Wall clock time and date at job start Tue Mar 31 2020 12:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 110.51748 * 2 1 4 4 O 1.20826 * 119.99606 * 116.00738 * 3 2 1 5 5 O 1.34224 * 120.00129 * 296.00071 * 3 2 1 6 6 C 1.56200 * 110.58591 * 122.95119 * 2 1 3 7 7 H 1.08999 * 116.29053 * 315.41399 * 6 2 1 8 8 C 1.53358 * 104.07726 * 185.19355 * 6 2 1 9 9 C 1.31798 * 108.42717 * 289.91502 * 8 6 2 10 10 C 1.53361 * 108.42119 * 359.97438 * 9 8 6 11 11 H 1.09003 * 116.98246 * 199.88640 * 10 9 8 12 12 C 1.57253 * 100.39763 * 82.22691 * 6 2 1 13 13 C 1.54840 * 110.58397 * 237.21649 * 2 1 3 14 14 H 1.09001 * 110.57832 * 0.14936 * 13 2 1 15 15 C 1.50694 * 110.58411 * 122.89688 * 13 2 1 16 16 O 1.21281 * 120.00221 * 59.25956 * 15 13 2 17 17 N 1.34782 * 120.00234 * 239.26265 * 15 13 2 18 18 C 1.46497 * 120.00146 * 184.79122 * 17 15 13 19 19 C 1.53002 * 109.47165 * 177.78364 * 18 17 15 20 20 C 1.50695 * 115.54605 * 41.94967 * 19 18 17 21 21 H 1.08003 * 120.00303 * 354.40899 * 20 19 18 22 22 C 1.37881 * 120.00044 * 174.41137 * 20 19 18 23 23 N 1.31511 * 120.00578 * 201.41289 * 22 20 19 24 24 Si 1.86806 * 119.99776 * 21.41385 * 22 20 19 25 25 H 1.48495 * 109.47131 * 83.29100 * 24 22 20 26 26 H 1.48492 * 109.47039 * 203.29810 * 24 22 20 27 27 H 1.48506 * 109.46849 * 323.29525 * 24 22 20 28 28 C 1.52994 * 117.50059 * 256.24265 * 19 18 17 29 29 C 1.53001 * 117.49795 * 187.61827 * 19 18 17 30 30 H 1.09010 * 109.47091 * 182.78662 * 1 2 3 31 31 H 1.09002 * 109.47293 * 302.78138 * 1 2 3 32 32 H 1.09001 * 109.47661 * 62.78476 * 1 2 3 33 33 H 0.96703 * 116.99908 * 179.97438 * 5 3 2 34 34 H 1.08004 * 125.78594 * 109.93390 * 8 6 2 35 35 H 1.08000 * 125.78417 * 179.97438 * 9 8 6 36 36 H 1.09000 * 112.52679 * 173.05458 * 12 6 2 37 37 H 1.09000 * 112.52436 * 300.82642 * 12 6 2 38 38 H 0.96995 * 119.99437 * 5.07168 * 17 15 13 39 39 H 1.08996 * 109.47430 * 297.78603 * 18 17 15 40 40 H 1.08998 * 109.46695 * 57.78557 * 18 17 15 41 41 H 0.96994 * 120.00289 * 179.97438 * 23 22 20 42 42 H 1.09007 * 117.49740 * 359.97438 * 28 19 18 43 43 H 1.09000 * 117.50123 * 145.02079 * 28 19 18 44 44 H 1.09004 * 117.49486 * 214.97876 * 29 19 18 45 45 H 1.09000 * 117.49881 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0581 1.4114 0.0000 4 8 2.6996 1.8163 0.9405 5 8 1.8161 2.2186 -1.0448 6 6 2.0792 -0.7954 1.2270 7 1 1.5974 -0.5986 2.1848 8 6 3.5971 -0.5890 1.1562 9 6 4.0605 -1.2571 0.1189 10 6 2.8833 -1.9554 -0.5729 11 1 3.1208 -2.7957 -1.2253 12 6 1.9831 -2.2658 0.6781 13 6 2.0743 -0.7849 -1.2187 14 1 1.2537 -1.1711 -1.8233 15 6 2.9779 0.0883 -2.0506 16 8 3.9704 0.5793 -1.5558 17 7 2.6831 0.3237 -3.3445 18 6 3.6142 1.0848 -4.1812 19 6 3.0710 1.1607 -5.6095 20 6 1.5915 1.4209 -5.7292 21 1 0.9749 1.4500 -4.8430 22 6 1.0250 1.6217 -6.9701 23 7 -0.1266 2.2483 -7.0738 24 14 1.8934 1.0038 -8.5043 25 1 1.5749 -0.4321 -8.7089 26 1 1.4352 1.7851 -9.6810 27 1 3.3605 1.1672 -8.3424 28 6 3.7168 0.2550 -6.6600 29 6 3.9830 1.7615 -6.6811 30 1 -0.3634 -1.0265 0.0500 31 1 -0.3634 0.5564 0.8640 32 1 -0.3634 0.4700 -0.9139 33 1 2.1751 3.1154 -0.9991 34 1 4.1866 0.0032 1.8406 35 1 5.0939 -1.3046 -0.1913 36 1 2.4390 -2.9930 1.3501 37 1 0.9654 -2.5434 0.4036 38 1 1.8526 -0.0074 -3.7206 39 1 3.7230 2.0923 -3.7798 40 1 4.5850 0.5894 -4.1875 41 1 -0.5249 2.3899 -7.9467 42 1 4.5289 -0.3947 -6.3335 43 1 3.0715 -0.1530 -7.4379 44 1 3.5127 2.3447 -7.4729 45 1 4.9698 2.1031 -6.3684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899778523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:26 Heat of formation + Delta-G solvation = -14.146048 kcal Electronic energy + Delta-G solvation = -28793.452769 eV Core-core repulsion = 24972.775057 eV Total energy + Delta-G solvation = -3820.677712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.04413 -39.11258 -38.59733 -37.29511 -35.69620 -33.67690 -32.96158 -32.18446 -29.87630 -28.32684 -26.82652 -26.04699 -25.38872 -23.42283 -21.65079 -21.27303 -20.07406 -19.77765 -19.33693 -18.18229 -17.58550 -17.02935 -16.77209 -16.42316 -15.93278 -15.52049 -15.41296 -14.79834 -14.54401 -14.01761 -13.56986 -13.16672 -13.02446 -12.89165 -12.71465 -12.40662 -12.33959 -12.24562 -12.21313 -11.92484 -11.71718 -11.69337 -11.30325 -11.16545 -11.12093 -11.03935 -10.49620 -10.39692 -10.30595 -10.08174 -9.98325 -9.59770 -9.46604 -9.15359 -8.63282 -8.46964 -8.18535 -8.14739 -6.33416 -4.22194 2.46095 2.49664 3.07813 3.16671 3.22505 3.33592 3.41911 3.74551 4.13397 4.31351 4.42831 4.54686 4.67422 4.88268 4.93357 5.03408 5.13689 5.20661 5.32751 5.35102 5.37551 5.46599 5.58101 5.58739 5.68063 5.72411 5.78034 5.85498 5.90239 5.95336 6.09326 6.11601 6.19990 6.25418 6.41815 6.44291 6.67223 6.69898 6.79118 6.84807 6.97659 7.10103 7.12260 7.63252 8.15864 8.20511 8.30047 8.71633 8.76933 9.34853 10.76804 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.004130 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.191874 B = 6777.692876 C = 7036.096718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C 0.500 3.500 4 O -0.509 6.509 5 O -0.505 6.505 6 C -0.050 4.050 7 H 0.107 0.893 8 C -0.156 4.156 9 C -0.139 4.139 10 C -0.063 4.063 11 H 0.109 0.891 12 C -0.119 4.119 13 C -0.103 4.103 14 H 0.104 0.896 15 C 0.517 3.483 16 O -0.545 6.545 17 N -0.695 5.695 18 C 0.172 3.828 19 C 0.015 3.985 20 C -0.497 4.497 21 H 0.083 0.917 22 C 0.085 3.915 23 N -0.872 5.872 24 Si 0.812 3.188 25 H -0.288 1.288 26 H -0.307 1.307 27 H -0.186 1.186 28 C -0.228 4.228 29 C -0.205 4.205 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.408 0.592 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.410 0.590 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.267 0.733 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 -8.291 13.597 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C 0.342 3.658 4 O -0.397 6.397 5 O -0.316 6.316 6 C -0.069 4.069 7 H 0.125 0.875 8 C -0.174 4.174 9 C -0.157 4.157 10 C -0.082 4.082 11 H 0.127 0.873 12 C -0.156 4.156 13 C -0.124 4.124 14 H 0.122 0.878 15 C 0.302 3.698 16 O -0.425 6.425 17 N -0.345 5.345 18 C 0.049 3.951 19 C 0.014 3.986 20 C -0.533 4.533 21 H 0.101 0.899 22 C -0.121 4.121 23 N -0.505 5.505 24 Si 0.642 3.358 25 H -0.216 1.216 26 H -0.236 1.236 27 H -0.109 1.109 28 C -0.265 4.265 29 C -0.242 4.242 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.266 0.734 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.247 0.753 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.771 -8.124 14.031 16.448 hybrid contribution 0.070 0.318 -1.512 1.546 sum 2.841 -7.806 12.519 15.024 Atomic orbital electron populations 1.21905 0.90925 1.03495 1.03613 1.21633 0.97264 0.88441 0.96731 1.22744 0.76078 0.87662 0.79326 1.90628 1.37009 1.75677 1.36389 1.84553 1.73525 1.28628 1.44941 1.22831 0.94695 0.93624 0.95700 0.87499 1.23699 0.94258 0.99378 1.00028 1.23737 0.98018 0.98613 0.95318 1.22875 0.93960 0.95262 0.96072 0.87331 1.24098 0.99810 0.95717 0.95992 1.22605 0.98819 0.95992 0.95024 0.87788 1.20082 0.85945 0.81269 0.82510 1.90684 1.28605 1.51726 1.71491 1.46023 1.24234 1.54700 1.09582 1.20675 0.90367 0.95046 0.89040 1.19505 0.94617 0.97982 0.86517 1.20198 0.89022 1.49580 0.94520 0.89872 1.24993 0.94796 0.93076 0.99254 1.70017 1.19165 1.36143 1.25215 0.88931 0.86235 0.78426 0.82180 1.21589 1.23550 1.10885 1.23687 1.03985 0.92641 1.06221 1.23529 1.00976 0.95097 1.04647 0.90552 0.91737 0.90544 0.73359 0.85698 0.85843 0.89767 0.90111 0.75301 0.92080 0.93270 0.92300 0.90568 0.90477 0.88828 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.40 37.15 0.31 -1.14 16 2 C -0.04 -0.50 0.67 -152.98 -0.10 -0.60 16 3 C 0.50 7.92 4.43 36.01 0.16 8.08 16 4 O -0.51 -9.16 15.29 -18.75 -0.29 -9.45 16 5 O -0.51 -7.95 11.61 -44.55 -0.52 -8.47 16 6 C -0.05 -0.57 4.10 -86.41 -0.35 -0.93 16 7 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 8 C -0.16 -2.14 7.65 -34.86 -0.27 -2.41 16 9 C -0.14 -1.89 7.48 -34.86 -0.26 -2.16 16 10 C -0.06 -0.72 4.96 -86.40 -0.43 -1.15 16 11 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.12 -1.08 6.60 -22.13 -0.15 -1.23 16 13 C -0.10 -1.34 2.83 -89.06 -0.25 -1.59 16 14 H 0.10 1.18 7.58 -51.93 -0.39 0.78 16 15 C 0.52 8.62 4.57 -10.99 -0.05 8.57 16 16 O -0.55 -10.53 12.51 -8.92 -0.11 -10.64 16 17 N -0.70 -12.29 5.26 -60.30 -0.32 -12.61 16 18 C 0.17 3.33 5.73 -4.04 -0.02 3.31 16 19 C 0.02 0.33 2.43 -155.66 -0.38 -0.05 16 20 C -0.50 -12.57 8.87 -34.44 -0.31 -12.88 16 21 H 0.08 2.21 7.16 -52.48 -0.38 1.84 16 22 C 0.08 2.26 5.34 -17.82 -0.10 2.17 16 23 N -0.87 -24.91 13.96 55.43 0.77 -24.14 16 24 Si 0.81 19.06 22.80 -169.99 -3.87 15.18 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.31 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.19 -3.96 3.28 56.52 0.19 -3.78 16 28 C -0.23 -4.67 8.47 -26.73 -0.23 -4.90 16 29 C -0.20 -4.23 8.47 -26.73 -0.23 -4.46 16 30 H 0.08 0.60 6.91 -51.92 -0.36 0.24 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.41 5.30 9.10 45.56 0.41 5.71 16 34 H 0.13 1.84 7.93 -52.48 -0.42 1.42 16 35 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.59 6.95 -51.93 -0.36 0.23 16 38 H 0.41 7.24 6.95 -40.82 -0.28 6.96 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.92 7.97 -51.93 -0.41 0.51 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 1.40 8.10 -51.92 -0.42 0.98 16 43 H 0.08 1.67 3.32 -51.93 -0.17 1.50 16 44 H 0.09 2.05 4.87 -51.93 -0.25 1.79 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -31.89 340.13 -7.62 -39.51 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -5.77 Total: 16.84 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.64 Total: -11.35 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.46 Total: -36.75 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.92 Total: -28.55 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -3.87 Total: 15.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.89 -7.62 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899778523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.362 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds