Wall clock time and date at job start Tue Mar 31 2020 12:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00160 * 2 1 4 4 C 1.52998 * 109.47576 * 270.00542 * 3 2 1 5 5 C 1.52993 * 112.99808 * 50.33240 * 4 3 2 6 6 C 1.54040 * 113.81448 * 278.50534 * 4 3 2 7 7 O 1.44450 * 85.42377 * 223.23460 * 6 4 3 8 8 C 1.44184 * 93.37794 * 24.09123 * 7 6 4 9 9 C 1.34783 * 119.99908 * 180.02562 * 2 1 3 10 10 O 1.21281 * 119.99796 * 179.97438 * 9 2 1 11 11 C 1.50697 * 119.99878 * 359.97438 * 9 2 1 12 12 C 1.50699 * 109.46970 * 180.02562 * 11 9 2 13 13 C 1.38328 * 119.96224 * 270.02075 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.07187 * 359.77180 * 14 13 12 16 16 C 1.38861 * 119.92847 * 0.50048 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.74703 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99515 * 12 11 9 27 27 H 1.09002 * 109.46716 * 269.99652 * 1 2 3 28 28 H 1.08995 * 109.46709 * 29.99430 * 1 2 3 29 29 H 1.08993 * 109.46974 * 149.99507 * 1 2 3 30 30 H 1.09001 * 109.47044 * 30.00590 * 3 2 1 31 31 H 1.09005 * 109.47455 * 149.99973 * 3 2 1 32 32 H 1.09002 * 109.47440 * 60.00510 * 5 4 3 33 33 H 1.09003 * 109.46797 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47040 * 299.99610 * 5 4 3 35 35 H 1.09001 * 113.86724 * 337.34034 * 6 4 3 36 36 H 1.08997 * 113.86025 * 109.04964 * 6 4 3 37 37 H 1.09005 * 113.86009 * 221.76338 * 8 7 6 38 38 H 1.08994 * 113.97901 * 90.07668 * 8 7 6 39 39 H 1.08996 * 109.47386 * 59.99804 * 11 9 2 40 40 H 1.08997 * 109.47038 * 299.99640 * 11 9 2 41 41 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 42 42 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 43 43 H 1.08001 * 120.03711 * 180.27572 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 1.1895 1.6912 -2.3056 6 6 3.6649 1.0230 -2.0985 7 8 3.9870 2.3357 -2.6080 8 6 3.2660 3.0133 -1.5593 9 6 2.1389 -1.1673 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 -0.0005 12 6 2.3647 -3.6178 -0.0005 13 6 2.8139 -4.1426 -1.1989 14 6 3.7129 -5.1933 -1.2031 15 6 4.1687 -5.7189 -0.0099 16 6 3.7152 -5.1980 1.1948 17 8 4.1574 -5.7159 2.3691 18 6 4.9407 -6.8110 2.2989 19 1 5.2563 -7.1884 1.3375 20 6 5.3412 -7.4526 3.4610 21 7 6.1052 -8.5214 3.3924 22 14 4.7949 -6.8001 5.1238 23 1 3.5109 -7.4391 5.5089 24 1 5.8289 -7.1137 6.1426 25 1 4.6107 -5.3289 5.0422 26 6 2.8129 -4.1419 1.1956 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3632 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1384 0.5138 32 1 0.4474 2.3661 -1.8790 33 1 1.4358 2.0141 -3.3172 34 1 0.7855 0.6793 -2.3359 35 1 4.3922 0.6363 -1.3846 36 1 3.3981 0.3019 -2.8710 37 1 2.6836 3.8673 -1.9053 38 1 3.8695 3.2368 -0.6797 39 1 0.7584 -2.5299 -0.8902 40 1 0.7592 -2.5302 0.8897 41 1 2.4619 -3.7309 -2.1333 42 1 4.0622 -5.6006 -2.1403 43 1 4.8742 -6.5366 -0.0138 44 1 6.3856 -8.9701 4.2053 45 1 2.4615 -3.7320 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862762464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:17 Heat of formation + Delta-G solvation = -42.000703 kcal Electronic energy + Delta-G solvation = -26844.624766 eV Core-core repulsion = 23022.739185 eV Total energy + Delta-G solvation = -3821.885580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13986 -39.79683 -38.90965 -36.72464 -35.79985 -32.85048 -32.35205 -31.77043 -29.44543 -28.53068 -27.37038 -26.81171 -26.14333 -25.29381 -24.78792 -21.78483 -20.94455 -19.50553 -18.92360 -17.68716 -17.19145 -17.08107 -16.67297 -16.45998 -16.13059 -15.51779 -15.26662 -15.10815 -14.54156 -14.09234 -13.90713 -13.77507 -13.58155 -13.40130 -13.35525 -13.07490 -12.81515 -12.51481 -12.45032 -12.38170 -12.27566 -12.12965 -11.83150 -11.61201 -11.28674 -11.03461 -10.83357 -10.78193 -10.75914 -10.68158 -10.13430 -9.94808 -9.68797 -9.35790 -8.83996 -8.79224 -8.11601 -7.32520 -6.37795 -4.04395 2.03086 2.31756 2.64899 2.84340 3.24241 3.27169 3.43072 3.50079 3.87790 4.26906 4.38792 4.43932 4.65432 4.71134 4.74320 4.78972 4.88578 5.02482 5.08599 5.11511 5.16482 5.17997 5.23442 5.33070 5.35409 5.46835 5.47845 5.51583 5.58316 5.61693 5.71014 5.86156 5.87525 5.90609 5.99675 6.14898 6.27485 6.29686 6.55780 6.81734 7.12742 7.19878 7.24225 7.35289 7.64046 7.84539 8.08078 8.18338 8.97826 9.61035 10.70156 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.002822 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.395192 B = 9918.223932 C =10072.160079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.622 5.622 3 C 0.124 3.876 4 C -0.148 4.148 5 C -0.125 4.125 6 C 0.051 3.949 7 O -0.385 6.385 8 C 0.046 3.954 9 C 0.514 3.486 10 O -0.514 6.514 11 C -0.092 4.092 12 C -0.035 4.035 13 C -0.188 4.188 14 C -0.076 4.076 15 C -0.217 4.217 16 C 0.161 3.839 17 O -0.219 6.219 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.174 4.174 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.466 20.842 -8.806 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.357 5.357 3 C 0.001 3.999 4 C -0.150 4.150 5 C -0.182 4.182 6 C -0.025 4.025 7 O -0.303 6.303 8 C -0.031 4.031 9 C 0.303 3.697 10 O -0.388 6.388 11 C -0.132 4.132 12 C -0.036 4.036 13 C -0.207 4.207 14 C -0.094 4.094 15 C -0.236 4.236 16 C 0.109 3.891 17 O -0.125 6.125 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.194 4.194 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.565 20.803 -8.654 26.300 hybrid contribution -0.265 0.013 0.809 0.852 sum -13.830 20.816 -7.845 26.194 Atomic orbital electron populations 1.21911 0.79611 1.03358 1.02010 1.47841 1.06803 1.05708 1.75349 1.21481 0.98383 0.85076 0.94950 1.24119 0.97366 0.96355 0.97114 1.21577 0.95142 1.02317 0.99179 1.24159 0.94335 0.86423 0.97581 1.89708 1.76750 1.18648 1.45226 1.23947 0.92489 0.95324 0.91372 1.20786 0.88317 0.84914 0.75720 1.90741 1.13756 1.86912 1.47370 1.20618 0.97772 0.90462 1.04321 1.18664 0.97106 0.94779 0.93055 1.20396 1.03487 1.00698 0.96072 1.20733 0.96076 0.95581 0.97005 1.21294 1.05632 1.04803 0.91905 1.19007 0.91826 0.92416 0.85864 1.83566 1.60323 1.42003 1.26595 1.20765 1.26595 1.02125 0.96884 0.87660 1.24451 0.95716 0.94794 0.99046 1.69647 1.34145 1.18164 1.30041 0.86190 0.78405 0.80592 0.81775 1.19922 1.20812 1.18390 1.19924 1.02291 0.99889 0.97263 0.92528 0.90928 0.90724 0.90335 0.89334 0.92106 0.91929 0.91655 0.88792 0.89662 0.89294 0.90119 0.88438 0.88379 0.87838 0.87205 0.85015 0.91117 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 9.11 59.85 0.55 0.95 16 2 N -0.62 -5.69 2.44 -181.57 -0.44 -6.14 16 3 C 0.12 1.06 4.96 -4.05 -0.02 1.04 16 4 C -0.15 -1.25 1.20 -153.43 -0.18 -1.44 16 5 C -0.13 -0.85 7.67 37.15 0.29 -0.57 16 6 C 0.05 0.60 7.73 37.64 0.29 0.89 16 7 O -0.38 -4.66 12.38 -35.23 -0.44 -5.10 16 8 C 0.05 0.38 8.37 37.64 0.31 0.70 16 9 C 0.51 6.69 7.64 -10.98 -0.08 6.61 16 10 O -0.51 -8.94 14.22 5.56 0.08 -8.86 16 11 C -0.09 -1.11 4.38 -29.04 -0.13 -1.24 16 12 C -0.04 -0.61 4.37 -104.65 -0.46 -1.06 16 13 C -0.19 -3.23 9.70 -39.53 -0.38 -3.61 16 14 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 15 C -0.22 -4.86 9.17 -39.39 -0.36 -5.22 16 16 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 17 O -0.22 -5.96 8.59 0.05 0.00 -5.96 16 18 C -0.39 -11.18 9.95 30.89 0.31 -10.87 16 19 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 21 N -0.88 -25.89 13.96 55.48 0.77 -25.12 16 22 Si 0.90 22.06 28.62 -169.99 -4.86 17.19 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.40 7.11 56.52 0.40 -5.99 16 26 C -0.17 -3.57 9.64 -39.40 -0.38 -3.95 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.28 6.36 -51.93 -0.33 -0.05 16 29 H 0.07 0.35 6.44 -51.93 -0.33 0.01 16 30 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.09 0.94 7.26 -51.93 -0.38 0.57 16 32 H 0.06 0.31 7.73 -51.93 -0.40 -0.10 16 33 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.06 0.45 6.71 -51.93 -0.35 0.11 16 35 H 0.09 1.26 7.22 -51.93 -0.38 0.88 16 36 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.10 0.90 7.34 -51.93 -0.38 0.52 16 40 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.13 3.08 5.64 -52.49 -0.30 2.78 16 44 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -33.88 366.87 -6.84 -40.72 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.47 Total: 2.06 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.01 Total: -14.33 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.33 Total: -31.25 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.36 Total: -19.92 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.88 -6.84 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862762464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.278 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds