Wall clock time and date at job start Tue Mar 31 2020 12:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00160 * 2 1 4 4 C 1.52998 * 109.47576 * 270.00542 * 3 2 1 5 5 C 1.52993 * 112.99808 * 50.33240 * 4 3 2 6 6 C 1.54040 * 113.81448 * 278.50534 * 4 3 2 7 7 O 1.44450 * 85.42377 * 223.23460 * 6 4 3 8 8 C 1.44184 * 93.37794 * 24.09123 * 7 6 4 9 9 C 1.34783 * 119.99908 * 180.02562 * 2 1 3 10 10 O 1.21281 * 119.99796 * 179.97438 * 9 2 1 11 11 C 1.50697 * 119.99878 * 359.97438 * 9 2 1 12 12 C 1.50699 * 109.46970 * 180.02562 * 11 9 2 13 13 C 1.38328 * 119.96224 * 270.02075 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.07187 * 359.77180 * 14 13 12 16 16 C 1.38861 * 119.92847 * 0.50048 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.74703 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99515 * 12 11 9 27 27 H 1.09002 * 109.46716 * 269.99652 * 1 2 3 28 28 H 1.08995 * 109.46709 * 29.99430 * 1 2 3 29 29 H 1.08993 * 109.46974 * 149.99507 * 1 2 3 30 30 H 1.09001 * 109.47044 * 30.00590 * 3 2 1 31 31 H 1.09005 * 109.47455 * 149.99973 * 3 2 1 32 32 H 1.09002 * 109.47440 * 60.00510 * 5 4 3 33 33 H 1.09003 * 109.46797 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47040 * 299.99610 * 5 4 3 35 35 H 1.09001 * 113.86724 * 337.34034 * 6 4 3 36 36 H 1.08997 * 113.86025 * 109.04964 * 6 4 3 37 37 H 1.09005 * 113.86009 * 221.76338 * 8 7 6 38 38 H 1.08994 * 113.97901 * 90.07668 * 8 7 6 39 39 H 1.08996 * 109.47386 * 59.99804 * 11 9 2 40 40 H 1.08997 * 109.47038 * 299.99640 * 11 9 2 41 41 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 42 42 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 43 43 H 1.08001 * 120.03711 * 180.27572 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 1.1895 1.6912 -2.3056 6 6 3.6649 1.0230 -2.0985 7 8 3.9870 2.3357 -2.6080 8 6 3.2660 3.0133 -1.5593 9 6 2.1389 -1.1673 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 -0.0005 12 6 2.3647 -3.6178 -0.0005 13 6 2.8139 -4.1426 -1.1989 14 6 3.7129 -5.1933 -1.2031 15 6 4.1687 -5.7189 -0.0099 16 6 3.7152 -5.1980 1.1948 17 8 4.1574 -5.7159 2.3691 18 6 4.9407 -6.8110 2.2989 19 1 5.2563 -7.1884 1.3375 20 6 5.3412 -7.4526 3.4610 21 7 6.1052 -8.5214 3.3924 22 14 4.7949 -6.8001 5.1238 23 1 3.5109 -7.4391 5.5089 24 1 5.8289 -7.1137 6.1426 25 1 4.6107 -5.3289 5.0422 26 6 2.8129 -4.1419 1.1956 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3632 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1384 0.5138 32 1 0.4474 2.3661 -1.8790 33 1 1.4358 2.0141 -3.3172 34 1 0.7855 0.6793 -2.3359 35 1 4.3922 0.6363 -1.3846 36 1 3.3981 0.3019 -2.8710 37 1 2.6836 3.8673 -1.9053 38 1 3.8695 3.2368 -0.6797 39 1 0.7584 -2.5299 -0.8902 40 1 0.7592 -2.5302 0.8897 41 1 2.4619 -3.7309 -2.1333 42 1 4.0622 -5.6006 -2.1403 43 1 4.8742 -6.5366 -0.0138 44 1 6.3856 -8.9701 4.2053 45 1 2.4615 -3.7320 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862762464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:16 Heat of formation + Delta-G solvation = -64.469705 kcal Electronic energy + Delta-G solvation = -26845.599095 eV Core-core repulsion = 23022.739185 eV Total energy + Delta-G solvation = -3822.859909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.93032 -41.05715 -40.33463 -38.34567 -36.69863 -34.49460 -33.84136 -32.83458 -31.08597 -29.27684 -28.42937 -27.56171 -27.22549 -26.77117 -25.78609 -23.35637 -22.51266 -20.51300 -19.70504 -19.58764 -18.80906 -18.00032 -17.44786 -17.31639 -16.91112 -16.86855 -16.65064 -16.36381 -15.88942 -15.67934 -15.49718 -15.07165 -14.64625 -14.41504 -14.29113 -14.20587 -14.03675 -13.95405 -13.67709 -13.27035 -13.03438 -12.92843 -12.88269 -12.82038 -12.53332 -12.45411 -12.34263 -12.32744 -11.93794 -11.71998 -11.48716 -11.31589 -10.94061 -10.85803 -10.59967 -9.66129 -9.52528 -9.06597 -8.51137 -6.23970 0.48902 0.69955 1.28784 1.33588 1.50288 1.71544 2.06819 2.27092 2.74825 2.77354 3.04647 3.10251 3.20189 3.73362 3.78727 3.94615 4.05400 4.07394 4.13461 4.27588 4.38370 4.42272 4.45632 4.48607 4.53943 4.57143 4.63264 4.68915 4.70033 4.82365 4.87745 4.94197 4.95372 4.99020 5.06709 5.15098 5.19516 5.24580 5.36795 5.38871 5.61992 5.64711 5.72582 5.76281 5.90992 6.23986 6.44143 6.83191 7.28752 7.58228 8.60884 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.002822 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.395192 B = 9918.223932 C =10072.160079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.611 5.611 3 C 0.123 3.877 4 C -0.131 4.131 5 C -0.121 4.121 6 C 0.042 3.958 7 O -0.412 6.412 8 C 0.044 3.956 9 C 0.510 3.490 10 O -0.572 6.572 11 C -0.089 4.089 12 C -0.026 4.026 13 C -0.170 4.170 14 C -0.078 4.078 15 C -0.241 4.241 16 C 0.119 3.881 17 O -0.247 6.247 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.972 3.028 23 H -0.261 1.261 24 H -0.266 1.266 25 H -0.267 1.267 26 C -0.181 4.181 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.285 0.715 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.556 24.039 -9.531 31.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.343 5.343 3 C 0.000 4.000 4 C -0.132 4.132 5 C -0.178 4.178 6 C -0.035 4.035 7 O -0.331 6.331 8 C -0.033 4.033 9 C 0.299 3.701 10 O -0.450 6.450 11 C -0.128 4.128 12 C -0.027 4.027 13 C -0.188 4.188 14 C -0.096 4.096 15 C -0.261 4.261 16 C 0.070 3.930 17 O -0.155 6.155 18 C -0.476 4.476 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.566 5.566 22 Si 0.794 3.206 23 H -0.186 1.186 24 H -0.191 1.191 25 H -0.192 1.192 26 C -0.200 4.200 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.723 24.044 -9.414 31.318 hybrid contribution 0.883 -0.758 0.740 1.379 sum -16.840 23.286 -8.674 30.017 Atomic orbital electron populations 1.22263 0.76696 1.05377 1.03465 1.47855 1.08491 1.04669 1.73322 1.21539 0.97872 0.85600 0.94997 1.23998 0.96978 0.95254 0.97012 1.21591 0.94533 1.03235 0.98444 1.24059 0.95764 0.86401 0.97234 1.89679 1.77624 1.19183 1.46657 1.24199 0.92332 0.95971 0.90758 1.20925 0.87660 0.86181 0.75357 1.90747 1.16140 1.87750 1.50402 1.20734 0.96758 0.87686 1.07647 1.19237 0.96581 0.95222 0.91611 1.20978 1.01148 0.98737 0.97973 1.21099 0.96001 0.95871 0.96661 1.21308 1.06313 1.05109 0.93331 1.19596 0.93728 0.94094 0.85535 1.83503 1.61649 1.42094 1.28260 1.20711 1.27410 1.03194 0.96314 0.90367 1.25291 0.95848 0.95060 1.02690 1.69732 1.35867 1.19651 1.31322 0.85205 0.78790 0.79287 0.77333 1.18551 1.19083 1.19162 1.20258 1.01586 0.98862 0.99282 0.91334 0.88613 0.89165 0.86895 0.92200 0.89287 0.92784 0.91321 0.91656 0.90317 0.86783 0.89678 0.84252 0.85887 0.83589 0.84372 0.87656 0.90549 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 9.11 127.77 1.16 1.49 16 2 N -0.61 -8.81 2.44 -846.76 -2.06 -10.88 16 3 C 0.12 1.75 4.96 86.38 0.43 2.17 16 4 C -0.13 -1.89 1.20 -51.48 -0.06 -1.95 16 5 C -0.12 -1.14 7.67 71.98 0.55 -0.59 16 6 C 0.04 0.97 7.73 72.30 0.56 1.53 16 7 O -0.41 -9.77 12.38 -148.98 -1.84 -11.62 16 8 C 0.04 0.64 8.37 72.30 0.60 1.25 16 9 C 0.51 11.79 7.64 87.66 0.67 12.46 16 10 O -0.57 -19.56 14.22 -3.03 -0.04 -19.60 16 11 C -0.09 -1.75 4.38 29.10 0.13 -1.63 16 12 C -0.03 -0.82 4.37 -19.88 -0.09 -0.91 16 13 C -0.17 -5.35 9.70 22.30 0.22 -5.13 16 14 C -0.08 -2.90 10.04 22.25 0.22 -2.67 16 15 C -0.24 -11.37 9.17 22.39 0.21 -11.17 16 16 C 0.12 5.95 6.65 22.58 0.15 6.10 16 17 O -0.25 -14.17 8.59 -22.74 -0.20 -14.36 16 18 C -0.40 -24.64 9.95 67.92 0.68 -23.96 16 19 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 20 C 0.01 0.55 5.49 84.83 0.47 1.01 16 21 N -0.92 -56.87 13.96 21.61 0.30 -56.57 16 22 Si 0.97 46.91 28.62 68.60 1.96 48.87 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 26 C -0.18 -7.36 9.64 22.39 0.22 -7.14 16 27 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.10 0.12 6.36 -2.39 -0.02 0.10 16 29 H 0.09 0.24 6.44 -2.39 -0.02 0.22 16 30 H 0.11 0.86 8.07 -2.39 -0.02 0.84 16 31 H 0.06 1.24 7.26 -2.38 -0.02 1.22 16 32 H 0.09 0.38 7.73 -2.39 -0.02 0.36 16 33 H 0.05 0.64 8.09 -2.39 -0.02 0.62 16 34 H 0.07 0.62 6.71 -2.39 -0.02 0.61 16 35 H 0.07 1.86 7.22 -2.39 -0.02 1.84 16 36 H 0.08 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.11 1.07 8.10 -2.38 -0.02 1.05 16 38 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 39 H 0.14 1.63 7.34 -2.39 -0.02 1.62 16 40 H 0.12 1.89 8.05 -2.39 -0.02 1.87 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.11 5.43 5.64 -2.91 -0.02 5.41 16 44 H 0.28 16.01 8.31 -92.71 -0.77 15.23 16 45 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -81.87 366.87 5.22 -76.65 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.00 Total: 16.65 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 6.11 Total: -29.14 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -1.76 Total: -67.44 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -2.08 Total: -45.58 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.96 Total: 48.87 kcal Total: -81.87 5.22 -76.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862762464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.175 kcal (2) G-P(sol) polarization free energy of solvation -81.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds