Wall clock time and date at job start Tue Mar 31 2020 12:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47008 * 2 1 4 4 C 1.50699 * 109.47011 * 240.00474 * 2 1 3 5 5 H 1.08007 * 120.00142 * 237.69327 * 4 2 1 6 6 C 1.37879 * 120.00322 * 57.68802 * 4 2 1 7 7 N 1.31521 * 119.99559 * 6.58600 * 6 4 2 8 8 Si 1.86798 * 120.00432 * 186.58039 * 6 4 2 9 9 H 1.48508 * 109.47102 * 84.99742 * 8 6 4 10 10 H 1.48494 * 109.47438 * 204.99414 * 8 6 4 11 11 H 1.48506 * 109.47071 * 324.99940 * 8 6 4 12 12 C 1.52993 * 109.47676 * 120.00235 * 2 1 3 13 13 S 1.81402 * 109.47270 * 300.00222 * 12 2 1 14 14 O 1.42098 * 110.54268 * 68.37008 * 13 12 2 15 15 O 1.42101 * 110.53980 * 291.62321 * 13 12 2 16 16 N 1.65591 * 104.45112 * 179.97438 * 13 12 2 17 17 C 1.46502 * 119.99968 * 65.00022 * 16 13 12 18 18 C 1.53008 * 109.47074 * 214.99695 * 17 16 13 19 19 C 1.52995 * 109.47325 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47060 * 59.99923 * 19 18 17 21 21 C 1.52997 * 109.46869 * 60.00115 * 20 19 18 22 22 O 1.42899 * 109.47213 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47402 * 300.00365 * 20 19 18 24 24 C 1.52995 * 109.47312 * 95.00291 * 17 16 13 25 25 H 1.08995 * 109.47007 * 306.66026 * 1 2 3 26 26 H 1.08997 * 109.47589 * 66.67186 * 1 2 3 27 27 H 1.09003 * 109.46825 * 186.66722 * 1 2 3 28 28 H 1.08997 * 109.47291 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47220 * 300.00282 * 3 2 1 30 30 H 1.08995 * 109.47129 * 60.00413 * 3 2 1 31 31 H 0.97005 * 119.99539 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47760 * 179.97438 * 12 2 1 33 33 H 1.09008 * 109.46995 * 59.99707 * 12 2 1 34 34 H 0.97008 * 120.00214 * 244.99779 * 16 13 12 35 35 H 1.08993 * 109.47085 * 334.99557 * 17 16 13 36 36 H 1.09009 * 109.46736 * 60.00036 * 18 17 16 37 37 H 1.09003 * 109.47275 * 300.00381 * 18 17 16 38 38 H 1.09003 * 109.47336 * 300.00442 * 19 18 17 39 39 H 1.08993 * 109.47602 * 180.02562 * 19 18 17 40 40 H 1.08999 * 109.47386 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47584 * 300.00115 * 21 20 19 42 42 H 1.09009 * 109.47112 * 60.00014 * 21 20 19 43 43 H 0.96702 * 114.00384 * 180.02562 * 22 20 19 44 44 H 1.08996 * 109.47157 * 180.02562 * 23 20 19 45 45 H 1.09003 * 109.46745 * 299.99972 * 23 20 19 46 46 H 1.09009 * 109.46692 * 299.99719 * 24 17 16 47 47 H 1.09003 * 109.47652 * 59.99572 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6836 -1.5662 -1.1320 6 6 1.6603 -0.2677 -2.4822 7 7 0.9753 0.8479 -2.6084 8 14 2.1295 -1.2522 -3.9988 9 1 1.1190 -2.3155 -4.2307 10 1 2.1794 -0.3512 -5.1781 11 1 3.4629 -1.8729 -3.7931 12 6 2.0401 -0.7212 1.2491 13 16 1.4355 0.1337 2.7304 14 8 0.0281 -0.0185 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0532 -0.7409 3.9934 17 6 3.5016 -0.7982 4.2057 18 6 3.8850 -2.1811 4.7366 19 6 5.3977 -2.2411 4.9577 20 6 5.8074 -1.1731 5.9738 21 6 5.0877 -1.4280 7.2997 22 8 7.2202 -1.2296 6.1808 23 6 5.4241 0.2096 5.4430 24 6 3.9108 0.2696 5.2222 25 1 -0.3633 0.6136 0.8243 26 1 -0.3634 0.4069 -0.9436 27 1 -0.3633 -1.0208 0.1193 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 0.7133 1.1592 -3.4890 32 1 3.1301 -0.7216 1.2489 33 1 1.6767 -1.7490 1.2491 34 1 1.4560 -1.2154 4.5929 35 1 4.0147 -0.6165 3.2614 36 1 3.5935 -2.9419 4.0124 37 1 3.3719 -2.3628 5.6810 38 1 5.9105 -2.0595 4.0131 39 1 5.6709 -3.2263 5.3355 40 1 5.3799 -0.6674 8.0238 41 1 4.0100 -1.3852 7.1422 42 1 5.3608 -2.4132 7.6779 43 1 7.5512 -0.5791 6.8151 44 1 5.7164 0.9705 6.1667 45 1 5.9368 0.3911 4.4984 46 1 3.6376 1.2548 4.8440 47 1 3.3977 0.0879 6.1666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830791509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:11 Heat of formation + Delta-G solvation = -145.295652 kcal Electronic energy + Delta-G solvation = -26951.675985 eV Core-core repulsion = 23260.755151 eV Total energy + Delta-G solvation = -3690.920834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.99341 -36.74184 -36.35356 -36.27600 -35.28761 -33.40902 -31.68338 -31.08168 -29.45594 -26.72877 -26.47854 -25.72819 -25.23282 -23.03915 -22.02809 -19.83695 -19.21532 -18.62234 -17.34580 -17.07693 -16.45587 -15.92057 -15.56986 -15.30609 -14.96524 -14.74339 -14.68489 -14.15937 -13.48469 -13.22877 -13.10837 -12.93425 -12.67207 -12.51395 -12.42451 -12.26220 -12.02258 -11.95940 -11.91061 -11.42789 -11.37608 -11.28900 -11.12652 -11.03613 -10.93584 -10.76895 -10.68248 -10.49341 -10.36318 -10.31121 -10.09787 -9.93081 -9.67080 -9.59923 -9.23897 -8.71135 -8.38633 -6.04862 -4.16328 0.86659 3.17892 3.25765 3.32851 3.34361 3.90342 4.26750 4.36603 4.44062 4.46543 4.69358 4.75264 4.82430 4.93595 5.06869 5.11175 5.18961 5.22444 5.26282 5.33672 5.51134 5.60332 5.66895 5.68847 5.73714 5.83049 5.83906 5.92859 5.96440 6.03920 6.25458 6.30870 6.37956 6.67955 6.77662 6.90168 7.01883 7.13547 7.30345 7.43393 7.47837 7.66854 7.96739 8.09013 8.32738 8.81968 9.48880 10.96257 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.003734 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.718937 B = 7496.004221 C = 8253.367690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.583 4.583 13 S 2.593 3.407 14 O -0.967 6.967 15 O -0.962 6.962 16 N -1.126 6.126 17 C 0.153 3.847 18 C -0.126 4.126 19 C -0.104 4.104 20 C 0.127 3.873 21 C -0.182 4.182 22 O -0.562 6.562 23 C -0.143 4.143 24 C -0.138 4.138 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.097 0.903 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.410 0.590 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.375 0.625 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -4.563 17.748 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.717 4.717 13 S 2.691 3.309 14 O -0.957 6.957 15 O -0.952 6.952 16 N -0.882 5.882 17 C 0.045 3.955 18 C -0.165 4.165 19 C -0.142 4.142 20 C 0.087 3.913 21 C -0.239 4.239 22 O -0.368 6.368 23 C -0.181 4.181 24 C -0.177 4.177 25 H 0.045 0.955 26 H 0.113 0.887 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.243 0.757 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.222 0.778 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.095 -4.040 17.162 19.005 hybrid contribution 0.408 -0.827 -0.425 1.015 sum 7.503 -4.867 16.737 18.976 Atomic orbital electron populations 1.22207 0.96999 0.99644 1.02986 1.17925 0.92708 0.92313 0.89086 1.22304 0.99686 0.97738 1.02401 1.20934 1.30061 1.13781 0.89417 0.92307 1.24938 0.95074 0.94812 0.98891 1.69817 1.38501 1.20159 1.23542 0.86567 0.78875 0.79969 0.82322 1.20545 1.21189 1.19999 1.30548 1.11170 1.12895 1.17049 1.05634 0.74350 0.75333 0.75627 1.93555 1.29613 1.86710 1.85831 1.93539 1.78043 1.38135 1.85491 1.55965 1.13752 1.71009 1.47424 1.20757 0.79980 0.95254 0.99500 1.21916 0.95380 0.96860 1.02315 1.21410 0.95233 0.98415 0.99149 1.21230 0.80529 0.95037 0.94526 1.22596 1.02059 1.02166 0.97096 1.86547 1.22038 1.61386 1.66832 1.22220 0.96779 0.96664 1.02477 1.22123 0.94888 1.00820 0.99891 0.95540 0.88749 0.94607 0.94541 0.88444 0.95408 0.92714 0.86584 0.86277 0.75679 0.89606 0.90249 0.90785 0.90660 0.90831 0.92501 0.90775 0.92001 0.77844 0.91408 0.90611 0.89577 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 7.58 37.16 0.28 -3.66 16 2 C 0.08 1.97 0.52 -155.67 -0.08 1.89 16 3 C -0.16 -4.01 7.79 37.16 0.29 -3.72 16 4 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.49 7.75 -52.48 -0.41 1.09 16 6 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 7 N -0.88 -24.00 9.39 55.43 0.52 -23.48 16 8 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 C -0.58 -11.16 4.90 37.15 0.18 -10.98 16 13 S 2.59 46.69 4.41 -107.50 -0.47 46.22 16 14 O -0.97 -20.01 15.84 -57.54 -0.91 -20.92 16 15 O -0.96 -19.53 14.73 -57.54 -0.85 -20.38 16 16 N -1.13 -14.47 5.36 -4.89 -0.03 -14.50 16 17 C 0.15 1.74 2.56 -67.93 -0.17 1.56 16 18 C -0.13 -1.13 5.18 -26.73 -0.14 -1.27 16 19 C -0.10 -0.95 5.10 -26.73 -0.14 -1.09 16 20 C 0.13 1.11 1.15 -90.62 -0.10 1.00 16 21 C -0.18 -1.33 8.12 37.16 0.30 -1.03 16 22 O -0.56 -5.16 12.98 -35.23 -0.46 -5.61 16 23 C -0.14 -1.33 5.08 -26.71 -0.14 -1.47 16 24 C -0.14 -1.50 5.25 -26.71 -0.14 -1.64 16 25 H 0.03 0.62 5.96 -51.93 -0.31 0.31 16 26 H 0.09 2.49 5.99 -51.93 -0.31 2.18 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.10 2.58 6.01 -51.92 -0.31 2.27 16 30 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.12 2.00 7.44 -51.92 -0.39 1.62 16 33 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 34 H 0.41 4.37 8.80 -34.47 -0.30 4.06 16 35 H 0.09 1.02 7.15 -51.93 -0.37 0.65 16 36 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.53 4.81 -51.93 -0.25 0.28 16 42 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 43 H 0.37 2.04 9.05 45.56 0.41 2.45 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.12 7.43 -51.92 -0.39 0.74 16 47 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -32.14 358.34 -8.98 -41.12 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.94 Total: 8.79 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: -0.22 Total: -32.15 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.49 Total: -37.98 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -2.22 Total: -46.91 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 46.69 SS G_CDS: -0.47 Total: 46.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.14 -8.98 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830791509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.181 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds