Wall clock time and date at job start Tue Mar 31 2020 12:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.48264 * 2 1 4 4 O 1.21279 * 119.99421 * 264.97119 * 3 2 1 5 5 N 1.34767 * 119.99882 * 84.97210 * 3 2 1 6 6 C 1.46508 * 119.99828 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47003 * 180.02562 * 6 5 3 8 8 C 1.38294 * 119.92983 * 90.00341 * 7 6 5 9 9 C 1.38096 * 120.06969 * 179.97438 * 8 7 6 10 10 C 1.38887 * 119.92909 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.06604 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00531 * 5.54199 * 11 10 9 13 13 H 1.07995 * 119.99432 * 354.93787 * 12 11 10 14 14 C 1.38650 * 120.00178 * 174.66237 * 12 11 10 15 15 N 1.31555 * 119.99962 * 0.27731 * 14 12 11 16 16 Si 1.86799 * 120.00030 * 180.27275 * 14 12 11 17 17 H 1.48501 * 109.47170 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47053 * 120.00131 * 16 14 12 19 19 H 1.48498 * 109.47480 * 240.00467 * 16 14 12 20 20 C 1.38871 * 119.86145 * 0.28182 * 10 9 8 21 21 C 1.38100 * 119.92983 * 359.42253 * 20 10 9 22 22 C 1.53089 * 109.48224 * 239.97387 * 2 1 3 23 23 C 1.53179 * 109.16612 * 182.39997 * 22 2 1 24 24 C 1.53177 * 109.03358 * 56.98136 * 23 22 2 25 25 C 1.53091 * 109.16270 * 303.02093 * 24 23 22 26 26 O 1.42901 * 109.41914 * 57.60840 * 25 24 23 27 27 H 1.09003 * 109.46812 * 60.00015 * 1 2 3 28 28 H 1.08994 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47419 * 300.00619 * 1 2 3 30 30 H 0.96997 * 120.00413 * 0.02562 * 5 3 2 31 31 H 1.08999 * 109.46855 * 60.00492 * 6 5 3 32 32 H 1.08993 * 109.47178 * 300.00478 * 6 5 3 33 33 H 1.08006 * 119.96631 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.04071 * 180.02562 * 9 8 7 35 35 H 0.97006 * 119.99546 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.03647 * 179.71990 * 20 10 9 37 37 H 1.07999 * 119.96606 * 180.27624 * 21 20 10 38 38 H 1.09000 * 109.52146 * 302.30874 * 22 2 1 39 39 H 1.08999 * 109.52292 * 62.42486 * 22 2 1 40 40 H 1.09003 * 109.54320 * 176.84479 * 23 22 2 41 41 H 1.09001 * 109.54092 * 297.11711 * 23 22 2 42 42 H 1.08996 * 109.52697 * 62.92915 * 24 23 22 43 43 H 1.09003 * 109.52298 * 183.05362 * 24 23 22 44 44 H 1.09007 * 109.48166 * 177.59663 * 25 24 23 45 45 H 1.09003 * 109.48092 * 297.61690 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.3216 1.9616 -1.0463 5 7 2.1609 2.0901 1.1626 6 6 2.6501 3.4711 1.1627 7 6 2.7007 3.9860 2.5781 8 6 3.8493 3.8232 3.3309 9 6 3.8991 4.2944 4.6280 10 6 2.7941 4.9329 5.1762 11 8 2.8402 5.3976 6.4508 12 6 4.0233 5.3110 7.0917 13 1 4.8575 4.8130 6.6202 14 6 4.1704 5.8662 8.3536 15 7 3.1541 6.4728 8.9280 16 14 5.8117 5.7529 9.2383 17 1 6.7855 5.0269 8.3839 18 1 6.3202 7.1204 9.5154 19 1 5.6346 5.0217 10.5186 20 6 1.6404 5.0900 4.4195 21 6 1.5990 4.6220 3.1208 22 6 2.0406 -0.7222 -1.2495 23 6 3.5711 -0.7706 -1.2123 24 6 4.0178 -1.4598 0.0807 25 6 3.4308 -0.7091 1.2789 26 8 2.0067 -0.6741 1.1664 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9301 1.6574 1.9995 31 1 1.9782 4.0945 0.5727 32 1 3.6495 3.5025 0.7290 33 1 4.7087 3.3278 2.9036 34 1 4.7965 4.1674 5.2154 35 1 3.2570 6.8609 9.8110 36 1 0.7780 5.5820 4.8444 37 1 0.7036 4.7480 2.5303 38 1 1.6444 -1.7374 -1.2709 39 1 1.7137 -0.1850 -2.1399 40 1 3.9392 -1.3324 -2.0708 41 1 3.9688 0.2438 -1.2409 42 1 3.6617 -2.4899 0.0863 43 1 5.1061 -1.4504 0.1414 44 1 3.7102 -1.2201 2.2004 45 1 3.8194 0.3092 1.2957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837390847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:28 Heat of formation + Delta-G solvation = -115.940220 kcal Electronic energy + Delta-G solvation = -26805.763907 eV Core-core repulsion = 22980.672069 eV Total energy + Delta-G solvation = -3825.091838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94400 -40.83531 -39.24976 -38.43474 -35.86925 -34.55844 -34.24239 -33.90743 -31.86642 -31.39187 -28.79631 -27.76741 -26.62342 -25.31360 -24.09508 -23.66909 -22.40031 -22.03383 -20.65515 -19.87719 -18.92340 -18.64479 -17.39269 -16.97620 -16.64514 -16.40737 -16.29350 -15.94088 -15.68396 -15.57258 -15.32022 -15.22894 -15.01568 -14.83471 -14.42129 -14.25829 -13.81016 -13.65965 -13.44070 -13.32123 -13.16410 -13.09520 -13.04241 -12.89580 -12.59377 -12.36732 -12.29097 -12.10331 -12.08025 -11.78405 -11.52906 -11.21638 -10.95577 -10.82422 -10.34998 -10.09794 -9.83167 -9.02129 -8.49375 -6.17605 0.52050 0.55676 1.35580 1.42820 1.48946 1.53490 2.14801 2.16476 2.67086 2.84261 3.14696 3.47361 3.53914 3.75266 3.81108 3.87490 3.91463 3.99577 3.99970 4.14865 4.26918 4.40974 4.44896 4.54278 4.56815 4.67485 4.69634 4.73789 4.77960 4.84357 4.88911 5.00144 5.01564 5.08367 5.10894 5.12987 5.20039 5.24145 5.31923 5.39111 5.50377 5.67280 5.72231 5.99443 6.00484 6.13741 6.52223 6.95636 7.13589 7.74600 8.73736 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002650 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.697451 B =10561.861553 C =11154.482875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.101 3.899 3 C 0.495 3.505 4 O -0.569 6.569 5 N -0.710 5.710 6 C 0.183 3.817 7 C -0.184 4.184 8 C -0.046 4.046 9 C -0.243 4.243 10 C 0.124 3.876 11 O -0.229 6.229 12 C -0.413 4.413 13 H 0.104 0.896 14 C -0.021 4.021 15 N -0.919 5.919 16 Si 1.018 2.982 17 H -0.250 1.250 18 H -0.270 1.270 19 H -0.268 1.268 20 C -0.204 4.204 21 C -0.044 4.044 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.151 4.151 25 C 0.044 3.956 26 O -0.370 6.370 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.410 0.590 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.273 0.727 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -16.266 -18.437 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 C 0.281 3.719 4 O -0.449 6.449 5 N -0.361 5.361 6 C 0.060 3.940 7 C -0.185 4.185 8 C -0.064 4.064 9 C -0.262 4.262 10 C 0.073 3.927 11 O -0.135 6.135 12 C -0.489 4.489 13 H 0.121 0.879 14 C -0.219 4.219 15 N -0.557 5.557 16 Si 0.837 3.163 17 H -0.173 1.173 18 H -0.195 1.195 19 H -0.193 1.193 20 C -0.223 4.223 21 C -0.062 4.062 22 C -0.164 4.164 23 C -0.166 4.166 24 C -0.189 4.189 25 C -0.033 4.033 26 O -0.289 6.289 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.246 0.754 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.164 0.836 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.131 0.869 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.547 -15.739 -18.709 24.455 hybrid contribution 0.712 0.463 1.098 1.388 sum 0.165 -15.277 -17.611 23.314 Atomic orbital electron populations 1.21800 0.88989 1.05052 1.03582 1.21892 0.97469 0.86586 0.88221 1.21648 0.77193 0.89642 0.83425 1.90671 1.51147 1.70669 1.32395 1.46313 1.65847 1.14331 1.09653 1.19919 0.99952 0.81819 0.92305 1.19484 0.95179 1.07356 0.96447 1.20912 0.97717 0.95852 0.91935 1.21237 0.99487 1.07344 0.98107 1.19978 0.95265 0.92513 0.84968 1.83949 1.35245 1.72679 1.21593 1.21874 0.88441 1.38321 1.00273 0.87884 1.26582 1.03556 0.95066 0.96725 1.70186 1.33087 1.36185 1.16230 0.84536 0.74993 0.78788 0.77958 1.17346 1.19484 1.19331 1.20443 0.97210 1.09082 0.95585 1.20872 0.98246 0.94449 0.92682 1.21996 0.96498 1.01561 0.96382 1.21647 0.95472 1.00679 0.98784 1.22166 1.01802 1.00600 0.94288 1.22890 0.80147 1.00150 1.00094 1.88015 1.22206 1.76535 1.42157 0.89961 0.88870 0.91321 0.75356 0.90782 0.91198 0.84438 0.86133 0.91778 0.86624 0.83557 0.88612 0.90387 0.89920 0.93436 0.89868 0.89829 0.86931 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.83 71.98 0.64 -1.44 16 2 C 0.10 1.90 1.04 -11.51 -0.01 1.89 16 3 C 0.49 11.74 4.82 87.66 0.42 12.16 16 4 O -0.57 -16.87 15.13 -3.03 -0.05 -16.92 16 5 N -0.71 -16.20 4.61 -466.79 -2.15 -18.35 16 6 C 0.18 4.49 5.80 85.63 0.50 4.99 16 7 C -0.18 -5.33 5.25 -19.83 -0.10 -5.43 16 8 C -0.05 -1.46 9.69 22.25 0.22 -1.25 16 9 C -0.24 -9.97 9.17 22.39 0.21 -9.76 16 10 C 0.12 5.89 6.65 22.58 0.15 6.04 16 11 O -0.23 -13.37 9.76 -22.72 -0.22 -13.59 16 12 C -0.41 -23.41 9.49 67.92 0.64 -22.77 16 13 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 14 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 15 N -0.92 -55.47 13.67 21.61 0.30 -55.18 16 16 Si 1.02 41.87 29.55 68.60 2.03 43.90 16 17 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 20 C -0.20 -8.21 9.99 22.39 0.22 -7.99 16 21 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 22 C -0.13 -2.11 4.58 30.68 0.14 -1.97 16 23 C -0.13 -2.16 5.75 30.71 0.18 -1.99 16 24 C -0.15 -2.18 6.14 30.68 0.19 -1.99 16 25 C 0.04 0.75 6.48 72.01 0.47 1.21 16 26 O -0.37 -7.13 9.58 -148.98 -1.43 -8.56 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.41 9.03 7.89 -92.71 -0.73 8.30 16 31 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 32 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 33 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 34 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 35 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 36 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.41 7.79 -2.39 -0.02 1.39 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.04 6.72 -2.39 -0.02 1.02 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.04 0.87 6.52 -2.39 -0.02 0.86 16 Total: -1.00 -69.98 366.00 3.28 -66.70 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.27 Total: 32.17 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 4.53 Total: -30.18 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -1.86 Total: -73.53 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.70 Total: -39.06 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -69.98 3.28 -66.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837390847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.239 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds