Wall clock time and date at job start Tue Mar 31 2020 12:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.69028 * 2 1 4 4 C 1.53415 * 109.68589 * 120.53460 * 2 1 3 5 5 C 1.53064 * 108.30119 * 55.03576 * 4 2 1 6 6 H 1.09005 * 109.39363 * 288.14928 * 5 4 2 7 7 O 1.42895 * 109.43232 * 168.26457 * 5 4 2 8 8 C 1.50778 * 109.69853 * 48.18962 * 5 4 2 9 9 C 1.38646 * 118.72383 * 162.36367 * 8 5 4 10 10 C 1.38088 * 120.45636 * 179.80289 * 9 8 5 11 11 C 1.38237 * 120.03864 * 0.19768 * 10 9 8 12 12 C 1.38528 * 119.87942 * 359.52210 * 11 10 9 13 13 N 1.40119 * 119.95680 * 180.29838 * 12 11 10 14 14 C 1.34774 * 120.00209 * 24.83584 * 13 12 11 15 15 O 1.21298 * 119.99633 * 5.53524 * 14 13 12 16 16 C 1.50699 * 120.00309 * 185.52778 * 14 13 12 17 17 C 1.53000 * 109.47340 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47340 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99877 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99973 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99980 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46825 * 89.99873 * 22 20 18 24 24 H 1.48489 * 109.47316 * 210.00357 * 22 20 18 25 25 H 1.48502 * 109.46812 * 330.00322 * 22 20 18 26 26 C 1.38167 * 121.40544 * 342.19868 * 8 5 4 27 27 O 1.35912 * 121.84663 * 0.46840 * 26 8 5 28 28 H 1.09006 * 109.46703 * 299.47203 * 1 2 3 29 29 H 1.09001 * 109.47255 * 59.46294 * 1 2 3 30 30 H 1.08993 * 109.47802 * 179.47104 * 1 2 3 31 31 H 1.08998 * 109.47476 * 180.53757 * 3 2 1 32 32 H 1.09003 * 109.47097 * 300.53122 * 3 2 1 33 33 H 1.09000 * 109.47398 * 60.53141 * 3 2 1 34 34 H 1.08998 * 109.69848 * 295.33065 * 4 2 1 35 35 H 1.09004 * 109.69742 * 174.74048 * 4 2 1 36 36 H 0.96708 * 113.99876 * 179.76713 * 7 5 4 37 37 H 1.08006 * 119.77246 * 359.77773 * 9 8 5 38 38 H 1.08002 * 119.97923 * 179.97438 * 10 9 8 39 39 H 1.08000 * 120.06007 * 179.77694 * 11 10 9 40 40 H 0.96999 * 120.00001 * 204.83956 * 13 12 11 41 41 H 1.09001 * 109.47042 * 300.00359 * 16 14 13 42 42 H 1.09003 * 109.46858 * 60.00183 * 16 14 13 43 43 H 1.09001 * 109.47159 * 300.00059 * 17 16 14 44 44 H 1.09005 * 109.46748 * 59.99866 * 17 16 14 45 45 H 0.97003 * 119.99734 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0455 1.4405 0.0000 4 6 2.0468 -0.7339 1.2442 5 6 1.4246 -2.1321 1.2705 6 1 0.3668 -2.0529 1.5218 7 8 2.0883 -2.9294 2.2532 8 6 1.5714 -2.7793 -0.0833 9 6 1.4194 -4.1537 -0.1849 10 6 1.5423 -4.7830 -1.4078 11 6 1.8228 -4.0435 -2.5416 12 6 1.9704 -2.6691 -2.4500 13 7 2.2485 -1.9172 -3.5992 14 6 1.8927 -2.3840 -4.8124 15 8 1.2438 -3.4048 -4.9030 16 6 2.3008 -1.6376 -6.0563 17 6 1.7731 -2.3741 -7.2893 18 6 2.1818 -1.6281 -8.5332 19 1 2.7604 -0.7198 -8.4526 20 6 1.8179 -2.1057 -9.7744 21 7 1.1137 -3.2120 -9.8726 22 14 2.3250 -1.1814 -11.3164 23 1 3.6419 -1.6838 -11.7840 24 1 1.3086 -1.3941 -12.3778 25 1 2.4279 0.2687 -11.0129 26 6 1.8485 -2.0324 -1.2122 27 8 2.0112 -0.6841 -1.1579 28 1 -0.3633 0.5057 0.8948 29 1 -0.3634 0.5222 -0.8851 30 1 -0.3634 -1.0275 -0.0095 31 1 3.1354 1.4364 -0.0096 32 1 1.6763 1.9585 -0.8852 33 1 1.6919 1.9529 0.8947 34 1 1.7572 -0.1859 2.1408 35 1 3.1328 -0.8158 1.1978 36 1 1.7431 -3.8296 2.3280 37 1 1.2038 -4.7361 0.6987 38 1 1.4228 -5.8541 -1.4780 39 1 1.9226 -4.5358 -3.4976 40 1 2.6972 -1.0607 -3.5215 41 1 1.8843 -0.6307 -6.0290 42 1 3.3882 -1.5798 -6.1050 43 1 2.1893 -3.3811 -7.3168 44 1 0.6857 -2.4315 -7.2403 45 1 0.8573 -3.5479 -10.7458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885660037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:01 Heat of formation + Delta-G solvation = -132.690545 kcal Electronic energy + Delta-G solvation = -27064.986793 eV Core-core repulsion = 23239.168607 eV Total energy + Delta-G solvation = -3825.818187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.38015 -41.03749 -38.81130 -38.09232 -35.76521 -35.58194 -34.85701 -33.14871 -32.28576 -30.40694 -29.29673 -28.36179 -27.68501 -25.10257 -24.39079 -23.65283 -22.65196 -21.34506 -20.25499 -19.38086 -18.88468 -18.28695 -17.74202 -17.57420 -16.89375 -16.56387 -16.50360 -16.35284 -16.15490 -15.55503 -15.23223 -15.07568 -14.79875 -14.40652 -14.28687 -14.19866 -13.89613 -13.38415 -13.33204 -13.19797 -13.04818 -12.97674 -12.83732 -12.75776 -12.68852 -12.49194 -12.27905 -11.95300 -11.66908 -11.63646 -11.60982 -11.55455 -11.31645 -11.11994 -10.61152 -10.57457 -9.49436 -8.82089 -8.19148 -6.33086 0.16111 0.30070 1.41761 1.44429 1.55353 1.59595 1.96701 2.15447 2.43018 2.69341 3.14066 3.16673 3.50190 3.57228 3.73926 3.82236 3.87119 4.07937 4.10622 4.21918 4.25518 4.34353 4.40048 4.48716 4.52565 4.65094 4.67808 4.73222 4.80697 4.85283 4.96604 4.98843 5.00909 5.08991 5.18600 5.25369 5.30395 5.43985 5.47987 5.51915 5.60031 5.80779 5.83573 6.15705 6.40254 6.44039 6.74107 6.84469 7.15040 7.37041 8.93500 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002804 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.825530 B = 9983.244602 C =10977.176965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 C -0.136 4.136 4 C -0.137 4.137 5 C 0.158 3.842 6 H 0.089 0.911 7 O -0.566 6.566 8 C -0.184 4.184 9 C -0.097 4.097 10 C -0.132 4.132 11 C -0.127 4.127 12 C 0.104 3.896 13 N -0.656 5.656 14 C 0.511 3.489 15 O -0.560 6.560 16 C -0.116 4.116 17 C 0.044 3.956 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.974 3.026 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.256 1.256 26 C 0.111 3.889 27 O -0.323 6.323 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.394 0.606 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.123 0.877 40 H 0.424 0.576 41 H 0.107 0.893 42 H 0.108 0.892 43 H -0.015 1.015 44 H -0.015 1.015 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 7.289 29.130 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.074 3.926 3 C -0.193 4.193 4 C -0.175 4.175 5 C 0.099 3.901 6 H 0.106 0.894 7 O -0.375 6.375 8 C -0.186 4.186 9 C -0.116 4.116 10 C -0.151 4.151 11 C -0.148 4.148 12 C 0.009 3.991 13 N -0.301 5.301 14 C 0.302 3.698 15 O -0.438 6.438 16 C -0.156 4.156 17 C 0.006 3.994 18 C -0.582 4.582 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.797 3.203 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.179 1.179 26 C 0.063 3.937 27 O -0.238 6.238 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.245 0.755 37 H 0.179 0.821 38 H 0.164 0.836 39 H 0.141 0.859 40 H 0.262 0.738 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.004 0.996 44 H 0.003 0.997 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.207 7.175 28.830 29.734 hybrid contribution -0.180 -0.489 -1.362 1.458 sum 1.028 6.687 27.468 28.289 Atomic orbital electron populations 1.22473 0.93807 1.02817 1.04365 1.22183 0.94477 0.93462 0.82476 1.21828 1.02273 0.90698 1.04466 1.22212 1.01702 0.94147 0.99402 1.20550 0.96887 0.90252 0.82408 0.89396 1.86516 1.63771 1.29312 1.57875 1.20642 1.07028 0.95369 0.95562 1.21097 0.99116 0.92945 0.98439 1.21159 1.01292 1.00994 0.91636 1.21332 1.00858 0.91899 1.00673 1.17613 1.05524 0.91178 0.84831 1.43416 1.59108 1.23759 1.03797 1.21584 0.77678 0.85174 0.85385 1.90622 1.39347 1.26670 1.87180 1.21666 1.03466 1.00366 0.90097 1.18686 0.94557 0.94414 0.91738 1.21691 1.34572 1.10243 0.91653 0.90615 1.26124 0.94927 0.95928 1.03387 1.70173 1.39075 1.23219 1.25186 0.85321 0.77870 0.79343 0.77721 1.19718 1.21139 1.17930 1.18240 1.00250 0.83412 0.91771 1.85950 1.77392 1.15731 1.44770 0.87946 0.92099 0.92885 0.91468 0.91384 0.87624 0.86784 0.90921 0.75458 0.82069 0.83649 0.85909 0.73754 0.87510 0.87403 0.99613 0.99695 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.15 71.98 0.59 -1.96 16 2 C 0.11 1.75 1.13 -10.66 -0.01 1.74 16 3 C -0.14 -1.52 8.88 71.98 0.64 -0.88 16 4 C -0.14 -1.96 4.75 30.75 0.15 -1.82 16 5 C 0.16 2.43 2.98 29.89 0.09 2.52 16 6 H 0.09 1.07 7.00 -2.38 -0.02 1.05 16 7 O -0.57 -8.27 13.18 -148.98 -1.96 -10.23 16 8 C -0.18 -3.95 5.00 -19.76 -0.10 -4.05 16 9 C -0.10 -1.91 9.26 22.33 0.21 -1.71 16 10 C -0.13 -3.32 10.04 22.23 0.22 -3.10 16 11 C -0.13 -4.25 8.71 22.34 0.19 -4.05 16 12 C 0.10 3.34 6.45 38.25 0.25 3.59 16 13 N -0.66 -21.37 5.27 -302.95 -1.60 -22.97 16 14 C 0.51 20.88 7.63 87.66 0.67 21.55 16 15 O -0.56 -27.68 13.14 -3.08 -0.04 -27.72 16 16 C -0.12 -4.79 5.64 29.85 0.17 -4.62 16 17 C 0.04 2.45 4.26 29.85 0.13 2.58 16 18 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 19 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 21 N -0.94 -59.60 13.29 21.45 0.28 -59.32 16 22 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 C 0.11 2.94 6.03 22.61 0.14 3.07 16 27 O -0.32 -7.57 8.98 -92.56 -0.83 -8.40 16 28 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.89 5.88 -2.39 -0.01 0.88 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 36 H 0.39 2.74 7.48 -74.05 -0.55 2.18 16 37 H 0.16 1.72 6.74 -2.91 -0.02 1.70 16 38 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.12 4.89 5.78 -2.91 -0.02 4.87 16 40 H 0.42 11.29 8.25 -92.71 -0.76 10.53 16 41 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 42 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 43 H -0.01 -0.92 8.10 -2.39 -0.02 -0.94 16 44 H -0.02 -0.97 8.10 -2.38 -0.02 -0.99 16 45 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -80.17 362.91 1.60 -78.56 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -0.29 Total: 21.44 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 4.02 Total: -17.92 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.31 Total: -82.28 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -2.83 Total: -46.35 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -80.17 1.60 -78.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885660037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.127 kcal (2) G-P(sol) polarization free energy of solvation -80.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds