1 3.5553 -12.9675 2.8919 21 6 2.0976 -14.4535 2.4193 22 7 0.9269 -14.6970 1.8717 23 14 3.0877 -15.8502 3.1666 24 1 2.7271 -16.0014 4.5992 25 1 2.7863 -17.1123 2.4444 26 1 4.5368 -15.5472 3.0503 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6584 2.1311 0.0004 31 1 4.1193 2.1329 -0.0010 32 1 5.3562 0.0050 -0.0002 33 1 4.1344 -2.1312 0.0010 34 1 0.6031 -2.4551 -0.3651 35 1 0.4275 -4.8107 0.8812 36 1 1.2190 -5.0889 -0.6886 37 1 3.4848 -8.3506 1.0304 38 1 2.6927 -8.0731 2.6001 39 1 0.7953 -9.5058 1.8950 40 1 1.5878 -9.7829 0.3255 41 1 3.5256 -10.8069 1.4858 42 1 2.7325 -10.5295 3.0550 43 1 0.8354 -11.9617 2.3502 44 1 1.6280 -12.2395 0.7808 45 1 0.5774 -15.6017 1.8562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:51 Heat of formation + Delta-G solvation = -114.833943 kcal Electronic energy + Delta-G solvation = -24747.368120 eV Core-core repulsion = 20922.324253 eV Total energy + Delta-G solvation = -3825.043867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.28634 -40.48614 -38.92707 -36.72330 -35.36776 -35.01169 -33.03911 -32.71097 -31.04530 -30.01569 -28.63453 -27.20680 -25.79205 -23.64250 -22.73439 -21.79713 -20.95182 -20.66590 -20.05202 -18.45878 -17.89858 -17.20668 -17.13072 -16.40587 -16.17304 -15.95136 -15.83415 -15.13682 -14.73007 -14.53865 -14.40882 -14.24515 -14.06243 -13.58826 -13.27612 -13.02677 -12.87854 -12.64086 -12.57934 -12.29437 -11.91502 -11.76634 -11.68332 -11.65876 -11.08020 -11.01361 -10.97636 -10.64602 -10.60739 -10.48869 -10.46854 -10.18007 -9.66125 -9.30058 -9.13237 -9.03031 -8.48330 -8.32042 -5.96980 -3.99474 0.81959 1.00353 1.88201 2.02877 2.15943 2.92802 3.33820 3.39978 3.40234 3.43375 3.97876 4.35957 4.41189 4.48102 4.57742 4.60378 4.70488 4.78183 4.81419 4.99948 5.06936 5.08764 5.20862 5.25026 5.26593 5.38709 5.41463 5.66902 5.68419 5.82619 5.95082 6.03514 6.08075 6.13051 6.19412 6.21894 6.44564 6.63552 6.74936 6.77788 6.92681 7.15071 7.50268 7.66154 7.71518 7.85947 8.03623 8.45606 9.08019 9.64450 11.14287 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.042126 B = 0.001558 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.512501 B =17972.470491 C =18523.565335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C -0.101 4.101 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.127 4.127 7 C 0.149 3.851 8 N -0.668 5.668 9 C 0.515 3.485 10 O -0.490 6.490 11 C 0.048 3.952 12 O -0.337 6.337 13 C 0.463 3.537 14 O -0.503 6.503 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.111 4.111 18 C 0.020 3.980 19 C -0.521 4.521 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.413 0.587 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 34.709 -6.090 35.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.122 4.122 6 C -0.147 4.147 7 C 0.055 3.945 8 N -0.314 5.314 9 C 0.302 3.698 10 O -0.362 6.362 11 C -0.030 4.030 12 O -0.253 6.253 13 C 0.307 3.693 14 O -0.390 6.390 15 C -0.147 4.147 16 C -0.146 4.146 17 C -0.148 4.148 18 C -0.017 4.017 19 C -0.560 4.560 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.250 0.750 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.561 34.459 -5.902 34.965 hybrid contribution -0.178 -0.748 0.128 0.779 sum 0.384 33.711 -5.774 34.205 Atomic orbital electron populations 1.20748 0.90896 1.03194 1.02465 1.19623 0.96080 0.91717 1.04577 1.20840 0.94219 0.96799 1.00126 1.21147 0.94233 0.98221 1.01779 1.21090 1.00145 0.91875 0.99108 1.21445 0.92399 1.00068 1.00834 1.17579 0.91525 0.84131 1.01273 1.43351 1.19216 1.06923 1.61945 1.20323 0.86445 0.85022 0.78058 1.90741 1.20199 1.85662 1.39639 1.22533 0.94366 0.84813 1.01268 1.86617 1.48503 1.17131 1.73087 1.24409 0.85770 0.82655 0.76511 1.90682 1.22264 1.83814 1.42248 1.21644 0.99907 0.90401 1.02774 1.21594 0.99103 0.91321 1.02566 1.21657 0.98631 0.95389 0.99144 1.19099 0.95379 0.89994 0.97255 1.21280 1.04485 0.92527 1.37676 0.92663 1.25035 0.95057 0.98905 0.95527 1.69972 1.17972 1.20670 1.44853 0.86601 0.80465 0.81752 0.79206 1.20701 1.21257 1.19892 0.90941 0.91789 0.90859 0.85672 0.85937 0.85617 0.83619 0.75015 0.87779 0.87638 0.87565 0.87563 0.91488 0.91478 0.93119 0.93128 0.96536 0.96527 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 9.44 36.00 0.34 -0.15 16 2 C -0.12 -0.82 5.90 -104.43 -0.62 -1.44 16 3 C -0.10 -0.66 9.70 -39.61 -0.38 -1.05 16 4 C -0.13 -0.92 10.04 -39.55 -0.40 -1.32 16 5 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 6 C -0.13 -1.25 8.72 -39.39 -0.34 -1.59 16 7 C 0.15 1.29 6.41 -83.69 -0.54 0.75 16 8 N -0.67 -4.76 4.97 -9.86 -0.05 -4.81 16 9 C 0.52 5.01 7.71 -10.99 -0.08 4.93 16 10 O -0.49 -6.66 13.66 -14.10 -0.19 -6.85 16 11 C 0.05 0.43 5.95 36.00 0.21 0.64 16 12 O -0.34 -4.21 9.76 -45.90 -0.45 -4.66 16 13 C 0.46 6.32 7.96 36.01 0.29 6.61 16 14 O -0.50 -7.99 15.73 -18.75 -0.29 -8.29 16 15 C -0.11 -1.44 5.81 -27.88 -0.16 -1.61 16 16 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 17 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 18 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 19 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 23 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.24 7.00 -51.93 -0.36 -0.13 16 29 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 31 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.15 1.65 5.79 -52.48 -0.30 1.34 16 34 H 0.41 1.57 7.42 -40.82 -0.30 1.27 16 35 H 0.10 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.11 0.77 8.13 -51.93 -0.42 0.34 16 37 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 40 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -35.45 383.12 -9.23 -44.68 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.85 Total: -3.07 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.89 Total: -13.06 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.69 Total: -31.31 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.94 Total: -19.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.45 -9.23 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.151 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds