Wall clock time and date at job start Tue Mar 31 2020 13:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47484 * 2 1 4 4 C 1.52999 * 109.47427 * 239.99371 * 2 1 3 5 5 C 1.50698 * 109.47147 * 295.00292 * 4 2 1 6 6 C 1.38023 * 119.50499 * 124.72734 * 5 4 2 7 7 C 1.39971 * 119.12067 * 179.79561 * 6 5 4 8 8 C 1.48067 * 120.89789 * 180.19669 * 7 6 5 9 9 O 1.21430 * 119.99717 * 353.96650 * 8 7 6 10 10 O 1.34669 * 120.00120 * 173.96341 * 8 7 6 11 11 C 1.45198 * 117.00223 * 185.78204 * 10 8 7 12 12 C 1.52990 * 109.47371 * 181.63390 * 11 10 8 13 13 C 1.50704 * 115.54970 * 184.77076 * 12 11 10 14 14 H 1.07996 * 119.99759 * 143.30338 * 13 12 11 15 15 C 1.37875 * 119.99745 * 323.30422 * 13 12 11 16 16 N 1.31516 * 119.99474 * 168.75299 * 15 13 12 17 17 Si 1.86797 * 120.00451 * 348.74689 * 15 13 12 18 18 H 1.48503 * 109.46938 * 95.31868 * 17 15 13 19 19 H 1.48495 * 109.47442 * 215.31774 * 17 15 13 20 20 H 1.48496 * 109.47122 * 335.32140 * 17 15 13 21 21 C 1.53008 * 117.49882 * 39.10542 * 12 11 10 22 22 C 1.53001 * 117.50069 * 330.44538 * 12 11 10 23 23 C 1.39660 * 118.20649 * 0.46484 * 7 6 5 24 24 C 1.38851 * 118.94312 * 359.75486 * 23 7 6 25 25 O 1.35683 * 119.61976 * 180.02562 * 24 23 7 26 26 N 1.31870 * 119.50921 * 304.99191 * 5 4 2 27 27 H 1.08995 * 109.47132 * 300.00066 * 1 2 3 28 28 H 1.09000 * 109.46864 * 60.00558 * 1 2 3 29 29 H 1.09005 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47588 * 119.99729 * 2 1 3 31 31 H 1.09002 * 109.47337 * 59.99280 * 3 2 1 32 32 H 1.08990 * 109.47621 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46894 * 300.00064 * 3 2 1 34 34 H 1.09004 * 109.46675 * 55.00480 * 4 2 1 35 35 H 1.09001 * 109.47414 * 174.99631 * 4 2 1 36 36 H 1.07997 * 120.44420 * 359.97438 * 6 5 4 37 37 H 1.09003 * 109.47017 * 301.64054 * 11 10 8 38 38 H 1.09004 * 109.46702 * 61.63172 * 11 10 8 39 39 H 0.96994 * 120.00029 * 180.02562 * 16 15 13 40 40 H 1.08998 * 117.49611 * 359.97438 * 21 12 11 41 41 H 1.08992 * 117.49825 * 145.01961 * 21 12 11 42 42 H 1.08996 * 117.49538 * 214.97640 * 22 12 11 43 43 H 1.09004 * 117.49585 * 359.97314 * 22 12 11 44 44 H 1.07997 * 120.52870 * 179.73215 * 23 7 6 45 45 H 0.96698 * 113.99918 * 270.01829 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6413 -2.1734 -1.1887 6 6 0.9239 -2.7253 -2.2307 7 6 0.5615 -4.0758 -2.1682 8 6 -0.2043 -4.7092 -3.2658 9 8 -0.6210 -4.0329 -4.1842 10 8 -0.4385 -6.0352 -3.2456 11 6 -1.0818 -6.6089 -4.4140 12 6 -1.3006 -8.1067 -4.1920 13 6 -1.8604 -8.8633 -5.3690 14 1 -1.5279 -9.8708 -5.5708 15 6 -2.7971 -8.2692 -6.1880 16 7 -3.1219 -8.8320 -7.3314 17 14 -3.6047 -6.6654 -5.6735 18 1 -2.8761 -5.5255 -6.2860 19 1 -5.0173 -6.6533 -6.1314 20 1 -3.5628 -6.5422 -4.1943 21 6 -1.7274 -8.5587 -2.7939 22 6 -0.3065 -8.8397 -3.2890 23 6 0.9369 -4.8084 -1.0399 24 6 1.6540 -4.1737 -0.0346 25 8 2.0262 -4.8725 1.0673 26 7 1.9785 -2.8964 -0.1387 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6054 -0.2618 -2.1369 35 1 3.1263 -0.6444 -1.2951 36 1 0.6483 -2.1239 -3.0843 37 1 -2.0432 -6.1212 -4.5757 38 1 -0.4475 -6.4599 -5.2878 39 1 -3.7806 -8.4139 -7.9078 40 1 -1.8519 -7.7889 -2.0323 41 1 -2.4127 -9.4035 -2.7254 42 1 -0.0576 -9.8692 -3.5461 43 1 0.5037 -8.2548 -2.8535 44 1 0.6732 -5.8519 -0.9507 45 1 1.3777 -4.8509 1.7843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849753125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:11 Heat of formation + Delta-G solvation = -66.137291 kcal Electronic energy + Delta-G solvation = -26688.958627 eV Core-core repulsion = 22866.026406 eV Total energy + Delta-G solvation = -3822.932221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13929 -39.95718 -37.85506 -37.31618 -36.17434 -35.47129 -33.03265 -32.34107 -31.20374 -28.02787 -27.47551 -27.30847 -25.87400 -24.38650 -23.10557 -21.46953 -21.26646 -20.09332 -19.26551 -18.98785 -17.66875 -17.27086 -16.56125 -16.29510 -16.21138 -15.91113 -15.54371 -15.34391 -14.75834 -14.51557 -14.30958 -13.92035 -13.62792 -13.23973 -13.01404 -12.80980 -12.76010 -12.55360 -12.45610 -12.11506 -11.99294 -11.87567 -11.32507 -11.26594 -11.23487 -10.95032 -10.90851 -10.75282 -10.52336 -10.50318 -10.18285 -9.88747 -9.73923 -9.58519 -9.33642 -9.11507 -8.78715 -8.42640 -6.31710 -4.26779 0.32739 0.65721 2.44571 2.69694 3.14384 3.17839 3.25772 3.29366 3.46774 4.07942 4.21055 4.40459 4.56764 4.63122 4.65512 4.67550 4.75586 4.82636 4.99658 5.23140 5.24123 5.28837 5.33940 5.36187 5.45603 5.53861 5.56865 5.60851 5.66871 5.71813 5.79484 5.82069 5.88490 5.96506 6.07309 6.11750 6.13253 6.42593 6.51758 6.58820 6.78392 6.91831 7.15534 7.16308 7.53275 7.55344 7.82389 8.33119 8.73325 9.30104 10.80197 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.003213 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.416079 B = 8713.311993 C = 9720.487481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.066 4.066 5 C 0.153 3.847 6 C -0.123 4.123 7 C -0.049 4.049 8 C 0.499 3.501 9 O -0.496 6.496 10 O -0.342 6.342 11 C 0.087 3.913 12 C 0.004 3.996 13 C -0.483 4.483 14 H 0.087 0.913 15 C 0.078 3.922 16 N -0.882 5.882 17 Si 0.871 3.129 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.259 1.259 21 C -0.199 4.199 22 C -0.177 4.177 23 C -0.136 4.136 24 C 0.309 3.691 25 O -0.476 6.476 26 N -0.480 5.480 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.269 0.731 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.159 0.841 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.835 16.905 16.221 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.104 4.104 5 C 0.015 3.985 6 C -0.143 4.143 7 C -0.058 4.058 8 C 0.342 3.658 9 O -0.385 6.385 10 O -0.258 6.258 11 C 0.015 3.985 12 C 0.003 3.997 13 C -0.520 4.520 14 H 0.105 0.895 15 C -0.126 4.126 16 N -0.517 5.517 17 Si 0.701 3.299 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.185 1.185 21 C -0.237 4.237 22 C -0.215 4.215 23 C -0.158 4.158 24 C 0.130 3.870 25 O -0.283 6.283 26 N -0.200 5.200 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.170 0.830 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.177 0.823 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 9.507 17.250 16.094 25.435 hybrid contribution -1.447 0.376 -0.301 1.525 sum 8.060 17.626 15.793 25.001 Atomic orbital electron populations 1.21868 0.95207 1.01660 1.01845 1.21073 0.95835 0.95902 0.98046 1.21843 1.01053 0.95659 1.01909 1.20715 1.02207 0.87813 0.99637 1.20862 0.93377 0.96153 0.88117 1.22159 0.97915 0.93850 1.00387 1.19505 0.98694 0.93963 0.93673 1.20965 0.77805 0.82054 0.84953 1.90845 1.47741 1.64310 1.35575 1.86495 1.71973 1.21607 1.45745 1.23693 0.96478 0.94290 0.84052 1.19376 1.00692 0.87757 0.91881 1.20291 1.22730 1.01376 1.07572 0.89509 1.25007 0.96185 0.97335 0.94110 1.69886 1.32220 1.40253 1.09360 0.87174 0.79183 0.83990 0.79549 1.19842 1.21590 1.18518 1.23116 0.97519 1.03104 0.99937 1.22751 0.92274 1.00689 1.05756 1.22524 0.96853 1.02766 0.93613 1.18946 0.92492 0.86695 0.88843 1.84817 1.48485 1.69448 1.25580 1.66752 1.20049 1.06914 1.26324 0.92638 0.92500 0.93089 0.89929 0.92542 0.92529 0.92591 0.89670 0.89422 0.82963 0.91416 0.90322 0.92062 0.91080 0.89601 0.89848 0.90286 0.82330 0.74044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.01 37.16 0.33 -0.82 16 2 C -0.09 -0.67 2.84 -90.62 -0.26 -0.93 16 3 C -0.15 -0.88 9.19 37.16 0.34 -0.54 16 4 C -0.07 -0.52 5.08 -27.88 -0.14 -0.67 16 5 C 0.15 1.64 5.16 -82.66 -0.43 1.21 16 6 C -0.12 -1.48 9.27 -39.01 -0.36 -1.84 16 7 C -0.05 -0.69 5.91 -104.69 -0.62 -1.31 16 8 C 0.50 8.91 7.90 34.76 0.27 9.19 16 9 O -0.50 -10.07 16.21 -19.21 -0.31 -10.38 16 10 O -0.34 -6.60 7.86 -40.41 -0.32 -6.92 16 11 C 0.09 1.95 4.24 37.15 0.16 2.11 16 12 C 0.00 0.09 1.82 -155.66 -0.28 -0.19 16 13 C -0.48 -13.21 9.57 -34.44 -0.33 -13.54 16 14 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 15 C 0.08 2.19 5.43 -17.82 -0.10 2.09 16 16 N -0.88 -26.01 13.96 55.43 0.77 -25.24 16 17 Si 0.87 21.59 24.22 -169.99 -4.12 17.47 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -6.22 6.38 56.52 0.36 -5.86 16 21 C -0.20 -4.13 9.66 -26.69 -0.26 -4.39 16 22 C -0.18 -3.58 9.63 -26.69 -0.26 -3.84 16 23 C -0.14 -1.70 9.64 -38.82 -0.37 -2.07 16 24 C 0.31 3.60 7.74 -17.17 -0.13 3.47 16 25 O -0.48 -4.70 13.56 -18.75 -0.25 -4.96 16 26 N -0.48 -5.63 9.77 -9.60 -0.09 -5.73 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.47 7.38 -51.93 -0.38 0.08 16 30 H 0.08 0.71 7.80 -51.92 -0.40 0.31 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.15 1.69 7.63 -52.49 -0.40 1.29 16 37 H 0.07 1.63 2.50 -51.93 -0.13 1.50 16 38 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 1.37 7.81 -51.93 -0.41 0.96 16 41 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 42 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 43 H 0.08 1.45 7.51 -51.93 -0.39 1.06 16 44 H 0.16 1.89 7.72 -52.49 -0.41 1.49 16 45 H 0.40 1.92 9.06 45.56 0.41 2.33 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -31.85 373.18 -7.04 -38.90 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.92 Total: 3.32 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.43 Total: -12.08 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.68 Total: -30.97 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.88 Total: -22.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.12 Total: 17.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.85 -7.04 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849753125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.240 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds