Wall clock time and date at job start Tue Mar 31 2020 12:29:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52998 * 110.80102 * 2 1
4 4 C 1.54986 * 110.90603 * 236.33326 * 2 1 3
5 5 O 1.44385 * 103.48909 * 204.77607 * 4 2 1
6 6 C 1.43742 * 106.97269 * 40.06104 * 5 4 2
7 7 H 1.09004 * 110.00184 * 92.98425 * 6 5 4
8 8 C 1.52997 * 109.88092 * 214.05866 * 6 5 4
9 9 C 1.50701 * 109.47273 * 292.83801 * 8 6 5
10 10 O 1.21281 * 120.00076 * 359.97438 * 9 8 6
11 11 N 1.34778 * 119.99601 * 179.97438 * 9 8 6
12 12 C 1.39928 * 119.99391 * 174.84976 * 11 9 8
13 13 C 1.38959 * 120.03780 * 326.00326 * 12 11 9
14 14 C 1.38159 * 120.06479 * 180.02562 * 13 12 11
15 15 C 1.38168 * 120.14064 * 359.74684 * 14 13 12
16 16 C 1.38913 * 120.06920 * 0.51200 * 15 14 13
17 17 O 1.35751 * 120.03492 * 179.76897 * 16 15 14
18 18 C 1.34823 * 117.00034 * 185.82732 * 17 16 15
19 19 H 1.07996 * 120.00197 * 5.11789 * 18 17 16
20 20 C 1.38661 * 120.00247 * 185.39125 * 18 17 16
21 21 N 1.31562 * 119.99450 * 359.72440 * 20 18 17
22 22 Si 1.86800 * 120.00210 * 179.72286 * 20 18 17
23 23 H 1.48497 * 109.46846 * 0.02562 * 22 20 18
24 24 H 1.48497 * 109.46702 * 119.99986 * 22 20 18
25 25 H 1.48493 * 109.47026 * 240.00055 * 22 20 18
26 26 C 1.38718 * 120.03097 * 146.02922 * 12 11 9
27 27 C 1.54097 * 107.29649 * 333.48591 * 6 5 4
28 28 H 1.09002 * 109.47395 * 296.37117 * 1 2 3
29 29 H 1.08996 * 109.47413 * 56.37279 * 1 2 3
30 30 H 1.09004 * 109.46872 * 176.37353 * 1 2 3
31 31 H 1.09002 * 109.47247 * 183.62434 * 3 2 1
32 32 H 1.08999 * 109.47679 * 303.62841 * 3 2 1
33 33 H 1.09007 * 109.46986 * 63.62808 * 3 2 1
34 34 H 1.09002 * 110.62234 * 323.27732 * 4 2 1
35 35 H 1.08999 * 110.62010 * 86.12317 * 4 2 1
36 36 H 1.08993 * 109.47435 * 172.83052 * 8 6 5
37 37 H 1.09002 * 109.46817 * 52.83470 * 8 6 5
38 38 H 0.97000 * 120.00373 * 354.85455 * 11 9 8
39 39 H 1.07991 * 119.96918 * 0.02562 * 13 12 11
40 40 H 1.08000 * 119.93530 * 180.02562 * 14 13 12
41 41 H 1.08001 * 119.97196 * 180.25079 * 15 14 13
42 42 H 0.96999 * 119.99368 * 179.97438 * 21 20 18
43 43 H 1.07995 * 120.06938 * 359.97438 * 26 12 11
44 44 H 1.09010 * 110.48594 * 120.70260 * 27 6 5
45 45 H 1.08994 * 110.48806 * 243.21946 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0734 1.4303 0.0000
4 6 2.0831 -0.8026 -1.2050
5 8 3.3941 -1.2146 -0.7621
6 6 3.2718 -1.5879 0.6206
7 1 3.0838 -2.6585 0.7025
8 6 4.5542 -1.2263 1.3726
9 6 5.6867 -2.0890 0.8783
10 8 5.4876 -2.9124 0.0104
11 7 6.9207 -1.9455 1.4008
12 6 7.9471 -2.8173 1.0207
13 6 7.6600 -4.1461 0.7326
14 6 8.6730 -5.0075 0.3578
15 6 9.9733 -4.5499 0.2630
16 6 10.2675 -3.2240 0.5549
17 8 11.5460 -2.7764 0.4661
18 6 11.7827 -1.5146 0.8781
19 1 10.9915 -0.9379 1.3336
20 6 13.0407 -0.9554 0.7118
21 7 14.0046 -1.6581 0.1569
22 14 13.3665 0.7954 1.2756
23 1 12.1274 1.3648 1.8634
24 1 14.4435 0.7937 2.2980
25 1 13.7878 1.6191 0.1141
26 6 9.2523 -2.3561 0.9316
27 6 2.0825 -0.8008 1.2042
28 1 -0.3634 0.4565 0.9207
29 1 -0.3634 0.5691 -0.8556
30 1 -0.3633 -1.0257 -0.0650
31 1 3.1612 1.4057 -0.0650
32 1 1.6704 1.9721 -0.8556
33 1 1.7756 1.9320 0.9208
34 1 1.4562 -1.6709 -1.4082
35 1 2.1556 -0.1679 -2.0882
36 1 4.4091 -1.3935 2.4398
37 1 4.7939 -0.1773 1.1985
38 1 7.0974 -1.2379 2.0404
39 1 6.6441 -4.5057 0.8018
40 1 8.4475 -6.0397 0.1340
41 1 10.7624 -5.2247 -0.0342
42 1 14.8845 -1.2667 0.0402
43 1 9.4779 -1.3239 1.1550
44 1 1.3246 -1.4838 1.5882
45 1 2.4206 -0.1263 1.9908
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000888264713.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:29:17
Heat of formation + Delta-G solvation = -91.023203 kcal
Electronic energy + Delta-G solvation = -26309.876960 eV
Core-core repulsion = 22485.865604 eV
Total energy + Delta-G solvation = -3824.011355 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-40.56202 -39.71313 -38.51936 -36.39327 -34.74489 -34.12954 -32.53189 -32.18495
-29.45944 -28.70465 -27.75816 -27.38348 -26.09188 -25.26318 -22.66615 -21.77987
-21.15474 -20.04058 -19.68791 -17.95445 -17.73954 -16.95503 -16.05786 -15.94285
-15.75319 -15.34502 -15.03847 -14.74448 -14.48457 -14.19121 -14.07541 -13.81740
-13.62495 -13.53846 -13.20081 -12.94753 -12.86680 -12.50148 -12.30615 -12.09143
-11.89580 -11.70952 -11.64098 -11.48804 -11.16374 -11.11003 -10.99462 -10.91681
-10.84013 -10.76335 -10.43210 -9.80468 -9.71243 -9.57124 -9.31692 -8.79253
-7.68623 -7.12054 -6.43343 -4.02749 2.02604 2.41146 2.93455 3.12652
3.13306 3.18630 3.30212 3.65990 3.97054 4.06226 4.34774 4.50567
4.61581 4.62900 4.70798 4.88344 4.97729 5.09543 5.13646 5.20313
5.25686 5.27839 5.30853 5.31008 5.43562 5.49487 5.55190 5.58854
5.70557 5.75975 5.79419 5.87414 5.95881 6.02714 6.11989 6.29996
6.32119 6.67162 6.79228 7.01926 7.03686 7.15820 7.34377 7.45107
7.76035 7.85802 8.01201 8.41591 9.02223 9.73409 10.74954
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.016828 B = 0.002674 C = 0.002395
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1663.485918 B =10470.614832 C =11690.237287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.101 4.101
3 C -0.136 4.136
4 C 0.053 3.947
5 O -0.354 6.354
6 C 0.095 3.905
7 H 0.076 0.924
8 C -0.141 4.141
9 C 0.510 3.490
10 O -0.507 6.507
11 N -0.674 5.674
12 C 0.183 3.817
13 C -0.205 4.205
14 C -0.063 4.063
15 C -0.201 4.201
16 C 0.168 3.832
17 O -0.177 6.177
18 C -0.391 4.391
19 H 0.090 0.910
20 C 0.038 3.962
21 N -0.862 5.862
22 Si 0.940 3.060
23 H -0.268 1.268
24 H -0.276 1.276
25 H -0.276 1.276
26 C -0.257 4.257
27 C -0.145 4.145
28 H 0.058 0.942
29 H 0.058 0.942
30 H 0.058 0.942
31 H 0.062 0.938
32 H 0.057 0.943
33 H 0.057 0.943
34 H 0.059 0.941
35 H 0.090 0.910
36 H 0.106 0.894
37 H 0.101 0.899
38 H 0.405 0.595
39 H 0.117 0.883
40 H 0.115 0.885
41 H 0.118 0.882
42 H 0.269 0.731
43 H 0.129 0.871
44 H 0.078 0.922
45 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.131 4.960 4.277 25.971
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.102 4.102
3 C -0.193 4.193
4 C -0.024 4.024
5 O -0.272 6.272
6 C 0.036 3.964
7 H 0.094 0.906
8 C -0.181 4.181
9 C 0.297 3.703
10 O -0.380 6.380
11 N -0.319 5.319
12 C 0.090 3.910
13 C -0.226 4.226
14 C -0.082 4.082
15 C -0.221 4.221
16 C 0.114 3.886
17 O -0.081 6.081
18 C -0.467 4.467
19 H 0.108 0.892
20 C -0.166 4.166
21 N -0.498 5.498
22 Si 0.765 3.235
23 H -0.192 1.192
24 H -0.202 1.202
25 H -0.202 1.202
26 C -0.278 4.278
27 C -0.183 4.183
28 H 0.077 0.923
29 H 0.077 0.923
30 H 0.077 0.923
31 H 0.081 0.919
32 H 0.076 0.924
33 H 0.076 0.924
34 H 0.078 0.922
35 H 0.109 0.891
36 H 0.124 0.876
37 H 0.119 0.881
38 H 0.240 0.760
39 H 0.135 0.865
40 H 0.133 0.867
41 H 0.136 0.864
42 H 0.079 0.921
43 H 0.147 0.853
44 H 0.097 0.903
45 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -24.678 4.302 3.398 25.279
hybrid contribution 0.089 1.409 0.723 1.586
sum -24.589 5.710 4.121 25.577
Atomic orbital electron populations
1.21756 0.93435 1.02055 1.02146 1.22139 0.96133 0.96435 0.95450
1.21774 1.01667 0.94090 1.01801 1.23648 0.84831 0.97182 0.96773
1.89049 1.28041 1.85881 1.24277 1.22411 0.92622 0.98963 0.82378
0.90589 1.21942 0.93463 1.01423 1.01255 1.20571 0.83383 0.84426
0.81957 1.90746 1.82943 1.35498 1.28860 1.43557 1.09238 1.33641
1.45482 1.17412 0.86670 0.89050 0.97912 1.20513 0.99329 0.91935
1.10834 1.20525 0.91741 0.98393 0.97557 1.20240 0.96841 0.93949
1.11090 1.19088 0.85076 0.92331 0.92123 1.84017 1.20361 1.30919
1.72753 1.21313 0.97681 0.88244 1.39464 0.89245 1.25284 0.94667
0.99850 0.96767 1.70051 1.02538 1.36712 1.40450 0.85658 0.78823
0.80521 0.78452 1.19214 1.20166 1.20178 1.20827 0.91500 1.01024
1.14473 1.23161 0.97637 0.99210 0.98251 0.92251 0.92272 0.92341
0.91873 0.92407 0.92424 0.92237 0.89143 0.87611 0.88114 0.76026
0.86473 0.86662 0.86412 0.92099 0.85306 0.90314 0.90103
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.75 8.55 37.16 0.32 -0.44 16
2 C -0.10 -0.72 0.99 -152.50 -0.15 -0.88 16
3 C -0.14 -0.94 8.54 37.16 0.32 -0.62 16
4 C 0.05 0.49 6.63 38.21 0.25 0.75 16
5 O -0.35 -4.67 10.57 -46.53 -0.49 -5.17 16
6 C 0.09 0.99 2.93 -26.16 -0.08 0.91 16
7 H 0.08 0.88 7.93 -51.93 -0.41 0.46 16
8 C -0.14 -1.40 5.19 -27.88 -0.14 -1.54 16
9 C 0.51 7.69 7.47 -10.98 -0.08 7.61 16
10 O -0.51 -9.73 13.24 -5.74 -0.08 -9.81 16
11 N -0.67 -10.39 5.34 -9.88 -0.05 -10.44 16
12 C 0.18 3.60 6.26 -83.72 -0.52 3.08 16
13 C -0.21 -4.07 8.65 -39.34 -0.34 -4.41 16
14 C -0.06 -1.23 10.03 -39.64 -0.40 -1.63 16
15 C -0.20 -4.44 9.99 -39.36 -0.39 -4.83 16
16 C 0.17 4.16 6.64 -39.13 -0.26 3.90 16
17 O -0.18 -5.10 9.76 0.07 0.00 -5.10 16
18 C -0.39 -10.93 9.44 30.89 0.29 -10.64 16
19 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16
20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16
21 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16
22 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16
23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16
24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16
25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
26 C -0.26 -5.70 9.05 -39.21 -0.35 -6.05 16
27 C -0.14 -1.03 5.80 -25.20 -0.15 -1.18 16
28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
30 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16
31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
33 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16
34 H 0.06 0.52 8.01 -51.93 -0.42 0.10 16
35 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16
36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16
37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
38 H 0.40 4.84 8.82 -40.82 -0.36 4.48 16
39 H 0.12 2.26 6.46 -52.49 -0.34 1.92 16
40 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16
41 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16
42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16
43 H 0.13 2.80 5.72 -52.49 -0.30 2.50 16
44 H 0.08 0.48 7.86 -51.92 -0.41 0.07 16
45 H 0.08 0.48 7.43 -51.93 -0.39 0.09 16
LS Contribution 370.18 15.07 5.58 5.58
Total: -1.00 -34.73 370.18 -7.77 -42.50
By element:
Atomic # 1 Polarization: 13.35 SS G_CDS: -6.68 Total: 6.67 kcal
Atomic # 6 Polarization: -13.22 SS G_CDS: -1.79 Total: -15.01 kcal
Atomic # 7 Polarization: -35.82 SS G_CDS: 0.71 Total: -35.11 kcal
Atomic # 8 Polarization: -19.51 SS G_CDS: -0.57 Total: -20.08 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -34.73 -7.77 -42.50 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000888264713.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.520 kcal
(2) G-P(sol) polarization free energy of solvation -34.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.023 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds