Wall clock time and date at job start Tue Mar 31 2020 12:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35909 * 117.00470 * 2 1 4 4 C 1.38871 * 119.97760 * 359.97438 * 3 2 1 5 5 C 1.38252 * 120.24810 * 179.97438 * 4 3 2 6 6 C 1.37997 * 120.21225 * 0.03855 * 5 4 3 7 7 C 1.39613 * 119.96034 * 359.97438 * 6 5 4 8 8 C 1.47736 * 120.12292 * 179.97438 * 7 6 5 9 9 O 1.21468 * 120.00354 * 174.23734 * 8 7 6 10 10 O 1.34717 * 120.00188 * 354.24755 * 8 7 6 11 11 C 1.45193 * 117.00091 * 179.97438 * 10 8 7 12 12 C 1.53041 * 109.45792 * 270.06024 * 11 10 8 13 13 C 1.53200 * 109.31272 * 178.61618 * 12 11 10 14 14 N 1.46925 * 108.77441 * 54.63842 * 13 12 11 15 15 C 1.36934 * 120.63286 * 126.41782 * 14 13 12 16 16 H 1.08006 * 119.99539 * 331.49782 * 15 14 13 17 17 C 1.38808 * 120.00617 * 151.50211 * 15 14 13 18 18 N 1.31617 * 119.99527 * 345.87588 * 17 15 14 19 19 Si 1.86791 * 120.00256 * 165.86836 * 17 15 14 20 20 H 1.48499 * 109.47462 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46915 * 119.99880 * 19 17 15 22 22 H 1.48499 * 109.47551 * 239.99982 * 19 17 15 23 23 C 1.46928 * 118.73702 * 306.38850 * 14 13 12 24 24 C 1.53046 * 109.46184 * 149.99552 * 11 10 8 25 25 C 1.38441 * 119.98930 * 180.02562 * 3 2 1 26 26 C 1.50699 * 120.10094 * 0.27949 * 25 3 2 27 27 H 1.08998 * 109.47165 * 299.99671 * 1 2 3 28 28 H 1.08996 * 109.47463 * 59.99581 * 1 2 3 29 29 H 1.09004 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.87365 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.89547 * 180.02562 * 5 4 3 32 32 H 1.07998 * 120.01439 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.46215 * 30.02201 * 11 10 8 34 34 H 1.08993 * 109.50145 * 298.56833 * 12 11 10 35 35 H 1.09007 * 109.49677 * 58.66757 * 12 11 10 36 36 H 1.09002 * 109.58348 * 294.85165 * 13 12 11 37 37 H 1.08998 * 109.70327 * 174.49638 * 13 12 11 38 38 H 0.97003 * 120.00309 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.58779 * 293.82515 * 23 14 13 40 40 H 1.08996 * 109.70165 * 173.46563 * 23 14 13 41 41 H 1.08994 * 109.49782 * 301.33664 * 24 11 10 42 42 H 1.09000 * 109.49500 * 61.39938 * 24 11 10 43 43 H 1.09002 * 109.47009 * 263.27086 * 26 25 3 44 44 H 1.08996 * 109.47104 * 23.27294 * 26 25 3 45 45 H 1.09002 * 109.47205 * 143.27633 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9113 3.6101 0.0000 6 6 3.2887 3.6938 0.0003 7 6 4.0580 2.5288 0.0005 8 6 5.5329 2.6142 0.0002 9 8 6.1998 1.6045 0.1061 10 8 6.1382 3.8120 -0.1172 11 6 7.5901 3.8204 -0.1093 12 6 8.0912 3.9670 1.3293 13 6 9.6230 3.9408 1.3374 14 7 10.1185 4.9738 0.4177 15 6 11.0193 5.9131 0.8434 16 1 11.0363 6.2138 1.8807 17 6 11.9104 6.4790 -0.0579 18 7 12.0868 5.9305 -1.2413 19 14 12.8592 8.0190 0.4085 20 1 12.4838 8.4341 1.7840 21 1 14.3164 7.7371 0.3575 22 1 12.5323 9.1096 -0.5448 23 6 9.6296 4.9794 -0.9679 24 6 8.0979 4.9940 -0.9502 25 6 3.4286 1.2830 -0.0005 26 6 4.2512 0.0204 -0.0075 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2110 2.3161 -0.0014 31 1 1.3172 4.5120 0.0000 32 1 3.7712 4.6600 0.0003 33 1 7.9610 2.8855 -0.5293 34 1 7.7414 4.9133 1.7418 35 1 7.7101 3.1433 1.9331 36 1 9.9734 2.9618 1.0104 37 1 9.9886 4.1421 2.3443 38 1 12.7098 6.3257 -1.8711 39 1 9.9805 4.0851 -1.4828 40 1 9.9975 5.8663 -1.4838 41 1 7.7214 4.9014 -1.9688 42 1 7.7475 5.9306 -0.5165 43 1 4.5511 -0.2235 1.0117 44 1 3.6583 -0.7973 -0.4173 45 1 5.1393 0.1687 -0.6218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850896288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:24 Heat of formation + Delta-G solvation = -76.037918 kcal Electronic energy + Delta-G solvation = -26757.930737 eV Core-core repulsion = 22934.569192 eV Total energy + Delta-G solvation = -3823.361545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90580 -39.94829 -37.90399 -37.10240 -35.84495 -32.91322 -32.72512 -30.96567 -30.25206 -29.55660 -27.91792 -27.13540 -25.33334 -23.92743 -22.37895 -22.15092 -21.63939 -20.57535 -19.31272 -18.50463 -17.20229 -16.89790 -16.34548 -16.19129 -15.96322 -15.87049 -15.61065 -14.85131 -14.22106 -14.03015 -13.76697 -13.60181 -13.52636 -13.22925 -13.00534 -12.76089 -12.55916 -12.46702 -12.31406 -12.28915 -11.94787 -11.53826 -11.44943 -11.22351 -11.18630 -10.99242 -10.76265 -10.69025 -10.38628 -10.15283 -10.05345 -9.85075 -9.64852 -9.42890 -9.18799 -8.50632 -8.43248 -6.71865 -5.81193 -3.25660 0.50484 1.12018 2.56593 2.63496 3.14908 3.36722 3.44289 3.46589 3.54376 4.41100 4.47469 4.47870 4.70636 4.73700 4.75818 4.88246 5.02267 5.10241 5.21593 5.27588 5.38447 5.43162 5.46739 5.53785 5.65570 5.75105 5.77961 5.94731 6.00373 6.09195 6.12434 6.22464 6.24383 6.29571 6.43807 6.51289 6.53682 6.61078 6.73656 6.87812 6.97642 7.01509 7.30844 7.61907 7.77375 7.97392 8.42668 9.18341 9.80418 10.37007 11.27724 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035780 B = 0.002460 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.367219 B =11378.095291 C =11710.234015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.109 3.891 4 C -0.175 4.175 5 C -0.102 4.102 6 C -0.093 4.093 7 C -0.089 4.089 8 C 0.503 3.497 9 O -0.498 6.498 10 O -0.351 6.351 11 C 0.099 3.901 12 C -0.146 4.146 13 C 0.149 3.851 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.067 0.933 17 C 0.001 3.999 18 N -0.905 5.905 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.173 3.827 24 C -0.135 4.135 25 C -0.050 4.050 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.254 0.746 39 H 0.022 0.978 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.545 -8.251 1.240 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.064 3.936 4 C -0.193 4.193 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.090 4.090 8 C 0.348 3.652 9 O -0.388 6.388 10 O -0.268 6.268 11 C 0.046 3.954 12 C -0.185 4.185 13 C 0.022 3.978 14 N -0.316 5.316 15 C -0.381 4.381 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.550 5.550 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.047 3.953 24 C -0.175 4.175 25 C -0.051 4.051 26 C -0.171 4.171 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.081 -8.661 1.153 25.617 hybrid contribution 0.175 0.901 0.189 0.937 sum -23.906 -7.760 1.342 25.170 Atomic orbital electron populations 1.23078 0.78356 1.04094 1.01321 1.86086 1.21235 1.26287 1.88889 1.18559 0.91301 0.84569 0.99140 1.21455 1.00237 0.92308 1.05349 1.20909 0.94341 0.97226 0.99533 1.21439 0.93654 0.98351 0.97691 1.18864 0.90108 0.93374 1.06691 1.20962 0.88554 0.82241 0.73426 1.90779 1.66562 1.36103 1.45309 1.86597 1.25763 1.31863 1.82552 1.22986 0.73333 1.01080 0.98021 1.22468 0.99820 1.01542 0.94718 1.20865 0.89573 0.92258 0.95093 1.44128 1.49051 1.30930 1.07495 1.19250 1.09440 1.14151 0.95214 0.91480 1.25100 0.97288 1.00043 0.97313 1.69991 1.37756 1.39493 1.07770 0.86168 0.79443 0.82931 0.77908 1.20235 1.21688 1.21523 1.20853 0.85709 1.02210 0.86537 1.22474 1.00812 0.96405 0.97769 1.19314 0.90774 0.95398 0.99608 1.20953 0.99693 0.92787 1.03675 0.92609 0.92623 0.88102 0.84999 0.84891 0.84000 0.90206 0.91372 0.92618 0.96014 0.92100 0.93560 0.96026 0.88206 0.92380 0.91479 0.90644 0.91704 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.06 9.43 -19.45 -0.18 -3.24 16 3 C 0.11 1.19 6.65 -39.27 -0.26 0.93 16 4 C -0.17 -1.54 9.03 -39.34 -0.36 -1.90 16 5 C -0.10 -0.92 10.03 -39.66 -0.40 -1.32 16 6 C -0.09 -1.05 9.61 -39.16 -0.38 -1.43 16 7 C -0.09 -1.22 5.87 -105.00 -0.62 -1.83 16 8 C 0.50 8.20 7.80 34.61 0.27 8.47 16 9 O -0.50 -8.96 12.60 -19.24 -0.24 -9.20 16 10 O -0.35 -5.98 9.14 -40.54 -0.37 -6.35 16 11 C 0.10 1.87 2.42 -26.69 -0.06 1.80 16 12 C -0.15 -2.76 5.72 -26.61 -0.15 -2.91 16 13 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 14 N -0.59 -14.97 3.00 -172.32 -0.52 -15.48 16 15 C -0.25 -6.86 9.60 -15.06 -0.14 -7.01 16 16 H 0.07 1.80 7.87 -52.48 -0.41 1.39 16 17 C 0.00 0.02 4.99 -17.43 -0.09 -0.06 16 18 N -0.91 -26.08 11.04 55.49 0.61 -25.46 16 19 Si 0.91 21.57 29.58 -169.99 -5.03 16.55 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.17 4.13 5.29 -3.71 -0.02 4.11 16 24 C -0.14 -2.66 5.74 -26.61 -0.15 -2.81 16 25 C -0.05 -0.64 5.93 -104.05 -0.62 -1.26 16 26 C -0.12 -1.47 8.58 36.01 0.31 -1.16 16 27 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 28 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.13 0.78 6.28 -52.49 -0.33 0.45 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.14 1.52 7.62 -52.49 -0.40 1.12 16 33 H 0.08 1.58 7.16 -51.93 -0.37 1.21 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 2.63 5.99 -51.93 -0.31 2.32 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.74 7.34 -51.93 -0.38 0.36 16 45 H 0.09 1.35 5.86 -51.93 -0.30 1.04 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -31.10 362.55 -8.62 -39.72 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.66 Total: 0.07 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.70 Total: -2.05 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.10 Total: -40.95 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.80 Total: -18.80 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.10 -8.62 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.321 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds