Wall clock time and date at job start Tue Mar 31 2020 12:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 110.51748 * 2 1 4 4 O 1.20826 * 119.99606 * 116.00738 * 3 2 1 5 5 O 1.34224 * 120.00129 * 296.00071 * 3 2 1 6 6 C 1.56200 * 110.58591 * 122.95119 * 2 1 3 7 7 H 1.08999 * 116.29053 * 315.41399 * 6 2 1 8 8 C 1.53358 * 104.07726 * 185.19355 * 6 2 1 9 9 C 1.31798 * 108.42717 * 289.91502 * 8 6 2 10 10 C 1.53361 * 108.42119 * 359.97438 * 9 8 6 11 11 H 1.09003 * 116.98246 * 199.88640 * 10 9 8 12 12 C 1.57253 * 100.39763 * 82.22691 * 6 2 1 13 13 C 1.54840 * 110.58397 * 237.21649 * 2 1 3 14 14 H 1.09001 * 110.57832 * 0.14936 * 13 2 1 15 15 C 1.50694 * 110.58411 * 122.89688 * 13 2 1 16 16 O 1.21281 * 120.00221 * 59.25956 * 15 13 2 17 17 N 1.34782 * 120.00234 * 239.26265 * 15 13 2 18 18 C 1.46497 * 120.00146 * 184.79122 * 17 15 13 19 19 C 1.53002 * 109.47165 * 177.78364 * 18 17 15 20 20 C 1.50695 * 115.54605 * 41.94967 * 19 18 17 21 21 H 1.08003 * 120.00303 * 354.40899 * 20 19 18 22 22 C 1.37881 * 120.00044 * 174.41137 * 20 19 18 23 23 N 1.31511 * 120.00578 * 201.41289 * 22 20 19 24 24 Si 1.86806 * 119.99776 * 21.41385 * 22 20 19 25 25 H 1.48495 * 109.47131 * 83.29100 * 24 22 20 26 26 H 1.48492 * 109.47039 * 203.29810 * 24 22 20 27 27 H 1.48506 * 109.46849 * 323.29525 * 24 22 20 28 28 C 1.52994 * 117.50059 * 256.24265 * 19 18 17 29 29 C 1.53001 * 117.49795 * 187.61827 * 19 18 17 30 30 H 1.09010 * 109.47091 * 182.78662 * 1 2 3 31 31 H 1.09002 * 109.47293 * 302.78138 * 1 2 3 32 32 H 1.09001 * 109.47661 * 62.78476 * 1 2 3 33 33 H 0.96703 * 116.99908 * 179.97438 * 5 3 2 34 34 H 1.08004 * 125.78594 * 109.93390 * 8 6 2 35 35 H 1.08000 * 125.78417 * 179.97438 * 9 8 6 36 36 H 1.09000 * 112.52679 * 173.05458 * 12 6 2 37 37 H 1.09000 * 112.52436 * 300.82642 * 12 6 2 38 38 H 0.96995 * 119.99437 * 5.07168 * 17 15 13 39 39 H 1.08996 * 109.47430 * 297.78603 * 18 17 15 40 40 H 1.08998 * 109.46695 * 57.78557 * 18 17 15 41 41 H 0.96994 * 120.00289 * 179.97438 * 23 22 20 42 42 H 1.09007 * 117.49740 * 359.97438 * 28 19 18 43 43 H 1.09000 * 117.50123 * 145.02079 * 28 19 18 44 44 H 1.09004 * 117.49486 * 214.97876 * 29 19 18 45 45 H 1.09000 * 117.49881 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0581 1.4114 0.0000 4 8 2.6996 1.8163 0.9405 5 8 1.8161 2.2186 -1.0448 6 6 2.0792 -0.7954 1.2270 7 1 1.5974 -0.5986 2.1848 8 6 3.5971 -0.5890 1.1562 9 6 4.0605 -1.2571 0.1189 10 6 2.8833 -1.9554 -0.5729 11 1 3.1208 -2.7957 -1.2253 12 6 1.9831 -2.2658 0.6781 13 6 2.0743 -0.7849 -1.2187 14 1 1.2537 -1.1711 -1.8233 15 6 2.9779 0.0883 -2.0506 16 8 3.9704 0.5793 -1.5558 17 7 2.6831 0.3237 -3.3445 18 6 3.6142 1.0848 -4.1812 19 6 3.0710 1.1607 -5.6095 20 6 1.5915 1.4209 -5.7292 21 1 0.9749 1.4500 -4.8430 22 6 1.0250 1.6217 -6.9701 23 7 -0.1266 2.2483 -7.0738 24 14 1.8934 1.0038 -8.5043 25 1 1.5749 -0.4321 -8.7089 26 1 1.4352 1.7851 -9.6810 27 1 3.3605 1.1672 -8.3424 28 6 3.7168 0.2550 -6.6600 29 6 3.9830 1.7615 -6.6811 30 1 -0.3634 -1.0265 0.0500 31 1 -0.3634 0.5564 0.8640 32 1 -0.3634 0.4700 -0.9139 33 1 2.1751 3.1154 -0.9991 34 1 4.1866 0.0032 1.8406 35 1 5.0939 -1.3046 -0.1913 36 1 2.4390 -2.9930 1.3501 37 1 0.9654 -2.5434 0.4036 38 1 1.8526 -0.0074 -3.7206 39 1 3.7230 2.0923 -3.7798 40 1 4.5850 0.5894 -4.1875 41 1 -0.5249 2.3899 -7.9467 42 1 4.5289 -0.3947 -6.3335 43 1 3.0715 -0.1530 -7.4379 44 1 3.5127 2.3447 -7.4729 45 1 4.9698 2.1031 -6.3684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899778523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:25 Heat of formation + Delta-G solvation = -35.856853 kcal Electronic energy + Delta-G solvation = -28794.394220 eV Core-core repulsion = 24972.775057 eV Total energy + Delta-G solvation = -3821.619163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.09675 -40.39282 -39.96699 -38.87561 -36.98772 -35.12017 -34.20140 -33.94215 -30.94058 -29.25910 -28.21801 -27.44265 -26.87814 -24.58017 -23.26810 -22.37152 -21.57469 -21.09107 -20.45492 -19.27171 -18.85564 -18.39836 -18.25122 -17.78764 -17.69760 -16.74207 -16.63895 -16.01816 -15.77812 -15.37746 -15.12624 -14.83332 -14.41338 -14.11124 -13.98526 -13.86240 -13.70940 -13.48292 -13.29696 -13.15191 -12.88951 -12.66377 -12.44228 -12.42496 -12.20852 -12.05013 -11.97916 -11.92244 -11.73108 -11.43984 -11.37469 -11.25369 -11.01589 -10.69632 -10.43417 -9.92909 -9.80846 -9.50275 -8.37545 -6.26932 1.26110 1.35376 1.42037 1.46308 1.49780 1.81576 2.05522 2.36400 2.44865 2.81877 3.20843 3.47654 3.53224 3.61659 3.92906 3.95730 4.02982 4.05820 4.13573 4.28220 4.29699 4.30825 4.39876 4.44286 4.57541 4.60399 4.73559 4.78019 4.84677 4.86411 4.90854 4.96726 5.05675 5.09880 5.13427 5.13636 5.29103 5.33290 5.34426 5.63055 5.64547 5.70262 5.72391 6.06140 6.27091 6.71308 6.79489 6.99196 7.31282 7.39864 8.75550 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.004130 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.191874 B = 6777.692876 C = 7036.096718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.040 4.040 3 C 0.492 3.508 4 O -0.539 6.539 5 O -0.516 6.516 6 C -0.049 4.049 7 H 0.121 0.879 8 C -0.170 4.170 9 C -0.150 4.150 10 C -0.059 4.059 11 H 0.129 0.871 12 C -0.099 4.099 13 C -0.103 4.103 14 H 0.128 0.872 15 C 0.515 3.485 16 O -0.575 6.575 17 N -0.698 5.698 18 C 0.182 3.818 19 C -0.003 4.003 20 C -0.490 4.490 21 H 0.058 0.942 22 C 0.032 3.968 23 N -0.923 5.923 24 Si 0.854 3.146 25 H -0.292 1.292 26 H -0.326 1.326 27 H -0.140 1.140 28 C -0.213 4.213 29 C -0.203 4.203 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.413 0.587 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.410 0.590 39 H 0.044 0.956 40 H 0.060 0.940 41 H 0.264 0.736 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -10.870 13.882 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.042 4.042 3 C 0.336 3.664 4 O -0.429 6.429 5 O -0.328 6.328 6 C -0.067 4.067 7 H 0.139 0.861 8 C -0.189 4.189 9 C -0.168 4.168 10 C -0.077 4.077 11 H 0.146 0.854 12 C -0.135 4.135 13 C -0.124 4.124 14 H 0.146 0.854 15 C 0.303 3.697 16 O -0.457 6.457 17 N -0.348 5.348 18 C 0.058 3.942 19 C -0.004 4.004 20 C -0.526 4.526 21 H 0.077 0.923 22 C -0.169 4.169 23 N -0.560 5.560 24 Si 0.684 3.316 25 H -0.221 1.221 26 H -0.257 1.257 27 H -0.062 1.062 28 C -0.250 4.250 29 C -0.241 4.241 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.273 0.727 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.247 0.753 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.290 -10.717 14.326 18.191 hybrid contribution -0.025 1.221 -1.493 1.929 sum 3.266 -9.496 12.833 16.294 Atomic orbital electron populations 1.21948 0.88676 1.05698 1.03264 1.21852 0.98905 0.86183 0.97270 1.23579 0.75386 0.88815 0.78605 1.90609 1.38397 1.76523 1.37380 1.84561 1.73608 1.29315 1.45322 1.22960 0.92528 0.95266 0.95945 0.86098 1.23784 0.96097 0.99094 0.99876 1.23857 0.98245 0.99171 0.95561 1.23019 0.92844 0.94807 0.97067 0.85350 1.24092 1.01015 0.94052 0.94381 1.22729 0.98988 0.95916 0.94817 0.85439 1.20725 0.85938 0.80966 0.82093 1.90678 1.30155 1.52939 1.71890 1.46020 1.23998 1.54696 1.10047 1.20466 0.91084 0.94695 0.87977 1.19434 0.92706 0.99960 0.88284 1.20408 0.90994 1.47854 0.93387 0.92344 1.25693 0.95471 0.93555 1.02152 1.70133 1.21386 1.38958 1.25505 0.88368 0.88060 0.76980 0.78146 1.22092 1.25652 1.06228 1.23685 1.04037 0.92831 1.04469 1.23578 1.01860 0.95315 1.03361 0.87127 0.91132 0.91848 0.72712 0.87999 0.87571 0.88085 0.87092 0.75306 0.93738 0.92137 0.92709 0.87442 0.91330 0.89967 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.40 71.98 0.60 -1.84 16 2 C -0.04 -0.95 0.67 -51.19 -0.03 -0.99 16 3 C 0.49 15.63 4.43 71.24 0.32 15.95 16 4 O -0.54 -19.87 15.29 21.96 0.34 -19.53 16 5 O -0.52 -16.63 11.61 -46.28 -0.54 -17.17 16 6 C -0.05 -1.00 4.10 -8.06 -0.03 -1.03 16 7 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 8 C -0.17 -4.63 7.65 25.79 0.20 -4.43 16 9 C -0.15 -3.98 7.48 25.79 0.19 -3.79 16 10 C -0.06 -1.16 4.96 -8.06 -0.04 -1.20 16 11 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 12 C -0.10 -1.35 6.60 33.58 0.22 -1.13 16 13 C -0.10 -2.45 2.83 -9.78 -0.03 -2.48 16 14 H 0.13 2.44 7.58 -2.39 -0.02 2.42 16 15 C 0.52 16.72 4.57 87.65 0.40 17.12 16 16 O -0.58 -22.22 12.51 10.81 0.14 -22.08 16 17 N -0.70 -24.02 5.26 -463.07 -2.44 -26.46 16 18 C 0.18 6.81 5.73 86.38 0.49 7.30 16 19 C 0.00 -0.11 2.43 -52.93 -0.13 -0.24 16 20 C -0.49 -24.82 8.87 25.60 0.23 -24.59 16 21 H 0.06 3.18 7.16 -2.91 -0.02 3.16 16 22 C 0.03 1.72 5.34 84.66 0.45 2.17 16 23 N -0.92 -54.34 13.96 21.45 0.30 -54.04 16 24 Si 0.85 38.78 22.80 68.60 1.56 40.35 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.33 -15.80 7.11 99.48 0.71 -15.09 16 27 H -0.14 -5.46 3.28 99.48 0.33 -5.13 16 28 C -0.21 -7.93 8.47 30.59 0.26 -7.67 16 29 C -0.20 -7.76 8.47 30.60 0.26 -7.50 16 30 H 0.11 1.19 6.91 -2.38 -0.02 1.17 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 11.40 9.10 -74.06 -0.67 10.73 16 34 H 0.10 3.15 7.93 -2.91 -0.02 3.13 16 35 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 0.94 6.95 -2.39 -0.02 0.92 16 38 H 0.41 14.14 6.95 -92.71 -0.64 13.49 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 2.13 7.97 -2.39 -0.02 2.11 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.11 3.38 8.10 -2.38 -0.02 3.37 16 43 H 0.07 2.73 3.32 -2.39 -0.01 2.72 16 44 H 0.08 3.37 4.87 -2.38 -0.01 3.35 16 45 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -71.60 340.13 2.06 -69.54 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -0.66 Total: 43.74 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 3.36 Total: -14.34 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.14 Total: -80.50 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -0.07 Total: -58.78 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.56 Total: 40.35 kcal Total: -71.60 2.06 -69.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899778523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.684 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds