Wall clock time and date at job start Tue Mar 31 2020 12:27:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34844 * 117.00059 * 2 1
4 4 O 1.21565 * 119.99931 * 0.02562 * 3 2 1
5 5 C 1.47007 * 120.00125 * 180.02562 * 3 2 1
6 6 C 1.39567 * 120.48608 * 354.31736 * 5 3 2
7 7 C 1.37798 * 120.13932 * 179.74457 * 6 5 3
8 8 C 1.39416 * 121.19926 * 0.56373 * 7 6 5
9 9 N 1.39155 * 119.50263 * 179.70898 * 8 7 6
10 10 C 1.46495 * 119.99833 * 359.73090 * 9 8 7
11 11 C 1.53005 * 109.46686 * 179.97438 * 10 9 8
12 12 H 1.08999 * 112.90690 * 43.75569 * 11 10 9
13 13 C 1.53784 * 113.61000 * 174.99420 * 11 10 9
14 14 C 1.53785 * 87.07840 * 139.98204 * 13 11 10
15 15 C 1.53000 * 113.61173 * 89.20199 * 14 13 11
16 16 O 1.42902 * 113.61863 * 220.01937 * 14 13 11
17 17 C 1.53772 * 113.61606 * 272.49323 * 11 10 9
18 18 C 1.38437 * 120.99510 * 359.43484 * 8 7 6
19 19 C 1.40500 * 119.77000 * 0.27548 * 18 8 7
20 20 C 1.40949 * 120.56756 * 179.97438 * 19 18 8
21 21 H 1.07997 * 119.99839 * 147.52647 * 20 19 18
22 22 C 1.40249 * 119.99788 * 327.53482 * 20 19 18
23 23 N 1.30634 * 120.00197 * 350.49377 * 22 20 19
24 24 Si 1.86801 * 119.99907 * 170.48990 * 22 20 19
25 25 H 1.48504 * 109.47044 * 359.97438 * 24 22 20
26 26 H 1.48503 * 109.46957 * 119.99709 * 24 22 20
27 27 H 1.48498 * 109.47208 * 240.00039 * 24 22 20
28 28 H 1.08993 * 109.47674 * 59.99593 * 1 2 3
29 29 H 1.08996 * 109.47179 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47053 * 299.99344 * 1 2 3
31 31 H 1.08000 * 119.93372 * 0.02562 * 6 5 3
32 32 H 1.08004 * 119.40474 * 180.27223 * 7 6 5
33 33 H 0.96999 * 119.99514 * 179.72472 * 9 8 7
34 34 H 1.09003 * 109.47479 * 59.99705 * 10 9 8
35 35 H 1.08998 * 109.47348 * 299.99642 * 10 9 8
36 36 H 1.09004 * 113.61597 * 25.44182 * 13 11 10
37 37 H 1.08995 * 113.61714 * 254.52864 * 13 11 10
38 38 H 1.08994 * 109.47303 * 59.99945 * 15 14 13
39 39 H 1.09001 * 109.47084 * 180.02562 * 15 14 13
40 40 H 1.09003 * 109.47164 * 299.99973 * 15 14 13
41 41 H 0.96696 * 114.00011 * 180.02562 * 16 14 13
42 42 H 1.09001 * 113.61173 * 105.47291 * 17 11 10
43 43 H 1.08998 * 113.69168 * 334.58429 * 17 11 10
44 44 H 1.08002 * 120.11529 * 180.30212 * 18 8 7
45 45 H 0.96995 * 120.00254 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0642 1.2015 0.0000
4 8 1.4021 2.2210 0.0005
5 6 3.5322 1.2784 -0.0006
6 6 4.3020 0.1203 0.1180
7 6 5.6777 0.2002 0.1113
8 6 6.3293 1.4276 -0.0009
9 7 7.7202 1.4678 0.0022
10 6 8.4886 0.2270 0.1289
11 6 9.9843 0.5486 0.1041
12 1 10.2428 1.4117 0.7176
13 6 10.8816 -0.6752 0.3532
14 6 11.8135 -0.1147 -0.7341
15 6 12.8798 0.8408 -0.1945
16 8 12.3528 -1.1169 -1.5983
17 6 10.5802 0.5989 -1.3125
18 6 5.6134 2.6064 -0.1212
19 6 4.2088 2.5723 -0.1250
20 6 3.4633 3.7623 -0.2460
21 1 2.5106 3.7533 -0.7546
22 6 3.9587 4.9581 0.2940
23 7 5.0126 4.9391 1.0657
24 14 3.1116 6.5780 -0.0904
25 1 1.9499 6.3299 -0.9815
26 1 2.6428 7.2033 1.1724
27 1 4.0690 7.4887 -0.7681
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5137 0.8901
31 1 3.8186 -0.8410 0.2106
32 1 6.2618 -0.7040 0.1994
33 1 8.1810 2.3175 -0.0795
34 1 8.2462 -0.4368 -0.7010
35 1 8.2372 -0.2616 1.0702
36 1 10.4142 -1.6218 0.0821
37 1 11.3304 -0.6926 1.3463
38 1 13.5034 0.3174 0.5301
39 1 13.4993 1.1963 -1.0179
40 1 12.3959 1.6898 0.2885
41 1 12.9400 -0.7705 -2.2840
42 1 10.7856 1.6100 -1.6641
43 1 10.0312 0.0012 -2.0401
44 1 6.1328 3.5489 -0.2122
45 1 5.3550 5.7661 1.4394
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001168345170.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:56
Heat of formation + Delta-G solvation = -99.242384 kcal
Electronic energy + Delta-G solvation = -26303.087683 eV
Core-core repulsion = 22478.719917 eV
Total energy + Delta-G solvation = -3824.367766 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.09242 -39.10259 -37.63799 -35.77262 -35.13905 -34.23227 -33.26727 -30.15449
-29.62555 -28.52913 -27.13815 -25.97653 -25.54618 -25.18436 -22.09320 -21.88619
-20.68309 -19.36932 -19.00439 -17.35248 -17.07266 -16.51268 -15.89200 -15.70464
-15.44993 -15.29756 -15.19484 -14.75807 -14.50696 -14.21380 -13.48265 -13.39786
-12.90128 -12.89176 -12.75230 -12.43740 -12.37589 -12.24811 -12.11406 -11.64668
-11.56289 -11.42890 -11.31504 -11.23574 -11.10496 -10.91295 -10.71175 -10.63055
-10.36836 -10.21328 -9.85960 -9.85405 -9.57976 -9.37121 -8.88252 -8.74264
-7.38745 -6.85828 -6.32941 -4.45086 2.37927 2.84547 3.08421 3.18118
3.26340 3.85834 3.89135 3.94936 4.06219 4.17274 4.35441 4.41612
4.56996 4.66555 4.73830 5.12755 5.22288 5.37261 5.41133 5.60374
5.63515 5.65170 5.66344 5.71212 5.74897 5.79251 5.91005 5.92120
6.00852 6.13410 6.15999 6.32472 6.36835 6.51653 6.84343 6.99291
7.16509 7.25290 7.45775 7.46776 7.59076 7.70260 7.86213 8.03907
8.40483 8.54795 8.70021 8.81481 8.93403 9.22281 10.11129
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.012917 B = 0.003187 C = 0.002626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2167.171109 B = 8784.911299 C =10660.066713
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 O -0.376 6.376
3 C 0.505 3.495
4 O -0.524 6.524
5 C -0.288 4.288
6 C 0.003 3.997
7 C -0.305 4.305
8 C 0.243 3.757
9 N -0.753 5.753
10 C 0.146 3.854
11 C -0.118 4.118
12 H 0.096 0.904
13 C -0.113 4.113
14 C 0.097 3.903
15 C -0.161 4.161
16 O -0.555 6.555
17 C -0.155 4.155
18 C -0.238 4.238
19 C 0.183 3.817
20 C -0.415 4.415
21 H 0.104 0.896
22 C 0.072 3.928
23 N -0.782 5.782
24 Si 0.915 3.085
25 H -0.257 1.257
26 H -0.273 1.273
27 H -0.273 1.273
28 H 0.052 0.948
29 H 0.085 0.915
30 H 0.052 0.948
31 H 0.102 0.898
32 H 0.093 0.907
33 H 0.391 0.609
34 H 0.054 0.946
35 H 0.053 0.947
36 H 0.092 0.908
37 H 0.074 0.926
38 H 0.065 0.935
39 H 0.061 0.939
40 H 0.072 0.928
41 H 0.373 0.627
42 H 0.068 0.932
43 H 0.091 0.909
44 H 0.120 0.880
45 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.446 -6.233 -2.078 13.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 O -0.295 6.295
3 C 0.357 3.643
4 O -0.416 6.416
5 C -0.292 4.292
6 C -0.017 4.017
7 C -0.327 4.327
8 C 0.142 3.858
9 N -0.385 5.385
10 C 0.021 3.979
11 C -0.137 4.137
12 H 0.114 0.886
13 C -0.151 4.151
14 C 0.056 3.944
15 C -0.218 4.218
16 O -0.360 6.360
17 C -0.192 4.192
18 C -0.263 4.263
19 C 0.179 3.821
20 C -0.443 4.443
21 H 0.121 0.879
22 C -0.148 4.148
23 N -0.407 5.407
24 Si 0.739 3.261
25 H -0.180 1.180
26 H -0.198 1.198
27 H -0.198 1.198
28 H 0.071 0.929
29 H 0.104 0.896
30 H 0.071 0.929
31 H 0.120 0.880
32 H 0.112 0.888
33 H 0.225 0.775
34 H 0.072 0.928
35 H 0.072 0.928
36 H 0.111 0.889
37 H 0.093 0.907
38 H 0.084 0.916
39 H 0.080 0.920
40 H 0.091 0.909
41 H 0.221 0.779
42 H 0.087 0.913
43 H 0.110 0.890
44 H 0.138 0.862
45 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 11.062 -6.392 -1.525 12.867
hybrid contribution 0.024 1.467 -0.313 1.500
sum 11.086 -4.925 -1.837 12.269
Atomic orbital electron populations
1.22937 0.78954 1.01835 1.01636 1.86600 1.21261 1.35353 1.86290
1.21311 0.89608 0.80074 0.73331 1.90725 1.66928 1.35258 1.48656
1.19660 0.86574 0.95032 1.27889 1.20600 0.92965 0.95978 0.92115
1.19805 0.93930 0.94845 1.24123 1.17734 0.81888 0.94219 0.91949
1.44419 1.03381 1.07225 1.83458 1.21064 0.88246 0.88102 1.00525
1.22562 0.94725 0.98893 0.97536 0.88584 1.23071 0.95619 0.98668
0.97711 1.22695 0.91310 0.88805 0.91548 1.22154 0.98512 0.99410
1.01745 1.86567 1.67244 1.35690 1.46519 1.23755 0.97105 1.01172
0.97207 1.20603 0.93384 0.95080 1.17215 1.18114 0.90693 0.89772
0.83563 1.20185 1.05150 0.91011 1.27976 0.87850 1.26117 0.94143
1.01419 0.93096 1.69766 1.19424 1.29776 1.21716 0.86129 0.80324
0.80155 0.79443 1.17989 1.19835 1.19824 0.92914 0.89604 0.92909
0.87956 0.88839 0.77515 0.92812 0.92841 0.88927 0.90748 0.91614
0.92034 0.90943 0.77935 0.91290 0.89043 0.86202 0.90832
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.67 10.57 101.05 1.07 1.74 16
2 O -0.38 -7.93 9.85 -40.89 -0.40 -8.33 16
3 C 0.51 12.56 7.85 34.28 0.27 12.83 16
4 O -0.52 -14.10 13.55 -19.31 -0.26 -14.37 16
5 C -0.29 -7.35 6.07 -102.50 -0.62 -7.97 16
6 C 0.00 0.06 9.60 -39.25 -0.38 -0.32 16
7 C -0.30 -6.57 9.24 -39.30 -0.36 -6.93 16
8 C 0.24 5.33 6.63 -84.02 -0.56 4.77 16
9 N -0.75 -13.13 5.71 -58.77 -0.34 -13.46 16
10 C 0.15 2.06 4.71 -4.04 -0.02 2.04 16
11 C -0.12 -1.30 3.41 -89.81 -0.31 -1.61 16
12 H 0.10 1.02 7.66 -51.93 -0.40 0.62 16
13 C -0.11 -1.14 7.06 -25.92 -0.18 -1.33 16
14 C 0.10 0.92 1.94 -89.81 -0.17 0.74 16
15 C -0.16 -1.21 9.32 37.16 0.35 -0.87 16
16 O -0.55 -5.53 13.49 -35.23 -0.48 -6.00 16
17 C -0.15 -1.61 7.03 -25.92 -0.18 -1.79 16
18 C -0.24 -5.93 8.46 -38.66 -0.33 -6.26 16
19 C 0.18 4.94 5.67 -104.67 -0.59 4.35 16
20 C -0.42 -11.38 7.85 -37.80 -0.30 -11.68 16
21 H 0.10 2.94 5.96 -52.49 -0.31 2.63 16
22 C 0.07 1.81 5.26 -17.31 -0.09 1.72 16
23 N -0.78 -19.81 11.05 55.56 0.61 -19.20 16
24 Si 0.92 19.32 29.57 -169.99 -5.03 14.29 16
25 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16
26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
29 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16
30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.10 2.09 7.63 -52.49 -0.40 1.69 16
32 H 0.09 1.79 6.58 -52.48 -0.35 1.44 16
33 H 0.39 6.42 8.46 -40.82 -0.35 6.07 16
34 H 0.05 0.78 7.60 -51.93 -0.39 0.39 16
35 H 0.05 0.78 7.91 -51.93 -0.41 0.37 16
36 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16
37 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16
38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
40 H 0.07 0.54 7.35 -51.93 -0.38 0.16 16
41 H 0.37 2.24 9.04 45.56 0.41 2.65 16
42 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16
43 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16
44 H 0.12 3.04 6.49 -52.49 -0.34 2.70 16
45 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16
LS Contribution 371.08 15.07 5.59 5.59
Total: -1.00 -30.95 371.08 -8.54 -39.49
By element:
Atomic # 1 Polarization: 18.39 SS G_CDS: -5.84 Total: 12.55 kcal
Atomic # 6 Polarization: -8.15 SS G_CDS: -2.41 Total: -10.55 kcal
Atomic # 7 Polarization: -32.94 SS G_CDS: 0.28 Total: -32.66 kcal
Atomic # 8 Polarization: -27.56 SS G_CDS: -1.14 Total: -28.70 kcal
Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -30.95 -8.54 -39.49 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168345170.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.752 kcal
(2) G-P(sol) polarization free energy of solvation -30.951 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.242 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds