Wall clock time and date at job start Tue Mar 31 2020 12:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.69028 * 2 1 4 4 C 1.53415 * 109.68589 * 120.53460 * 2 1 3 5 5 C 1.53064 * 108.30119 * 55.03576 * 4 2 1 6 6 H 1.09005 * 109.39363 * 288.14928 * 5 4 2 7 7 O 1.42895 * 109.43232 * 168.26457 * 5 4 2 8 8 C 1.50778 * 109.69853 * 48.18962 * 5 4 2 9 9 C 1.38646 * 118.72383 * 162.36367 * 8 5 4 10 10 C 1.38088 * 120.45636 * 179.80289 * 9 8 5 11 11 C 1.38237 * 120.03864 * 0.19768 * 10 9 8 12 12 C 1.38528 * 119.87942 * 359.52210 * 11 10 9 13 13 N 1.40119 * 119.95680 * 180.29838 * 12 11 10 14 14 C 1.34774 * 120.00209 * 24.83584 * 13 12 11 15 15 O 1.21298 * 119.99633 * 5.53524 * 14 13 12 16 16 C 1.50699 * 120.00309 * 185.52778 * 14 13 12 17 17 C 1.53000 * 109.47340 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47340 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99877 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99973 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99980 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46825 * 89.99873 * 22 20 18 24 24 H 1.48489 * 109.47316 * 210.00357 * 22 20 18 25 25 H 1.48502 * 109.46812 * 330.00322 * 22 20 18 26 26 C 1.38167 * 121.40544 * 342.19868 * 8 5 4 27 27 O 1.35912 * 121.84663 * 0.46840 * 26 8 5 28 28 H 1.09006 * 109.46703 * 299.47203 * 1 2 3 29 29 H 1.09001 * 109.47255 * 59.46294 * 1 2 3 30 30 H 1.08993 * 109.47802 * 179.47104 * 1 2 3 31 31 H 1.08998 * 109.47476 * 180.53757 * 3 2 1 32 32 H 1.09003 * 109.47097 * 300.53122 * 3 2 1 33 33 H 1.09000 * 109.47398 * 60.53141 * 3 2 1 34 34 H 1.08998 * 109.69848 * 295.33065 * 4 2 1 35 35 H 1.09004 * 109.69742 * 174.74048 * 4 2 1 36 36 H 0.96708 * 113.99876 * 179.76713 * 7 5 4 37 37 H 1.08006 * 119.77246 * 359.77773 * 9 8 5 38 38 H 1.08002 * 119.97923 * 179.97438 * 10 9 8 39 39 H 1.08000 * 120.06007 * 179.77694 * 11 10 9 40 40 H 0.96999 * 120.00001 * 204.83956 * 13 12 11 41 41 H 1.09001 * 109.47042 * 300.00359 * 16 14 13 42 42 H 1.09003 * 109.46858 * 60.00183 * 16 14 13 43 43 H 1.09001 * 109.47159 * 300.00059 * 17 16 14 44 44 H 1.09005 * 109.46748 * 59.99866 * 17 16 14 45 45 H 0.97003 * 119.99734 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0455 1.4405 0.0000 4 6 2.0468 -0.7339 1.2442 5 6 1.4246 -2.1321 1.2705 6 1 0.3668 -2.0529 1.5218 7 8 2.0883 -2.9294 2.2532 8 6 1.5714 -2.7793 -0.0833 9 6 1.4194 -4.1537 -0.1849 10 6 1.5423 -4.7830 -1.4078 11 6 1.8228 -4.0435 -2.5416 12 6 1.9704 -2.6691 -2.4500 13 7 2.2485 -1.9172 -3.5992 14 6 1.8927 -2.3840 -4.8124 15 8 1.2438 -3.4048 -4.9030 16 6 2.3008 -1.6376 -6.0563 17 6 1.7731 -2.3741 -7.2893 18 6 2.1818 -1.6281 -8.5332 19 1 2.7604 -0.7198 -8.4526 20 6 1.8179 -2.1057 -9.7744 21 7 1.1137 -3.2120 -9.8726 22 14 2.3250 -1.1814 -11.3164 23 1 3.6419 -1.6838 -11.7840 24 1 1.3086 -1.3941 -12.3778 25 1 2.4279 0.2687 -11.0129 26 6 1.8485 -2.0324 -1.2122 27 8 2.0112 -0.6841 -1.1579 28 1 -0.3633 0.5057 0.8948 29 1 -0.3634 0.5222 -0.8851 30 1 -0.3634 -1.0275 -0.0095 31 1 3.1354 1.4364 -0.0096 32 1 1.6763 1.9585 -0.8852 33 1 1.6919 1.9529 0.8947 34 1 1.7572 -0.1859 2.1408 35 1 3.1328 -0.8158 1.1978 36 1 1.7431 -3.8296 2.3280 37 1 1.2038 -4.7361 0.6987 38 1 1.4228 -5.8541 -1.4780 39 1 1.9226 -4.5358 -3.4976 40 1 2.6972 -1.0607 -3.5215 41 1 1.8843 -0.6307 -6.0290 42 1 3.3882 -1.5798 -6.1050 43 1 2.1893 -3.3811 -7.3168 44 1 0.6857 -2.4315 -7.2403 45 1 0.8573 -3.5479 -10.7458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885660037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:02 Heat of formation + Delta-G solvation = -107.914526 kcal Electronic energy + Delta-G solvation = -27063.912425 eV Core-core repulsion = 23239.168607 eV Total energy + Delta-G solvation = -3824.743818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44465 -39.69902 -37.85267 -37.20683 -34.59246 -33.96877 -33.50920 -31.56776 -31.07326 -29.17931 -28.50718 -27.75976 -25.75415 -24.19551 -22.90384 -22.78494 -21.18167 -19.97817 -19.22423 -18.49421 -17.45845 -16.95142 -16.84953 -16.14559 -15.66697 -15.44762 -15.34721 -15.05940 -14.69038 -14.44028 -14.22473 -14.03307 -13.61799 -13.29305 -13.20114 -12.79185 -12.55529 -12.45158 -12.32622 -12.26830 -12.15878 -11.94850 -11.88601 -11.45627 -11.18639 -10.94923 -10.89398 -10.87006 -10.61916 -10.48966 -10.17885 -9.99726 -9.68401 -9.19706 -9.05313 -8.47129 -8.34282 -7.70596 -5.98075 -4.02554 1.22522 1.31927 2.90125 3.05937 3.32603 3.34916 3.39378 3.42327 3.63201 3.90157 4.24206 4.32885 4.45246 4.46738 4.61665 4.71237 4.80113 4.95872 5.05985 5.15704 5.19864 5.31079 5.37129 5.37500 5.39164 5.41843 5.50805 5.61648 5.70813 5.76722 5.87352 5.88386 6.08260 6.15751 6.17887 6.23502 6.47056 6.61033 6.82916 6.89455 7.22312 7.35724 7.71191 7.73712 7.81772 8.03735 8.34873 8.59789 9.05338 9.61179 11.12853 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002804 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.825530 B = 9983.244602 C =10977.176965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 C -0.138 4.138 4 C -0.139 4.139 5 C 0.155 3.845 6 H 0.069 0.931 7 O -0.557 6.557 8 C -0.182 4.182 9 C -0.111 4.111 10 C -0.125 4.125 11 C -0.103 4.103 12 C 0.139 3.861 13 N -0.674 5.674 14 C 0.509 3.491 15 O -0.515 6.515 16 C -0.129 4.129 17 C 0.037 3.963 18 C -0.528 4.528 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.109 3.891 27 O -0.310 6.310 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.379 0.621 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.156 0.844 40 H 0.413 0.587 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 5.136 26.533 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.082 3.918 3 C -0.195 4.195 4 C -0.177 4.177 5 C 0.096 3.904 6 H 0.086 0.914 7 O -0.364 6.364 8 C -0.183 4.183 9 C -0.130 4.130 10 C -0.143 4.143 11 C -0.123 4.123 12 C 0.043 3.957 13 N -0.319 5.319 14 C 0.300 3.700 15 O -0.389 6.389 16 C -0.168 4.168 17 C 0.000 4.000 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.062 3.938 27 O -0.225 6.225 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.227 0.773 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.174 0.826 40 H 0.248 0.752 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.646 4.992 26.174 26.654 hybrid contribution 0.006 0.214 -0.725 0.756 sum 0.651 5.206 25.449 25.984 Atomic orbital electron populations 1.22467 0.94376 1.03401 1.03418 1.21822 0.93950 0.92700 0.83294 1.21777 1.02377 0.92027 1.03331 1.22198 1.02643 0.94156 0.98701 1.20474 0.95728 0.90167 0.83985 0.91354 1.86527 1.63361 1.28060 1.58410 1.20174 1.08459 0.94946 0.94751 1.20625 1.01735 0.92819 0.97845 1.20917 1.01510 1.00080 0.91828 1.21437 0.98898 0.91192 1.00781 1.17434 1.02935 0.91024 0.84267 1.43807 1.59933 1.23540 1.04603 1.21833 0.77924 0.85847 0.84425 1.90627 1.37031 1.24793 1.86470 1.21912 1.02256 1.00304 0.92373 1.18917 0.97148 0.95487 0.88494 1.21200 1.34709 1.09658 0.91042 0.92544 1.25021 0.95121 0.95048 0.99168 1.69995 1.37520 1.21114 1.24163 0.86580 0.78263 0.80141 0.82913 1.20651 1.21216 1.19867 1.18192 1.00938 0.82502 0.92171 1.85960 1.77259 1.16408 1.42838 0.90815 0.91036 0.91640 0.91262 0.90943 0.90305 0.89366 0.89541 0.77270 0.86329 0.85459 0.82638 0.75160 0.89876 0.89736 0.95708 0.95711 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.15 37.16 0.30 -1.20 16 2 C 0.12 1.08 1.13 -90.41 -0.10 0.98 16 3 C -0.14 -0.95 8.88 37.15 0.33 -0.62 16 4 C -0.14 -1.21 4.75 -26.48 -0.13 -1.34 16 5 C 0.16 1.45 2.98 -27.81 -0.08 1.37 16 6 H 0.07 0.56 7.00 -51.93 -0.36 0.19 16 7 O -0.56 -5.11 13.18 -35.23 -0.46 -5.58 16 8 C -0.18 -2.13 5.00 -104.46 -0.52 -2.65 16 9 C -0.11 -1.22 9.26 -39.49 -0.37 -1.58 16 10 C -0.12 -1.58 10.04 -39.64 -0.40 -1.98 16 11 C -0.10 -1.62 8.71 -39.47 -0.34 -1.96 16 12 C 0.14 2.18 6.45 -83.40 -0.54 1.64 16 13 N -0.67 -10.61 5.27 -9.69 -0.05 -10.66 16 14 C 0.51 9.85 7.63 -10.99 -0.08 9.77 16 15 O -0.52 -11.72 13.14 5.54 0.07 -11.65 16 16 C -0.13 -2.58 5.64 -27.88 -0.16 -2.74 16 17 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 18 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 26 C 0.11 1.48 6.03 -39.05 -0.24 1.24 16 27 O -0.31 -3.77 8.98 -19.46 -0.17 -3.95 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.62 5.88 -51.93 -0.31 0.32 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.38 2.12 7.48 45.56 0.34 2.46 16 37 H 0.12 0.89 6.74 -52.48 -0.35 0.53 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.16 2.79 5.78 -52.49 -0.30 2.48 16 40 H 0.41 5.45 8.25 -40.82 -0.34 5.12 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -34.61 362.91 -8.22 -42.83 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.93 Total: 5.26 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.85 Total: -11.78 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.69 Total: -37.17 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.57 Total: -21.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.61 -8.22 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885660037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.088 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds