Wall clock time and date at job start Tue Mar 31 2020 12:29:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52998 * 110.80102 * 2 1
4 4 C 1.54986 * 110.90603 * 236.33326 * 2 1 3
5 5 O 1.44385 * 103.48909 * 204.77607 * 4 2 1
6 6 C 1.43742 * 106.97269 * 40.06104 * 5 4 2
7 7 H 1.09004 * 110.00184 * 92.98425 * 6 5 4
8 8 C 1.52997 * 109.88092 * 214.05866 * 6 5 4
9 9 C 1.50701 * 109.47273 * 292.83801 * 8 6 5
10 10 O 1.21281 * 120.00076 * 359.97438 * 9 8 6
11 11 N 1.34778 * 119.99601 * 179.97438 * 9 8 6
12 12 C 1.39928 * 119.99391 * 174.84976 * 11 9 8
13 13 C 1.38959 * 120.03780 * 326.00326 * 12 11 9
14 14 C 1.38159 * 120.06479 * 180.02562 * 13 12 11
15 15 C 1.38168 * 120.14064 * 359.74684 * 14 13 12
16 16 C 1.38913 * 120.06920 * 0.51200 * 15 14 13
17 17 O 1.35751 * 120.03492 * 179.76897 * 16 15 14
18 18 C 1.34823 * 117.00034 * 185.82732 * 17 16 15
19 19 H 1.07996 * 120.00197 * 5.11789 * 18 17 16
20 20 C 1.38661 * 120.00247 * 185.39125 * 18 17 16
21 21 N 1.31562 * 119.99450 * 359.72440 * 20 18 17
22 22 Si 1.86800 * 120.00210 * 179.72286 * 20 18 17
23 23 H 1.48497 * 109.46846 * 0.02562 * 22 20 18
24 24 H 1.48497 * 109.46702 * 119.99986 * 22 20 18
25 25 H 1.48493 * 109.47026 * 240.00055 * 22 20 18
26 26 C 1.38718 * 120.03097 * 146.02922 * 12 11 9
27 27 C 1.54097 * 107.29649 * 333.48591 * 6 5 4
28 28 H 1.09002 * 109.47395 * 296.37117 * 1 2 3
29 29 H 1.08996 * 109.47413 * 56.37279 * 1 2 3
30 30 H 1.09004 * 109.46872 * 176.37353 * 1 2 3
31 31 H 1.09002 * 109.47247 * 183.62434 * 3 2 1
32 32 H 1.08999 * 109.47679 * 303.62841 * 3 2 1
33 33 H 1.09007 * 109.46986 * 63.62808 * 3 2 1
34 34 H 1.09002 * 110.62234 * 323.27732 * 4 2 1
35 35 H 1.08999 * 110.62010 * 86.12317 * 4 2 1
36 36 H 1.08993 * 109.47435 * 172.83052 * 8 6 5
37 37 H 1.09002 * 109.46817 * 52.83470 * 8 6 5
38 38 H 0.97000 * 120.00373 * 354.85455 * 11 9 8
39 39 H 1.07991 * 119.96918 * 0.02562 * 13 12 11
40 40 H 1.08000 * 119.93530 * 180.02562 * 14 13 12
41 41 H 1.08001 * 119.97196 * 180.25079 * 15 14 13
42 42 H 0.96999 * 119.99368 * 179.97438 * 21 20 18
43 43 H 1.07995 * 120.06938 * 359.97438 * 26 12 11
44 44 H 1.09010 * 110.48594 * 120.70260 * 27 6 5
45 45 H 1.08994 * 110.48806 * 243.21946 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0734 1.4303 0.0000
4 6 2.0831 -0.8026 -1.2050
5 8 3.3941 -1.2146 -0.7621
6 6 3.2718 -1.5879 0.6206
7 1 3.0838 -2.6585 0.7025
8 6 4.5542 -1.2263 1.3726
9 6 5.6867 -2.0890 0.8783
10 8 5.4876 -2.9124 0.0104
11 7 6.9207 -1.9455 1.4008
12 6 7.9471 -2.8173 1.0207
13 6 7.6600 -4.1461 0.7326
14 6 8.6730 -5.0075 0.3578
15 6 9.9733 -4.5499 0.2630
16 6 10.2675 -3.2240 0.5549
17 8 11.5460 -2.7764 0.4661
18 6 11.7827 -1.5146 0.8781
19 1 10.9915 -0.9379 1.3336
20 6 13.0407 -0.9554 0.7118
21 7 14.0046 -1.6581 0.1569
22 14 13.3665 0.7954 1.2756
23 1 12.1274 1.3648 1.8634
24 1 14.4435 0.7937 2.2980
25 1 13.7878 1.6191 0.1141
26 6 9.2523 -2.3561 0.9316
27 6 2.0825 -0.8008 1.2042
28 1 -0.3634 0.4565 0.9207
29 1 -0.3634 0.5691 -0.8556
30 1 -0.3633 -1.0257 -0.0650
31 1 3.1612 1.4057 -0.0650
32 1 1.6704 1.9721 -0.8556
33 1 1.7756 1.9320 0.9208
34 1 1.4562 -1.6709 -1.4082
35 1 2.1556 -0.1679 -2.0882
36 1 4.4091 -1.3935 2.4398
37 1 4.7939 -0.1773 1.1985
38 1 7.0974 -1.2379 2.0404
39 1 6.6441 -4.5057 0.8018
40 1 8.4475 -6.0397 0.1340
41 1 10.7624 -5.2247 -0.0342
42 1 14.8845 -1.2667 0.0402
43 1 9.4779 -1.3239 1.1550
44 1 1.3246 -1.4838 1.5882
45 1 2.4206 -0.1263 1.9908
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000888264713.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:29:16
Heat of formation + Delta-G solvation = -113.671392 kcal
Electronic energy + Delta-G solvation = -26310.859059 eV
Core-core repulsion = 22485.865604 eV
Total energy + Delta-G solvation = -3824.993455 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.67634 -40.86535 -40.11423 -38.10196 -35.64422 -35.37096 -34.24379 -33.36306
-31.03599 -30.31893 -28.38587 -28.11269 -27.27939 -26.77474 -23.92907 -23.50518
-22.23576 -21.30581 -20.39487 -19.77170 -19.29784 -18.24451 -17.25713 -17.09153
-16.73804 -16.57384 -16.42816 -16.10996 -15.85018 -15.60978 -15.44058 -15.07132
-14.83984 -14.55396 -14.34154 -14.23289 -13.77218 -13.58524 -13.51893 -13.25779
-12.92076 -12.83685 -12.77965 -12.60558 -12.46219 -12.42887 -12.27137 -12.08499
-11.71649 -11.55953 -11.47647 -11.44195 -11.26140 -10.82059 -10.68909 -10.51161
-9.35787 -8.87488 -8.46727 -6.15445 0.40419 0.68553 1.35866 1.44416
1.54477 1.67802 2.08003 2.18147 2.83388 2.95579 3.16689 3.46196
3.48289 3.67192 3.81253 3.93038 3.95386 4.12407 4.22676 4.31764
4.38647 4.40626 4.44829 4.60595 4.62014 4.67246 4.70965 4.77768
4.82293 4.86968 4.90888 5.00993 5.02158 5.07249 5.10953 5.15860
5.26551 5.35230 5.39729 5.45873 5.49309 5.65953 5.66591 6.01494
6.05740 6.17413 6.50680 6.97573 7.19547 7.77269 8.76673
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.016828 B = 0.002674 C = 0.002395
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1663.485918 B =10470.614832 C =11690.237287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.096 4.096
3 C -0.135 4.135
4 C 0.044 3.956
5 O -0.393 6.393
6 C 0.088 3.912
7 H 0.058 0.942
8 C -0.130 4.130
9 C 0.507 3.493
10 O -0.551 6.551
11 N -0.666 5.666
12 C 0.188 3.812
13 C -0.201 4.201
14 C -0.052 4.052
15 C -0.216 4.216
16 C 0.134 3.866
17 O -0.227 6.227
18 C -0.412 4.412
19 H 0.103 0.897
20 C -0.024 4.024
21 N -0.920 5.920
22 Si 1.020 2.980
23 H -0.247 1.247
24 H -0.268 1.268
25 H -0.271 1.271
26 C -0.262 4.262
27 C -0.136 4.136
28 H 0.071 0.929
29 H 0.061 0.939
30 H 0.059 0.941
31 H 0.047 0.953
32 H 0.059 0.941
33 H 0.072 0.928
34 H 0.060 0.940
35 H 0.090 0.910
36 H 0.147 0.853
37 H 0.119 0.881
38 H 0.423 0.577
39 H 0.129 0.871
40 H 0.153 0.847
41 H 0.119 0.881
42 H 0.273 0.727
43 H 0.129 0.871
44 H 0.091 0.909
45 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.263 6.685 6.107 29.678
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.096 4.096
3 C -0.192 4.192
4 C -0.033 4.033
5 O -0.313 6.313
6 C 0.029 3.971
7 H 0.076 0.924
8 C -0.169 4.169
9 C 0.296 3.704
10 O -0.428 6.428
11 N -0.313 5.313
12 C 0.094 3.906
13 C -0.222 4.222
14 C -0.071 4.071
15 C -0.236 4.236
16 C 0.082 3.918
17 O -0.133 6.133
18 C -0.488 4.488
19 H 0.121 0.879
20 C -0.221 4.221
21 N -0.559 5.559
22 Si 0.839 3.161
23 H -0.170 1.170
24 H -0.193 1.193
25 H -0.197 1.197
26 C -0.283 4.283
27 C -0.173 4.173
28 H 0.090 0.910
29 H 0.080 0.920
30 H 0.078 0.922
31 H 0.066 0.934
32 H 0.078 0.922
33 H 0.091 0.909
34 H 0.078 0.922
35 H 0.108 0.892
36 H 0.164 0.836
37 H 0.137 0.863
38 H 0.261 0.739
39 H 0.147 0.853
40 H 0.171 0.829
41 H 0.137 0.863
42 H 0.082 0.918
43 H 0.147 0.853
44 H 0.110 0.890
45 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -27.880 6.033 5.259 29.006
hybrid contribution 0.805 0.696 0.099 1.069
sum -27.074 6.728 5.358 28.408
Atomic orbital electron populations
1.21739 0.92016 1.02379 1.02954 1.22115 0.97144 0.96145 0.94191
1.21774 1.00632 0.94077 1.02754 1.23822 0.83846 0.97658 0.97965
1.89008 1.30091 1.86199 1.25986 1.22537 0.94163 0.98613 0.81752
0.92382 1.22059 0.90716 1.00924 1.03213 1.21572 0.83804 0.84112
0.80877 1.90726 1.83532 1.37654 1.30859 1.43601 1.08539 1.33457
1.45679 1.17487 0.86834 0.89843 0.96478 1.20833 0.99846 0.92045
1.09434 1.20919 0.90314 1.00186 0.95671 1.20471 0.98217 0.93253
1.11637 1.19618 0.84748 0.93850 0.93548 1.83983 1.22615 1.31724
1.74969 1.21851 0.98574 0.88419 1.39971 0.87949 1.26630 0.94006
1.04889 0.96624 1.70200 1.03301 1.39336 1.43013 0.84512 0.79436
0.74004 0.78140 1.17050 1.19304 1.19660 1.20861 0.92129 1.00750
1.14589 1.23143 0.96455 0.99311 0.98418 0.91029 0.91957 0.92240
0.93393 0.92197 0.90873 0.92219 0.89225 0.83566 0.86320 0.73867
0.85341 0.82922 0.86286 0.91841 0.85319 0.89019 0.88071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.10 8.55 71.98 0.62 -0.48 16
2 C -0.10 -1.13 0.99 -50.88 -0.05 -1.18 16
3 C -0.14 -1.52 8.54 71.98 0.61 -0.90 16
4 C 0.04 0.78 6.63 72.66 0.48 1.26 16
5 O -0.39 -10.10 10.57 -138.18 -1.46 -11.56 16
6 C 0.09 1.65 2.93 30.96 0.09 1.74 16
7 H 0.06 1.28 7.93 -2.39 -0.02 1.26 16
8 C -0.13 -2.16 5.19 29.85 0.15 -2.01 16
9 C 0.51 14.26 7.47 87.66 0.65 14.92 16
10 O -0.55 -20.63 13.24 7.77 0.10 -20.53 16
11 N -0.67 -19.15 5.34 -303.55 -1.62 -20.77 16
12 C 0.19 7.23 6.26 38.14 0.24 7.46 16
13 C -0.20 -7.66 8.65 22.42 0.19 -7.47 16
14 C -0.05 -1.98 10.03 22.23 0.22 -1.76 16
15 C -0.22 -9.69 9.99 22.41 0.22 -9.47 16
16 C 0.13 6.85 6.64 22.56 0.15 7.00 16
17 O -0.23 -13.75 9.76 -22.68 -0.22 -13.97 16
18 C -0.41 -23.87 9.44 67.92 0.64 -23.23 16
19 H 0.10 5.38 5.30 -2.91 -0.02 5.37 16
20 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16
21 N -0.92 -56.63 13.67 21.62 0.30 -56.33 16
22 Si 1.02 42.34 29.55 68.60 2.03 44.37 16
23 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16
24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16
25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16
26 C -0.26 -11.71 9.05 22.51 0.20 -11.51 16
27 C -0.14 -1.48 5.80 31.58 0.18 -1.30 16
28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16
29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
30 H 0.06 0.49 8.09 -2.38 -0.02 0.47 16
31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16
34 H 0.06 1.01 8.01 -2.39 -0.02 0.99 16
35 H 0.09 1.52 8.06 -2.39 -0.02 1.50 16
36 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16
37 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16
38 H 0.42 8.96 8.82 -92.71 -0.82 8.14 16
39 H 0.13 4.69 6.46 -2.92 -0.02 4.67 16
40 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16
41 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16
42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
43 H 0.13 5.65 5.72 -2.91 -0.02 5.63 16
44 H 0.09 0.79 7.86 -2.38 -0.02 0.77 16
45 H 0.10 0.72 7.43 -2.39 -0.02 0.70 16
Total: -1.00 -80.40 370.18 4.39 -76.01
By element:
Atomic # 1 Polarization: 30.42 SS G_CDS: 0.19 Total: 30.61 kcal
Atomic # 6 Polarization: -32.90 SS G_CDS: 5.09 Total: -27.82 kcal
Atomic # 7 Polarization: -75.78 SS G_CDS: -1.32 Total: -77.10 kcal
Atomic # 8 Polarization: -44.49 SS G_CDS: -1.58 Total: -46.06 kcal
Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal
Total: -80.40 4.39 -76.01 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000888264713.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.664 kcal
(2) G-P(sol) polarization free energy of solvation -80.402 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds