Wall clock time and date at job start Tue Mar 31 2020 12:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 119.96737 * 2 1 4 4 C 1.38280 * 120.14276 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.96502 * 180.02562 * 4 3 2 6 6 C 1.38114 * 120.06783 * 0.02988 * 4 3 2 7 7 C 1.38873 * 119.93137 * 359.97438 * 6 4 3 8 8 N 1.39930 * 120.06994 * 180.02562 * 7 6 4 9 9 C 1.34776 * 120.00088 * 324.92785 * 8 7 6 10 10 O 1.21291 * 119.99844 * 4.35095 * 9 8 7 11 11 C 1.50697 * 120.00098 * 184.35729 * 9 8 7 12 12 H 1.09007 * 109.46708 * 304.99440 * 11 9 8 13 13 C 1.53002 * 109.47130 * 64.99267 * 11 9 8 14 14 O 1.45200 * 109.47347 * 184.99985 * 11 9 8 15 15 C 1.34222 * 117.00469 * 149.99966 * 14 11 9 16 16 O 1.20827 * 119.99659 * 359.97438 * 15 14 11 17 17 C 1.50693 * 120.00312 * 179.97438 * 15 14 11 18 18 C 1.53005 * 109.47384 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47087 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00460 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99589 * 180.02562 * 19 18 17 22 22 N 1.31525 * 119.99699 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00425 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47379 * 90.00027 * 23 21 19 25 25 H 1.48503 * 109.47187 * 210.00407 * 23 21 19 26 26 H 1.48501 * 109.47094 * 330.00256 * 23 21 19 27 27 C 1.38119 * 119.95984 * 180.28282 * 2 1 3 28 28 H 1.09001 * 109.46593 * 89.99588 * 1 2 3 29 29 H 1.09000 * 109.47230 * 209.99668 * 1 2 3 30 30 H 1.08998 * 109.46885 * 329.99660 * 1 2 3 31 31 H 1.07996 * 119.92916 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47167 * 270.02119 * 5 4 3 33 33 H 1.08999 * 109.46884 * 30.03009 * 5 4 3 34 34 H 1.09001 * 109.46892 * 150.02882 * 5 4 3 35 35 H 1.08006 * 120.03490 * 179.97438 * 6 4 3 36 36 H 0.96993 * 119.99806 * 144.64479 * 8 7 6 37 37 H 1.08997 * 109.47015 * 300.00052 * 13 11 9 38 38 H 1.09000 * 109.46822 * 60.00469 * 13 11 9 39 39 H 1.09005 * 109.46669 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47280 * 299.99451 * 17 15 14 41 41 H 1.09002 * 109.47432 * 59.99502 * 17 15 14 42 42 H 1.08997 * 109.47073 * 299.99832 * 18 17 15 43 43 H 1.08994 * 109.46934 * 59.99784 * 18 17 15 44 44 H 0.96999 * 119.99334 * 179.97438 * 22 21 19 45 45 H 1.07999 * 120.04152 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5805 1.2022 0.0005 5 6 4.3293 2.5100 0.0011 6 6 4.2762 0.0090 0.0004 7 6 3.5855 -1.1958 0.0004 8 7 4.2874 -2.4063 0.0008 9 6 5.4520 -2.5103 -0.6694 10 8 5.9316 -1.5344 -1.2068 11 6 6.1583 -3.8390 -0.7512 12 1 6.3222 -4.2258 0.2547 13 6 5.2984 -4.8258 -1.5434 14 8 7.4368 -3.6673 -1.4178 15 6 8.4266 -4.5009 -1.0616 16 8 8.2314 -5.3459 -0.2202 17 6 9.7814 -4.3831 -1.7109 18 6 10.7197 -5.4425 -1.1293 19 6 12.0746 -5.3242 -1.7783 20 1 12.2490 -4.5693 -2.5307 21 6 13.0914 -6.1805 -1.4122 22 7 14.2738 -6.0776 -1.9790 23 14 12.7897 -7.4867 -0.1114 24 1 12.3107 -8.7324 -0.7625 25 1 14.0549 -7.7629 0.6155 26 1 11.7636 -7.0031 0.8471 27 6 2.1968 -1.1966 -0.0059 28 1 -0.3632 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6561 2.1322 -0.0004 32 1 4.5098 2.8258 -1.0264 33 1 3.7374 3.2672 0.5154 34 1 5.2822 2.3829 0.5149 35 1 5.3562 0.0129 0.0004 36 1 3.9377 -3.1694 0.4869 37 1 4.3387 -4.9546 -1.0428 38 1 5.1346 -4.4389 -2.5491 39 1 5.8091 -5.7870 -1.6021 40 1 9.6835 -4.5349 -2.7859 41 1 10.1909 -3.3912 -1.5199 42 1 10.8176 -5.2903 -0.0544 43 1 10.3104 -6.4345 -1.3200 44 1 14.9891 -6.6798 -1.7211 45 1 1.6568 -2.1319 -0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:25 Heat of formation + Delta-G solvation = -133.027151 kcal Electronic energy + Delta-G solvation = -25730.118509 eV Core-core repulsion = 21904.285725 eV Total energy + Delta-G solvation = -3825.832783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.16448 -41.35541 -39.84485 -37.77942 -36.27091 -35.65479 -34.42255 -33.76012 -33.15305 -31.07742 -28.49403 -28.13786 -27.67713 -26.14890 -24.19916 -22.87033 -22.12210 -21.44516 -21.13691 -19.48101 -19.00533 -18.50391 -17.70197 -17.42710 -17.26021 -16.80817 -16.65370 -16.30642 -15.91744 -15.40634 -15.04417 -14.85246 -14.80317 -14.43651 -14.35928 -14.09233 -14.01448 -13.87147 -13.49151 -13.39223 -13.31521 -13.02675 -12.95832 -12.81054 -12.68436 -12.48829 -12.28865 -12.06774 -12.03756 -11.97410 -11.81050 -11.54659 -11.43166 -11.26265 -10.88966 -10.79238 -9.52368 -9.17324 -8.32052 -6.37030 0.21530 0.38991 1.05735 1.16666 1.30693 1.35037 1.37022 1.50531 2.09977 2.34541 2.75015 3.03039 3.28540 3.63542 3.74651 3.81448 3.87550 3.88022 4.20378 4.26180 4.31469 4.34580 4.38776 4.47585 4.53670 4.57799 4.66708 4.76081 4.80580 4.84791 4.89207 4.90347 5.00495 5.08777 5.17248 5.23934 5.27750 5.34350 5.34467 5.39334 5.56908 5.60699 5.67644 6.07169 6.18359 6.20819 6.63085 6.72716 6.87678 7.27905 8.83609 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.002178 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.991336 B =12852.376659 C =13486.870801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.078 4.078 5 C -0.114 4.114 6 C -0.156 4.156 7 C 0.135 3.865 8 N -0.651 5.651 9 C 0.521 3.479 10 O -0.538 6.538 11 C 0.062 3.938 12 H 0.121 0.879 13 C -0.159 4.159 14 O -0.342 6.342 15 C 0.473 3.527 16 O -0.528 6.528 17 C -0.093 4.093 18 C 0.004 3.996 19 C -0.535 4.535 20 H 0.048 0.952 21 C 0.012 3.988 22 N -0.943 5.943 23 Si 0.943 3.057 24 H -0.265 1.265 25 H -0.280 1.280 26 H -0.255 1.255 27 C -0.148 4.148 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.430 0.570 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.268 0.732 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.672 11.284 6.371 36.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.069 4.069 3 C -0.158 4.158 4 C -0.078 4.078 5 C -0.171 4.171 6 C -0.176 4.176 7 C 0.042 3.958 8 N -0.299 5.299 9 C 0.307 3.693 10 O -0.413 6.413 11 C 0.004 3.996 12 H 0.139 0.861 13 C -0.216 4.216 14 O -0.258 6.258 15 C 0.318 3.682 16 O -0.417 6.417 17 C -0.130 4.130 18 C -0.033 4.033 19 C -0.572 4.572 20 H 0.066 0.934 21 C -0.186 4.186 22 N -0.583 5.583 23 Si 0.767 3.233 24 H -0.190 1.190 25 H -0.206 1.206 26 H -0.179 1.179 27 C -0.168 4.168 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.270 0.730 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -33.206 11.602 6.216 35.719 hybrid contribution 0.753 -0.985 0.566 1.363 sum -32.453 10.617 6.782 34.812 Atomic orbital electron populations 1.20841 0.88545 1.04072 1.03267 1.20084 0.97634 0.92014 0.97189 1.21216 0.92869 0.98975 1.02691 1.20067 0.94607 0.95139 0.98002 1.20830 0.99903 0.93506 1.02842 1.21169 1.00220 0.92067 1.04125 1.17854 0.91633 0.85000 1.01344 1.43133 1.21806 1.13873 1.51131 1.20503 0.81179 0.89819 0.77764 1.90749 1.65163 1.39572 1.45831 1.22645 0.82454 0.93673 1.00824 0.86116 1.22189 1.00481 0.97732 1.01200 1.86671 1.20573 1.56665 1.61939 1.24354 0.86767 0.77373 0.79732 1.90595 1.82990 1.35554 1.32547 1.21363 0.86225 1.03300 1.02161 1.19318 0.92937 0.94707 0.96345 1.21338 0.95405 1.17618 1.22877 0.93410 1.25863 0.94625 0.99688 0.98414 1.70039 1.03597 1.39997 1.44679 0.85760 0.78050 0.79604 0.79908 1.19001 1.20563 1.17940 1.21020 0.90822 0.99941 1.04985 0.90301 0.90214 0.90317 0.83854 0.90866 0.89401 0.92164 0.87125 0.73007 0.86444 0.91017 0.90788 0.86793 0.87398 0.96247 0.95976 0.92287 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 71.24 0.71 -0.04 16 2 C -0.07 -0.91 5.88 -19.88 -0.12 -1.03 16 3 C -0.14 -2.10 9.35 22.29 0.21 -1.89 16 4 C -0.08 -1.52 5.88 -19.88 -0.12 -1.63 16 5 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 6 C -0.16 -3.76 8.35 22.39 0.19 -3.57 16 7 C 0.14 2.69 6.30 38.15 0.24 2.93 16 8 N -0.65 -11.30 5.30 -303.50 -1.61 -12.91 16 9 C 0.52 13.01 7.02 87.66 0.62 13.62 16 10 O -0.54 -18.33 13.95 15.68 0.22 -18.11 16 11 C 0.06 1.50 2.98 29.85 0.09 1.59 16 12 H 0.12 2.70 7.16 -2.38 -0.02 2.68 16 13 C -0.16 -2.75 9.50 71.98 0.68 -2.07 16 14 O -0.34 -11.15 9.42 -45.00 -0.42 -11.57 16 15 C 0.47 17.14 7.93 71.23 0.56 17.71 16 16 O -0.53 -20.68 15.20 21.96 0.33 -20.35 16 17 C -0.09 -3.65 5.75 29.85 0.17 -3.48 16 18 C 0.00 0.22 3.33 29.85 0.10 0.32 16 19 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 20 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 21 C 0.01 0.70 5.47 84.65 0.46 1.16 16 22 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 23 Si 0.94 45.30 27.47 68.60 1.88 47.19 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 27 C -0.15 -2.12 9.62 22.39 0.22 -1.90 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.36 8.09 -2.39 -0.02 0.34 16 30 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 31 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 35 H 0.11 3.27 6.23 -2.91 -0.02 3.25 16 36 H 0.43 3.91 8.77 -92.71 -0.81 3.10 16 37 H 0.12 1.06 8.08 -2.39 -0.02 1.04 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 41 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 42 H 0.02 0.95 7.16 -2.39 -0.02 0.93 16 43 H 0.02 1.06 7.53 -2.39 -0.02 1.04 16 44 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -77.41 381.62 5.81 -71.60 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.13 Total: 12.46 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.98 Total: -9.76 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.31 Total: -71.44 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: 0.13 Total: -50.03 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.19 kcal Total: -77.41 5.81 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.432 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds