Wall clock time and date at job start Tue Mar 31 2020 12:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47008 * 2 1 4 4 C 1.50699 * 109.47011 * 240.00474 * 2 1 3 5 5 H 1.08007 * 120.00142 * 237.69327 * 4 2 1 6 6 C 1.37879 * 120.00322 * 57.68802 * 4 2 1 7 7 N 1.31521 * 119.99559 * 6.58600 * 6 4 2 8 8 Si 1.86798 * 120.00432 * 186.58039 * 6 4 2 9 9 H 1.48508 * 109.47102 * 84.99742 * 8 6 4 10 10 H 1.48494 * 109.47438 * 204.99414 * 8 6 4 11 11 H 1.48506 * 109.47071 * 324.99940 * 8 6 4 12 12 C 1.52993 * 109.47676 * 120.00235 * 2 1 3 13 13 S 1.81402 * 109.47270 * 300.00222 * 12 2 1 14 14 O 1.42098 * 110.54268 * 68.37008 * 13 12 2 15 15 O 1.42101 * 110.53980 * 291.62321 * 13 12 2 16 16 N 1.65591 * 104.45112 * 179.97438 * 13 12 2 17 17 C 1.46502 * 119.99968 * 65.00022 * 16 13 12 18 18 C 1.53008 * 109.47074 * 214.99695 * 17 16 13 19 19 C 1.52995 * 109.47325 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47060 * 59.99923 * 19 18 17 21 21 C 1.52997 * 109.46869 * 60.00115 * 20 19 18 22 22 O 1.42899 * 109.47213 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47402 * 300.00365 * 20 19 18 24 24 C 1.52995 * 109.47312 * 95.00291 * 17 16 13 25 25 H 1.08995 * 109.47007 * 306.66026 * 1 2 3 26 26 H 1.08997 * 109.47589 * 66.67186 * 1 2 3 27 27 H 1.09003 * 109.46825 * 186.66722 * 1 2 3 28 28 H 1.08997 * 109.47291 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47220 * 300.00282 * 3 2 1 30 30 H 1.08995 * 109.47129 * 60.00413 * 3 2 1 31 31 H 0.97005 * 119.99539 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47760 * 179.97438 * 12 2 1 33 33 H 1.09008 * 109.46995 * 59.99707 * 12 2 1 34 34 H 0.97008 * 120.00214 * 244.99779 * 16 13 12 35 35 H 1.08993 * 109.47085 * 334.99557 * 17 16 13 36 36 H 1.09009 * 109.46736 * 60.00036 * 18 17 16 37 37 H 1.09003 * 109.47275 * 300.00381 * 18 17 16 38 38 H 1.09003 * 109.47336 * 300.00442 * 19 18 17 39 39 H 1.08993 * 109.47602 * 180.02562 * 19 18 17 40 40 H 1.08999 * 109.47386 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47584 * 300.00115 * 21 20 19 42 42 H 1.09009 * 109.47112 * 60.00014 * 21 20 19 43 43 H 0.96702 * 114.00384 * 180.02562 * 22 20 19 44 44 H 1.08996 * 109.47157 * 180.02562 * 23 20 19 45 45 H 1.09003 * 109.46745 * 299.99972 * 23 20 19 46 46 H 1.09009 * 109.46692 * 299.99719 * 24 17 16 47 47 H 1.09003 * 109.47652 * 59.99572 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6836 -1.5662 -1.1320 6 6 1.6603 -0.2677 -2.4822 7 7 0.9753 0.8479 -2.6084 8 14 2.1295 -1.2522 -3.9988 9 1 1.1190 -2.3155 -4.2307 10 1 2.1794 -0.3512 -5.1781 11 1 3.4629 -1.8729 -3.7931 12 6 2.0401 -0.7212 1.2491 13 16 1.4355 0.1337 2.7304 14 8 0.0281 -0.0185 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0532 -0.7409 3.9934 17 6 3.5016 -0.7982 4.2057 18 6 3.8850 -2.1811 4.7366 19 6 5.3977 -2.2411 4.9577 20 6 5.8074 -1.1731 5.9738 21 6 5.0877 -1.4280 7.2997 22 8 7.2202 -1.2296 6.1808 23 6 5.4241 0.2096 5.4430 24 6 3.9108 0.2696 5.2222 25 1 -0.3633 0.6136 0.8243 26 1 -0.3634 0.4069 -0.9436 27 1 -0.3633 -1.0208 0.1193 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 0.7133 1.1592 -3.4890 32 1 3.1301 -0.7216 1.2489 33 1 1.6767 -1.7490 1.2491 34 1 1.4560 -1.2154 4.5929 35 1 4.0147 -0.6165 3.2614 36 1 3.5935 -2.9419 4.0124 37 1 3.3719 -2.3628 5.6810 38 1 5.9105 -2.0595 4.0131 39 1 5.6709 -3.2263 5.3355 40 1 5.3799 -0.6674 8.0238 41 1 4.0100 -1.3852 7.1422 42 1 5.3608 -2.4132 7.6779 43 1 7.5512 -0.5791 6.8151 44 1 5.7164 0.9705 6.1667 45 1 5.9368 0.3911 4.4984 46 1 3.6376 1.2548 4.8440 47 1 3.3977 0.0879 6.1666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830791509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:10 Heat of formation + Delta-G solvation = -169.254595 kcal Electronic energy + Delta-G solvation = -26952.714923 eV Core-core repulsion = 23260.755151 eV Total energy + Delta-G solvation = -3691.959772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73199 -38.12829 -38.10060 -37.35827 -36.84719 -34.30119 -33.63916 -31.82914 -30.20669 -28.34099 -27.69742 -27.30260 -27.20007 -23.78629 -22.87257 -21.44160 -20.39276 -19.85283 -18.68297 -17.93229 -17.77777 -17.45930 -16.87397 -16.61958 -16.38288 -15.95492 -15.63771 -15.06923 -14.92892 -14.68413 -14.42956 -14.31410 -13.87604 -13.77965 -13.52243 -13.29113 -13.15424 -13.04657 -12.98067 -12.86127 -12.79060 -12.70687 -12.55529 -12.50310 -12.21509 -12.18234 -12.08724 -12.02851 -11.90637 -11.60274 -11.51308 -11.41399 -11.12851 -10.72366 -10.58058 -10.39047 -10.25134 -8.03776 -6.21714 -0.58636 1.44267 1.46014 1.53882 1.90745 2.44169 2.86786 3.18281 3.26425 3.36505 3.64834 3.73629 3.95628 4.03652 4.08032 4.15187 4.17071 4.30347 4.38561 4.45139 4.53595 4.59437 4.68247 4.84127 4.85085 4.86363 4.91753 4.98329 5.06979 5.08524 5.12014 5.13728 5.20912 5.23027 5.32435 5.38417 5.44408 5.49368 5.57264 5.64454 5.97081 6.11487 6.18238 6.34620 6.82799 6.94786 7.46333 8.95932 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.003734 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.718937 B = 7496.004221 C = 8253.367690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.268 1.268 12 C -0.589 4.589 13 S 2.613 3.387 14 O -0.994 6.994 15 O -0.987 6.987 16 N -1.107 6.107 17 C 0.143 3.857 18 C -0.119 4.119 19 C -0.107 4.107 20 C 0.128 3.872 21 C -0.179 4.179 22 O -0.578 6.578 23 C -0.140 4.140 24 C -0.138 4.138 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.424 0.576 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.390 0.610 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.619 -6.221 19.388 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.545 5.545 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.192 1.192 12 C -0.721 4.721 13 S 2.710 3.290 14 O -0.985 6.985 15 O -0.977 6.977 16 N -0.867 5.867 17 C 0.036 3.964 18 C -0.158 4.158 19 C -0.145 4.145 20 C 0.088 3.912 21 C -0.236 4.236 22 O -0.386 6.386 23 C -0.179 4.179 24 C -0.177 4.177 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.261 0.739 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.239 0.761 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.047 -5.701 18.808 21.237 hybrid contribution 0.164 -0.288 -0.867 0.928 sum 8.211 -5.989 17.941 20.620 Atomic orbital electron populations 1.22141 0.97779 0.99854 1.01708 1.17917 0.92261 0.92197 0.90949 1.22226 0.99694 0.98382 1.01382 1.21286 1.30015 1.13936 0.90423 0.91897 1.25670 0.95248 0.95614 1.01589 1.69958 1.39373 1.21319 1.23886 0.85652 0.78802 0.78597 0.79062 1.20211 1.21363 1.19244 1.30488 1.12367 1.13499 1.15746 1.04720 0.73427 0.75007 0.75818 1.93511 1.31545 1.87099 1.86310 1.93508 1.78340 1.39968 1.85896 1.55455 1.14838 1.70526 1.45841 1.21022 0.78516 0.97222 0.99676 1.21886 0.95440 0.95104 1.03336 1.21440 0.95135 0.99064 0.98870 1.21205 0.80637 0.94155 0.95184 1.22563 1.01969 1.02732 0.96338 1.86513 1.22275 1.62205 1.67630 1.22199 0.95486 0.97880 1.02308 1.22102 0.96142 0.99153 1.00320 0.95309 0.91162 0.93897 0.94320 0.90941 0.94901 0.92919 0.84887 0.84399 0.73930 0.90403 0.89568 0.88881 0.91878 0.90062 0.91415 0.90445 0.91730 0.76092 0.89973 0.92044 0.92144 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.77 7.58 71.98 0.55 -7.22 16 2 C 0.07 3.30 0.52 -52.93 -0.03 3.27 16 3 C -0.16 -7.90 7.79 71.98 0.56 -7.34 16 4 C -0.52 -26.83 8.01 25.60 0.20 -26.62 16 5 H 0.06 3.13 7.75 -2.91 -0.02 3.10 16 6 C 0.02 0.97 5.09 84.65 0.43 1.40 16 7 N -0.91 -50.22 9.39 21.45 0.20 -50.02 16 8 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 9 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 C -0.59 -21.86 4.90 71.98 0.35 -21.51 16 13 S 2.61 91.71 4.41 -56.49 -0.25 91.46 16 14 O -0.99 -40.36 15.84 -127.65 -2.02 -42.39 16 15 O -0.99 -39.83 14.73 -127.65 -1.88 -41.71 16 16 N -1.11 -26.23 5.36 -169.39 -0.91 -27.14 16 17 C 0.14 2.97 2.56 44.99 0.12 3.09 16 18 C -0.12 -1.80 5.18 30.60 0.16 -1.64 16 19 C -0.11 -1.72 5.10 30.59 0.16 -1.56 16 20 C 0.13 1.94 1.15 -10.80 -0.01 1.93 16 21 C -0.18 -2.05 8.12 71.98 0.58 -1.47 16 22 O -0.58 -9.39 12.98 -148.98 -1.93 -11.33 16 23 C -0.14 -2.39 5.08 30.61 0.16 -2.23 16 24 C -0.14 -2.76 5.25 30.61 0.16 -2.60 16 25 H 0.03 1.36 5.96 -2.39 -0.01 1.35 16 26 H 0.07 3.80 5.99 -2.39 -0.01 3.78 16 27 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 3.95 6.01 -2.38 -0.01 3.94 16 30 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 31 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 32 H 0.13 4.41 7.44 -2.39 -0.02 4.40 16 33 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 34 H 0.42 7.90 8.80 -96.74 -0.85 7.05 16 35 H 0.08 1.76 7.15 -2.39 -0.02 1.74 16 36 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.09 1.08 6.43 -2.39 -0.02 1.06 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.83 4.81 -2.39 -0.01 0.82 16 42 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.39 3.38 9.05 -74.06 -0.67 2.71 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 1.54 7.43 -2.38 -0.02 1.52 16 47 H 0.09 1.43 6.43 -2.39 -0.02 1.41 16 Total: -1.00 -68.61 358.34 -1.92 -70.53 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.54 Total: 29.07 kcal Atomic # 6 Polarization: -65.90 SS G_CDS: 3.39 Total: -62.51 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -0.71 Total: -77.16 kcal Atomic # 8 Polarization: -89.59 SS G_CDS: -5.84 Total: -95.42 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 91.71 SS G_CDS: -0.25 Total: 91.46 kcal Total: -68.61 -1.92 -70.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830791509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.728 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds