Wall clock time and date at job start Tue Mar 31 2020 12:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.48264 * 2 1 4 4 O 1.21279 * 119.99421 * 264.97119 * 3 2 1 5 5 N 1.34767 * 119.99882 * 84.97210 * 3 2 1 6 6 C 1.46508 * 119.99828 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47003 * 180.02562 * 6 5 3 8 8 C 1.38294 * 119.92983 * 90.00341 * 7 6 5 9 9 C 1.38096 * 120.06969 * 179.97438 * 8 7 6 10 10 C 1.38887 * 119.92909 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.06604 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00531 * 5.54199 * 11 10 9 13 13 H 1.07995 * 119.99432 * 354.93787 * 12 11 10 14 14 C 1.38650 * 120.00178 * 174.66237 * 12 11 10 15 15 N 1.31555 * 119.99962 * 0.27731 * 14 12 11 16 16 Si 1.86799 * 120.00030 * 180.27275 * 14 12 11 17 17 H 1.48501 * 109.47170 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47053 * 120.00131 * 16 14 12 19 19 H 1.48498 * 109.47480 * 240.00467 * 16 14 12 20 20 C 1.38871 * 119.86145 * 0.28182 * 10 9 8 21 21 C 1.38100 * 119.92983 * 359.42253 * 20 10 9 22 22 C 1.53089 * 109.48224 * 239.97387 * 2 1 3 23 23 C 1.53179 * 109.16612 * 182.39997 * 22 2 1 24 24 C 1.53177 * 109.03358 * 56.98136 * 23 22 2 25 25 C 1.53091 * 109.16270 * 303.02093 * 24 23 22 26 26 O 1.42901 * 109.41914 * 57.60840 * 25 24 23 27 27 H 1.09003 * 109.46812 * 60.00015 * 1 2 3 28 28 H 1.08994 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47419 * 300.00619 * 1 2 3 30 30 H 0.96997 * 120.00413 * 0.02562 * 5 3 2 31 31 H 1.08999 * 109.46855 * 60.00492 * 6 5 3 32 32 H 1.08993 * 109.47178 * 300.00478 * 6 5 3 33 33 H 1.08006 * 119.96631 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.04071 * 180.02562 * 9 8 7 35 35 H 0.97006 * 119.99546 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.03647 * 179.71990 * 20 10 9 37 37 H 1.07999 * 119.96606 * 180.27624 * 21 20 10 38 38 H 1.09000 * 109.52146 * 302.30874 * 22 2 1 39 39 H 1.08999 * 109.52292 * 62.42486 * 22 2 1 40 40 H 1.09003 * 109.54320 * 176.84479 * 23 22 2 41 41 H 1.09001 * 109.54092 * 297.11711 * 23 22 2 42 42 H 1.08996 * 109.52697 * 62.92915 * 24 23 22 43 43 H 1.09003 * 109.52298 * 183.05362 * 24 23 22 44 44 H 1.09007 * 109.48166 * 177.59663 * 25 24 23 45 45 H 1.09003 * 109.48092 * 297.61690 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3216 1.9616 -1.0463 5 7 2.1609 2.0901 1.1626 6 6 2.6501 3.4711 1.1627 7 6 2.7007 3.9860 2.5781 8 6 3.8493 3.8232 3.3309 9 6 3.8991 4.2944 4.6280 10 6 2.7941 4.9329 5.1762 11 8 2.8402 5.3976 6.4508 12 6 4.0233 5.3110 7.0917 13 1 4.8575 4.8130 6.6202 14 6 4.1704 5.8662 8.3536 15 7 3.1541 6.4728 8.9280 16 14 5.8117 5.7529 9.2383 17 1 6.7855 5.0269 8.3839 18 1 6.3202 7.1204 9.5154 19 1 5.6346 5.0217 10.5186 20 6 1.6404 5.0900 4.4195 21 6 1.5990 4.6220 3.1208 22 6 2.0406 -0.7222 -1.2495 23 6 3.5711 -0.7706 -1.2123 24 6 4.0178 -1.4598 0.0807 25 6 3.4308 -0.7091 1.2789 26 8 2.0067 -0.6741 1.1664 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9301 1.6574 1.9995 31 1 1.9782 4.0945 0.5727 32 1 3.6495 3.5025 0.7290 33 1 4.7087 3.3278 2.9036 34 1 4.7965 4.1674 5.2154 35 1 3.2570 6.8609 9.8110 36 1 0.7780 5.5820 4.8444 37 1 0.7036 4.7480 2.5303 38 1 1.6444 -1.7374 -1.2709 39 1 1.7137 -0.1850 -2.1399 40 1 3.9392 -1.3324 -2.0708 41 1 3.9688 0.2438 -1.2409 42 1 3.6617 -2.4899 0.0863 43 1 5.1061 -1.4504 0.1414 44 1 3.7102 -1.2201 2.2004 45 1 3.8194 0.3092 1.2957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837390847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:29 Heat of formation + Delta-G solvation = -96.880314 kcal Electronic energy + Delta-G solvation = -26804.937407 eV Core-core repulsion = 22980.672069 eV Total energy + Delta-G solvation = -3824.265339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.01978 -39.20781 -38.18631 -36.87425 -34.70022 -33.68544 -33.12858 -32.37647 -30.31647 -29.95234 -28.06403 -26.13408 -25.10745 -24.50285 -23.14130 -22.07986 -21.46043 -20.65156 -19.65954 -18.09707 -17.79724 -17.06542 -16.48564 -16.01325 -15.49723 -15.12095 -14.77409 -14.71704 -14.52409 -14.28989 -14.24248 -13.97424 -13.66211 -13.48775 -13.06764 -12.88418 -12.80671 -12.63075 -12.48069 -12.27442 -12.20598 -12.06381 -11.70017 -11.44859 -11.32618 -11.07697 -10.98259 -10.81193 -10.76832 -10.70684 -10.48958 -10.10519 -9.45555 -9.42027 -8.98921 -8.92456 -8.30864 -7.34418 -6.54721 -4.13590 2.03937 2.10822 2.50632 3.05263 3.08377 3.14015 3.19211 3.51446 3.88866 4.33723 4.45810 4.54898 4.62466 4.65751 4.74476 4.98082 4.99756 5.13830 5.19423 5.22605 5.27065 5.35716 5.38821 5.41564 5.53344 5.60036 5.62914 5.67017 5.76252 5.77161 5.81085 5.86836 5.89740 6.06714 6.09952 6.32201 6.45724 6.57618 6.77686 6.80852 6.93881 7.12010 7.24619 7.33138 7.56407 7.69558 7.90090 8.17199 8.90776 9.58815 10.62892 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002650 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.697451 B =10561.861553 C =11154.482875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.100 3.900 3 C 0.493 3.507 4 O -0.541 6.541 5 N -0.713 5.713 6 C 0.177 3.823 7 C -0.215 4.215 8 C -0.051 4.051 9 C -0.236 4.236 10 C 0.161 3.839 11 O -0.173 6.173 12 C -0.393 4.393 13 H 0.094 0.906 14 C 0.040 3.960 15 N -0.859 5.859 16 Si 0.942 3.058 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.195 4.195 21 C -0.054 4.054 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.156 4.156 25 C 0.050 3.950 26 O -0.364 6.364 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.407 0.593 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.271 0.729 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -14.074 -16.140 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 C 0.278 3.722 4 O -0.419 6.419 5 N -0.365 5.365 6 C 0.055 3.945 7 C -0.216 4.216 8 C -0.069 4.069 9 C -0.256 4.256 10 C 0.106 3.894 11 O -0.076 6.076 12 C -0.469 4.469 13 H 0.111 0.889 14 C -0.165 4.165 15 N -0.493 5.493 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.214 4.214 21 C -0.073 4.073 22 C -0.165 4.165 23 C -0.165 4.165 24 C -0.193 4.193 25 C -0.027 4.027 26 O -0.283 6.283 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.242 0.758 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.224 -13.512 -16.358 21.252 hybrid contribution 1.028 -0.098 0.768 1.286 sum -0.196 -13.610 -15.590 20.696 Atomic orbital electron populations 1.21750 0.90333 1.03871 1.03475 1.21809 0.96489 0.88236 0.87697 1.21201 0.78083 0.88810 0.84153 1.90679 1.49953 1.69828 1.31467 1.46450 1.65901 1.14876 1.09291 1.20007 0.99234 0.81038 0.94228 1.19187 0.96303 1.10292 0.95846 1.20615 0.96213 0.96735 0.93383 1.21155 1.00415 1.07255 0.96750 1.19434 0.93275 0.91254 0.85402 1.83978 1.34588 1.69701 1.19306 1.21405 0.87938 1.37942 0.99636 0.88869 1.25323 0.99425 0.95630 0.96093 1.70047 1.30326 1.33541 1.15408 0.85629 0.79938 0.78495 0.79273 1.19032 1.20052 1.20047 1.20210 0.98024 1.08753 0.94402 1.20523 0.96737 0.95992 0.94012 1.21968 0.96442 1.00819 0.97284 1.21648 0.95469 1.01797 0.97581 1.22188 1.01212 1.00425 0.95511 1.22762 0.80595 1.00498 0.98826 1.88010 1.21572 1.76732 1.41999 0.90402 0.90528 0.91074 0.75785 0.91494 0.91672 0.87523 0.85410 0.91908 0.86349 0.86981 0.90459 0.89760 0.91292 0.90972 0.90994 0.90798 0.88163 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.83 37.16 0.33 -0.89 16 2 C 0.10 1.07 1.04 -91.72 -0.10 0.97 16 3 C 0.49 6.41 4.82 -10.99 -0.05 6.35 16 4 O -0.54 -8.54 15.13 5.56 0.08 -8.45 16 5 N -0.71 -9.12 4.61 -61.47 -0.28 -9.40 16 6 C 0.18 2.47 5.80 -5.19 -0.03 2.44 16 7 C -0.21 -3.42 5.25 -104.58 -0.55 -3.97 16 8 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 9 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 12 C -0.39 -10.65 9.49 30.88 0.29 -10.35 16 13 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 15 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 16 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 20 C -0.19 -3.90 9.99 -39.40 -0.39 -4.30 16 21 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 22 C -0.13 -1.22 4.58 -26.59 -0.12 -1.34 16 23 C -0.13 -1.22 5.75 -26.55 -0.15 -1.37 16 24 C -0.16 -1.34 6.14 -26.59 -0.16 -1.50 16 25 C 0.05 0.49 6.48 37.20 0.24 0.73 16 26 O -0.36 -3.99 9.58 -35.23 -0.34 -4.33 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.41 5.05 7.89 -40.82 -0.32 4.72 16 31 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.84 6.72 -51.93 -0.35 0.49 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 45 H 0.06 0.63 6.52 -51.93 -0.34 0.29 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -30.46 366.00 -8.07 -38.54 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.61 Total: 8.39 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.18 Total: -16.56 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.48 Total: -33.25 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.25 Total: -17.56 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.46 -8.07 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837390847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.344 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds