Wall clock time and date at job start Tue Mar 31 2020 12:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35909 * 117.00470 * 2 1 4 4 C 1.38871 * 119.97760 * 359.97438 * 3 2 1 5 5 C 1.38252 * 120.24810 * 179.97438 * 4 3 2 6 6 C 1.37997 * 120.21225 * 0.03855 * 5 4 3 7 7 C 1.39613 * 119.96034 * 359.97438 * 6 5 4 8 8 C 1.47736 * 120.12292 * 179.97438 * 7 6 5 9 9 O 1.21468 * 120.00354 * 174.23734 * 8 7 6 10 10 O 1.34717 * 120.00188 * 354.24755 * 8 7 6 11 11 C 1.45193 * 117.00091 * 179.97438 * 10 8 7 12 12 C 1.53041 * 109.45792 * 270.06024 * 11 10 8 13 13 C 1.53200 * 109.31272 * 178.61618 * 12 11 10 14 14 N 1.46925 * 108.77441 * 54.63842 * 13 12 11 15 15 C 1.36934 * 120.63286 * 126.41782 * 14 13 12 16 16 H 1.08006 * 119.99539 * 331.49782 * 15 14 13 17 17 C 1.38808 * 120.00617 * 151.50211 * 15 14 13 18 18 N 1.31617 * 119.99527 * 345.87588 * 17 15 14 19 19 Si 1.86791 * 120.00256 * 165.86836 * 17 15 14 20 20 H 1.48499 * 109.47462 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46915 * 119.99880 * 19 17 15 22 22 H 1.48499 * 109.47551 * 239.99982 * 19 17 15 23 23 C 1.46928 * 118.73702 * 306.38850 * 14 13 12 24 24 C 1.53046 * 109.46184 * 149.99552 * 11 10 8 25 25 C 1.38441 * 119.98930 * 180.02562 * 3 2 1 26 26 C 1.50699 * 120.10094 * 0.27949 * 25 3 2 27 27 H 1.08998 * 109.47165 * 299.99671 * 1 2 3 28 28 H 1.08996 * 109.47463 * 59.99581 * 1 2 3 29 29 H 1.09004 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.87365 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.89547 * 180.02562 * 5 4 3 32 32 H 1.07998 * 120.01439 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.46215 * 30.02201 * 11 10 8 34 34 H 1.08993 * 109.50145 * 298.56833 * 12 11 10 35 35 H 1.09007 * 109.49677 * 58.66757 * 12 11 10 36 36 H 1.09002 * 109.58348 * 294.85165 * 13 12 11 37 37 H 1.08998 * 109.70327 * 174.49638 * 13 12 11 38 38 H 0.97003 * 120.00309 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.58779 * 293.82515 * 23 14 13 40 40 H 1.08996 * 109.70165 * 173.46563 * 23 14 13 41 41 H 1.08994 * 109.49782 * 301.33664 * 24 11 10 42 42 H 1.09000 * 109.49500 * 61.39938 * 24 11 10 43 43 H 1.09002 * 109.47009 * 263.27086 * 26 25 3 44 44 H 1.08996 * 109.47104 * 23.27294 * 26 25 3 45 45 H 1.09002 * 109.47205 * 143.27633 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2893 2.3753 -0.0005 5 6 1.9113 3.6101 0.0000 6 6 3.2887 3.6938 0.0003 7 6 4.0580 2.5288 0.0005 8 6 5.5329 2.6142 0.0002 9 8 6.1998 1.6045 0.1061 10 8 6.1382 3.8120 -0.1172 11 6 7.5901 3.8204 -0.1093 12 6 8.0912 3.9670 1.3293 13 6 9.6230 3.9408 1.3374 14 7 10.1185 4.9738 0.4177 15 6 11.0193 5.9131 0.8434 16 1 11.0363 6.2138 1.8807 17 6 11.9104 6.4790 -0.0579 18 7 12.0868 5.9305 -1.2413 19 14 12.8592 8.0190 0.4085 20 1 12.4838 8.4341 1.7840 21 1 14.3164 7.7371 0.3575 22 1 12.5323 9.1096 -0.5448 23 6 9.6296 4.9794 -0.9679 24 6 8.0979 4.9940 -0.9502 25 6 3.4286 1.2830 -0.0005 26 6 4.2512 0.0204 -0.0075 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2110 2.3161 -0.0014 31 1 1.3172 4.5120 0.0000 32 1 3.7712 4.6600 0.0003 33 1 7.9610 2.8855 -0.5293 34 1 7.7414 4.9133 1.7418 35 1 7.7101 3.1433 1.9331 36 1 9.9734 2.9618 1.0104 37 1 9.9886 4.1421 2.3443 38 1 12.7098 6.3257 -1.8711 39 1 9.9805 4.0851 -1.4828 40 1 9.9975 5.8663 -1.4838 41 1 7.7214 4.9014 -1.9688 42 1 7.7475 5.9306 -0.5165 43 1 4.5511 -0.2235 1.0117 44 1 3.6583 -0.7973 -0.4173 45 1 5.1393 0.1687 -0.6218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850896288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:23 Heat of formation + Delta-G solvation = -92.406952 kcal Electronic energy + Delta-G solvation = -26758.640551 eV Core-core repulsion = 22934.569192 eV Total energy + Delta-G solvation = -3824.071359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.97220 -40.96505 -39.23908 -38.20081 -37.33267 -34.61687 -33.77715 -32.31804 -31.71009 -31.25456 -28.50234 -27.98863 -27.13754 -25.16582 -23.99264 -23.63428 -22.68103 -21.72320 -21.02716 -19.47679 -18.87712 -18.23799 -17.30967 -17.16542 -17.02667 -16.78910 -16.65940 -16.57763 -15.75871 -15.41185 -15.04206 -14.88923 -14.85679 -14.59649 -14.22884 -14.17623 -14.10595 -13.39159 -13.31335 -13.23481 -13.09014 -13.04183 -12.73965 -12.66463 -12.58979 -12.44366 -12.14442 -12.04012 -11.95906 -11.92830 -11.85003 -11.48747 -11.21637 -11.00585 -10.58013 -10.04658 -9.21357 -8.75607 -7.89853 -5.37939 -0.41900 0.32346 1.44908 1.47013 1.49464 1.51217 1.60416 2.38296 2.50376 2.66298 3.26740 3.46811 3.60451 3.68517 3.78337 3.84251 3.94425 3.99381 4.14553 4.17991 4.33699 4.38861 4.43683 4.44407 4.55614 4.63327 4.71898 4.74183 4.75907 4.80197 4.83099 4.86843 4.95026 5.03439 5.15365 5.18356 5.21774 5.32025 5.33365 5.41331 5.49420 5.61716 5.65033 5.70628 6.35979 6.36825 6.67594 7.11169 7.78869 8.32067 9.17748 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035780 B = 0.002460 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.367219 B =11378.095291 C =11710.234015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.106 3.894 4 C -0.161 4.161 5 C -0.091 4.091 6 C -0.099 4.099 7 C -0.111 4.111 8 C 0.500 3.500 9 O -0.523 6.523 10 O -0.346 6.346 11 C 0.107 3.893 12 C -0.132 4.132 13 C 0.147 3.853 14 N -0.611 5.611 15 C -0.263 4.263 16 H 0.070 0.930 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.293 1.293 22 H -0.288 1.288 23 C 0.180 3.820 24 C -0.121 4.121 25 C -0.074 4.074 26 C -0.108 4.108 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.014 0.986 37 H 0.067 0.933 38 H 0.252 0.748 39 H -0.001 1.001 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.920 -7.390 1.989 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.061 3.939 4 C -0.179 4.179 5 C -0.109 4.109 6 C -0.118 4.118 7 C -0.112 4.112 8 C 0.347 3.653 9 O -0.414 6.414 10 O -0.263 6.263 11 C 0.052 3.948 12 C -0.171 4.171 13 C 0.021 3.979 14 N -0.334 5.334 15 C -0.393 4.393 16 H 0.088 0.912 17 C -0.246 4.246 18 N -0.583 5.583 19 Si 0.801 3.199 20 H -0.190 1.190 21 H -0.220 1.220 22 H -0.214 1.214 23 C 0.054 3.946 24 C -0.160 4.160 25 C -0.076 4.076 26 C -0.164 4.164 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.186 0.814 31 H 0.187 0.813 32 H 0.163 0.837 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.018 0.982 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.495 -7.814 1.919 28.648 hybrid contribution 1.068 0.520 -0.039 1.188 sum -26.427 -7.294 1.880 27.480 Atomic orbital electron populations 1.23424 0.75962 1.05818 1.02674 1.86069 1.23712 1.25974 1.88677 1.18639 0.90693 0.85860 0.98704 1.21886 1.01969 0.91270 1.02821 1.21318 0.93411 0.98765 0.97402 1.21596 0.94853 0.97546 0.97768 1.18787 0.88231 0.94776 1.09443 1.21571 0.89804 0.81422 0.72503 1.90773 1.67354 1.36657 1.46621 1.86582 1.24226 1.32568 1.82901 1.22659 0.74705 0.99832 0.97580 1.22272 0.97567 1.02219 0.95076 1.20955 0.91382 0.90938 0.94624 1.44380 1.49219 1.31610 1.08220 1.19571 1.09658 1.14578 0.95455 0.91209 1.25884 0.98498 1.02894 0.97364 1.70151 1.38555 1.40862 1.08751 0.85127 0.77589 0.79214 0.78014 1.19006 1.22000 1.21421 1.20621 0.88420 0.99795 0.85795 1.22186 0.97618 0.96939 0.99222 1.19375 0.92095 0.94793 1.01288 1.20804 0.99091 0.93733 1.02757 0.91163 0.91167 0.86476 0.81377 0.81305 0.83658 0.91657 0.90956 0.91364 0.96811 0.91478 0.93899 0.98247 0.90898 0.90563 0.91178 0.91449 0.90743 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.77 9.43 -92.53 -0.87 -6.64 16 3 C 0.11 2.09 6.65 22.47 0.15 2.24 16 4 C -0.16 -2.20 9.03 22.42 0.20 -2.00 16 5 C -0.09 -1.28 10.03 22.22 0.22 -1.06 16 6 C -0.10 -2.05 9.61 22.54 0.22 -1.83 16 7 C -0.11 -2.98 5.87 -20.11 -0.12 -3.10 16 8 C 0.50 16.48 7.80 70.33 0.55 17.02 16 9 O -0.52 -19.49 12.60 19.94 0.25 -19.24 16 10 O -0.35 -11.67 9.14 -56.27 -0.51 -12.19 16 11 C 0.11 4.02 2.42 30.62 0.07 4.09 16 12 C -0.13 -4.96 5.72 30.67 0.18 -4.78 16 13 C 0.15 6.42 6.52 86.37 0.56 6.98 16 14 N -0.61 -31.39 3.00 -699.09 -2.09 -33.49 16 15 C -0.26 -14.50 9.60 84.03 0.81 -13.70 16 16 H 0.07 3.74 7.87 -2.91 -0.02 3.72 16 17 C -0.05 -2.86 4.99 84.86 0.42 -2.44 16 18 N -0.94 -55.39 11.04 21.65 0.24 -55.15 16 19 Si 0.97 44.73 29.58 68.60 2.03 46.76 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 C 0.18 8.85 5.29 86.36 0.46 9.31 16 24 C -0.12 -4.75 5.74 30.67 0.18 -4.58 16 25 C -0.07 -1.89 5.93 -19.49 -0.12 -2.01 16 26 C -0.11 -2.85 8.58 71.24 0.61 -2.24 16 27 H 0.07 0.32 7.66 -2.39 -0.02 0.31 16 28 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 29 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.17 1.05 6.28 -2.91 -0.02 1.03 16 31 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.15 2.82 7.62 -2.91 -0.02 2.80 16 33 H 0.07 2.67 7.16 -2.39 -0.02 2.65 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 38 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.07 3.99 5.99 -2.39 -0.01 3.97 16 41 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 1.73 7.34 -2.39 -0.02 1.72 16 45 H 0.07 2.19 5.86 -2.39 -0.01 2.18 16 Total: -1.00 -69.03 362.55 5.53 -63.50 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.99 Total: 13.30 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 5.50 Total: 3.15 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -1.86 Total: -88.64 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.14 Total: -38.07 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.03 5.53 -63.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.908 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds