Wall clock time and date at job start Tue Mar 31 2020 12:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 119.96737 * 2 1 4 4 C 1.38280 * 120.14276 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.96502 * 180.02562 * 4 3 2 6 6 C 1.38114 * 120.06783 * 0.02988 * 4 3 2 7 7 C 1.38873 * 119.93137 * 359.97438 * 6 4 3 8 8 N 1.39930 * 120.06994 * 180.02562 * 7 6 4 9 9 C 1.34776 * 120.00088 * 324.92785 * 8 7 6 10 10 O 1.21291 * 119.99844 * 4.35095 * 9 8 7 11 11 C 1.50697 * 120.00098 * 184.35729 * 9 8 7 12 12 H 1.09007 * 109.46708 * 304.99440 * 11 9 8 13 13 C 1.53002 * 109.47130 * 64.99267 * 11 9 8 14 14 O 1.45200 * 109.47347 * 184.99985 * 11 9 8 15 15 C 1.34222 * 117.00469 * 149.99966 * 14 11 9 16 16 O 1.20827 * 119.99659 * 359.97438 * 15 14 11 17 17 C 1.50693 * 120.00312 * 179.97438 * 15 14 11 18 18 C 1.53005 * 109.47384 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47087 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00460 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99589 * 180.02562 * 19 18 17 22 22 N 1.31525 * 119.99699 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00425 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47379 * 90.00027 * 23 21 19 25 25 H 1.48503 * 109.47187 * 210.00407 * 23 21 19 26 26 H 1.48501 * 109.47094 * 330.00256 * 23 21 19 27 27 C 1.38119 * 119.95984 * 180.28282 * 2 1 3 28 28 H 1.09001 * 109.46593 * 89.99588 * 1 2 3 29 29 H 1.09000 * 109.47230 * 209.99668 * 1 2 3 30 30 H 1.08998 * 109.46885 * 329.99660 * 1 2 3 31 31 H 1.07996 * 119.92916 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47167 * 270.02119 * 5 4 3 33 33 H 1.08999 * 109.46884 * 30.03009 * 5 4 3 34 34 H 1.09001 * 109.46892 * 150.02882 * 5 4 3 35 35 H 1.08006 * 120.03490 * 179.97438 * 6 4 3 36 36 H 0.96993 * 119.99806 * 144.64479 * 8 7 6 37 37 H 1.08997 * 109.47015 * 300.00052 * 13 11 9 38 38 H 1.09000 * 109.46822 * 60.00469 * 13 11 9 39 39 H 1.09005 * 109.46669 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47280 * 299.99451 * 17 15 14 41 41 H 1.09002 * 109.47432 * 59.99502 * 17 15 14 42 42 H 1.08997 * 109.47073 * 299.99832 * 18 17 15 43 43 H 1.08994 * 109.46934 * 59.99784 * 18 17 15 44 44 H 0.96999 * 119.99334 * 179.97438 * 22 21 19 45 45 H 1.07999 * 120.04152 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5805 1.2022 0.0005 5 6 4.3293 2.5100 0.0011 6 6 4.2762 0.0090 0.0004 7 6 3.5855 -1.1958 0.0004 8 7 4.2874 -2.4063 0.0008 9 6 5.4520 -2.5103 -0.6694 10 8 5.9316 -1.5344 -1.2068 11 6 6.1583 -3.8390 -0.7512 12 1 6.3222 -4.2258 0.2547 13 6 5.2984 -4.8258 -1.5434 14 8 7.4368 -3.6673 -1.4178 15 6 8.4266 -4.5009 -1.0616 16 8 8.2314 -5.3459 -0.2202 17 6 9.7814 -4.3831 -1.7109 18 6 10.7197 -5.4425 -1.1293 19 6 12.0746 -5.3242 -1.7783 20 1 12.2490 -4.5693 -2.5307 21 6 13.0914 -6.1805 -1.4122 22 7 14.2738 -6.0776 -1.9790 23 14 12.7897 -7.4867 -0.1114 24 1 12.3107 -8.7324 -0.7625 25 1 14.0549 -7.7629 0.6155 26 1 11.7636 -7.0031 0.8471 27 6 2.1968 -1.1966 -0.0059 28 1 -0.3632 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6561 2.1322 -0.0004 32 1 4.5098 2.8258 -1.0264 33 1 3.7374 3.2672 0.5154 34 1 5.2822 2.3829 0.5149 35 1 5.3562 0.0129 0.0004 36 1 3.9377 -3.1694 0.4869 37 1 4.3387 -4.9546 -1.0428 38 1 5.1346 -4.4389 -2.5491 39 1 5.8091 -5.7870 -1.6021 40 1 9.6835 -4.5349 -2.7859 41 1 10.1909 -3.3912 -1.5199 42 1 10.8176 -5.2903 -0.0544 43 1 10.3104 -6.4345 -1.3200 44 1 14.9891 -6.6798 -1.7211 45 1 1.6568 -2.1319 -0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:26 Heat of formation + Delta-G solvation = -112.870533 kcal Electronic energy + Delta-G solvation = -25729.244452 eV Core-core repulsion = 21904.285725 eV Total energy + Delta-G solvation = -3824.958727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12043 -40.19300 -38.96498 -36.43704 -35.36923 -33.81918 -33.66960 -32.56892 -31.37286 -30.31652 -27.56167 -27.05401 -26.65634 -25.14845 -22.87237 -21.55358 -21.39184 -20.28597 -19.87521 -18.04833 -17.83207 -16.86341 -16.70644 -16.41397 -16.19659 -15.72008 -15.65559 -14.93463 -14.32677 -14.24565 -14.09092 -13.78999 -13.69817 -13.51257 -13.29863 -13.23598 -12.88174 -12.71392 -12.63950 -12.48810 -12.38153 -12.06698 -11.90029 -11.75986 -11.49514 -11.41406 -11.05003 -10.82834 -10.46900 -10.36218 -10.20852 -10.05675 -9.88082 -9.73942 -9.27556 -8.84331 -8.57007 -8.43100 -6.08187 -4.08233 0.95693 1.08763 2.16668 2.24656 2.57687 3.16690 3.32514 3.39668 3.44287 3.47966 4.17138 4.44573 4.44942 4.48800 4.58109 4.71352 4.81978 4.92852 4.98877 5.00977 5.06700 5.21736 5.26180 5.27412 5.38360 5.38823 5.43598 5.43905 5.51180 5.62319 5.78161 5.82234 5.97353 5.98511 6.02836 6.08135 6.24792 6.36651 6.39257 6.66569 6.76839 6.95667 7.20258 7.28026 7.68545 7.73528 8.07922 8.45642 8.94461 9.53142 11.04373 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.002178 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.991336 B =12852.376659 C =13486.870801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.064 4.064 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.154 3.846 8 N -0.672 5.672 9 C 0.518 3.482 10 O -0.491 6.491 11 C 0.068 3.932 12 H 0.112 0.888 13 C -0.164 4.164 14 O -0.334 6.334 15 C 0.460 3.540 16 O -0.510 6.510 17 C -0.094 4.094 18 C -0.001 4.001 19 C -0.527 4.527 20 H 0.076 0.924 21 C 0.070 3.930 22 N -0.899 5.899 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.262 1.262 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.140 0.860 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.026 0.974 43 H 0.022 0.978 44 H 0.264 0.736 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.024 11.889 5.218 32.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.068 4.068 3 C -0.155 4.155 4 C -0.065 4.065 5 C -0.171 4.171 6 C -0.146 4.146 7 C 0.060 3.940 8 N -0.319 5.319 9 C 0.305 3.695 10 O -0.363 6.363 11 C 0.009 3.991 12 H 0.129 0.871 13 C -0.222 4.222 14 O -0.250 6.250 15 C 0.304 3.696 16 O -0.397 6.397 17 C -0.132 4.132 18 C -0.039 4.039 19 C -0.565 4.565 20 H 0.094 0.906 21 C -0.131 4.131 22 N -0.538 5.538 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.186 1.186 27 C -0.172 4.172 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.248 0.752 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -29.502 12.210 5.047 32.325 hybrid contribution -0.273 -1.305 0.958 1.642 sum -29.775 10.905 6.006 32.273 Atomic orbital electron populations 1.20780 0.90901 1.02807 1.02444 1.19648 0.95933 0.92441 0.98744 1.20899 0.93464 0.97550 1.03597 1.19824 0.93605 0.95154 0.97883 1.20803 1.00043 0.93606 1.02682 1.21210 1.01302 0.90346 1.01769 1.17665 0.90662 0.85356 1.00272 1.43364 1.23056 1.13339 1.52179 1.20463 0.80603 0.90488 0.77994 1.90754 1.63742 1.38291 1.43520 1.22252 0.83876 0.92870 1.00089 0.87066 1.22151 0.99358 0.99356 1.01297 1.86739 1.19250 1.57375 1.61665 1.24951 0.86804 0.77499 0.80332 1.90609 1.82565 1.34717 1.31785 1.21584 0.85668 1.04442 1.01491 1.19492 0.94064 0.93266 0.97054 1.21025 0.93337 1.18626 1.23538 0.90576 1.24962 0.94898 0.97206 0.96078 1.69910 1.02500 1.38560 1.42800 0.86797 0.77827 0.82300 0.82616 1.20169 1.21306 1.18637 1.20720 0.91832 0.98411 1.06193 0.91065 0.91518 0.91422 0.86037 0.90844 0.91480 0.91290 0.84247 0.75179 0.90469 0.90722 0.90051 0.88059 0.88015 0.95590 0.96011 0.92587 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.07 -0.53 5.88 -104.65 -0.62 -1.15 16 3 C -0.14 -1.16 9.35 -39.55 -0.37 -1.53 16 4 C -0.06 -0.63 5.88 -104.65 -0.62 -1.25 16 5 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 6 C -0.13 -1.48 8.35 -39.39 -0.33 -1.81 16 7 C 0.15 1.60 6.30 -83.69 -0.53 1.08 16 8 N -0.67 -6.27 5.30 -9.86 -0.05 -6.33 16 9 C 0.52 6.57 7.02 -10.99 -0.08 6.49 16 10 O -0.49 -8.09 13.95 -14.06 -0.20 -8.28 16 11 C 0.07 0.86 2.98 -27.88 -0.08 0.78 16 12 H 0.11 1.33 7.16 -51.92 -0.37 0.96 16 13 C -0.16 -1.61 9.50 37.16 0.35 -1.25 16 14 O -0.33 -5.50 9.42 -45.87 -0.43 -5.93 16 15 C 0.46 8.48 7.93 36.00 0.29 8.76 16 16 O -0.51 -10.27 15.20 -18.75 -0.29 -10.55 16 17 C -0.09 -1.86 5.75 -27.88 -0.16 -2.02 16 18 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 19 C -0.53 -14.87 9.66 -34.44 -0.33 -15.20 16 20 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 23 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 27 C -0.15 -1.27 9.62 -39.39 -0.38 -1.65 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.14 1.88 6.23 -52.48 -0.33 1.55 16 36 H 0.41 2.40 8.77 -40.82 -0.36 2.04 16 37 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 43 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -34.93 381.62 -8.32 -43.24 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.89 Total: -0.79 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.32 Total: -7.68 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.72 Total: -33.11 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.91 Total: -24.77 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.93 -8.32 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.627 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds