Wall clock time and date at job start Tue Mar 31 2020 12:27:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34844 * 117.00059 * 2 1
4 4 O 1.21565 * 119.99931 * 0.02562 * 3 2 1
5 5 C 1.47007 * 120.00125 * 180.02562 * 3 2 1
6 6 C 1.39567 * 120.48608 * 354.31736 * 5 3 2
7 7 C 1.37798 * 120.13932 * 179.74457 * 6 5 3
8 8 C 1.39416 * 121.19926 * 0.56373 * 7 6 5
9 9 N 1.39155 * 119.50263 * 179.70898 * 8 7 6
10 10 C 1.46495 * 119.99833 * 359.73090 * 9 8 7
11 11 C 1.53005 * 109.46686 * 179.97438 * 10 9 8
12 12 H 1.08999 * 112.90690 * 43.75569 * 11 10 9
13 13 C 1.53784 * 113.61000 * 174.99420 * 11 10 9
14 14 C 1.53785 * 87.07840 * 139.98204 * 13 11 10
15 15 C 1.53000 * 113.61173 * 89.20199 * 14 13 11
16 16 O 1.42902 * 113.61863 * 220.01937 * 14 13 11
17 17 C 1.53772 * 113.61606 * 272.49323 * 11 10 9
18 18 C 1.38437 * 120.99510 * 359.43484 * 8 7 6
19 19 C 1.40500 * 119.77000 * 0.27548 * 18 8 7
20 20 C 1.40949 * 120.56756 * 179.97438 * 19 18 8
21 21 H 1.07997 * 119.99839 * 147.52647 * 20 19 18
22 22 C 1.40249 * 119.99788 * 327.53482 * 20 19 18
23 23 N 1.30634 * 120.00197 * 350.49377 * 22 20 19
24 24 Si 1.86801 * 119.99907 * 170.48990 * 22 20 19
25 25 H 1.48504 * 109.47044 * 359.97438 * 24 22 20
26 26 H 1.48503 * 109.46957 * 119.99709 * 24 22 20
27 27 H 1.48498 * 109.47208 * 240.00039 * 24 22 20
28 28 H 1.08993 * 109.47674 * 59.99593 * 1 2 3
29 29 H 1.08996 * 109.47179 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47053 * 299.99344 * 1 2 3
31 31 H 1.08000 * 119.93372 * 0.02562 * 6 5 3
32 32 H 1.08004 * 119.40474 * 180.27223 * 7 6 5
33 33 H 0.96999 * 119.99514 * 179.72472 * 9 8 7
34 34 H 1.09003 * 109.47479 * 59.99705 * 10 9 8
35 35 H 1.08998 * 109.47348 * 299.99642 * 10 9 8
36 36 H 1.09004 * 113.61597 * 25.44182 * 13 11 10
37 37 H 1.08995 * 113.61714 * 254.52864 * 13 11 10
38 38 H 1.08994 * 109.47303 * 59.99945 * 15 14 13
39 39 H 1.09001 * 109.47084 * 180.02562 * 15 14 13
40 40 H 1.09003 * 109.47164 * 299.99973 * 15 14 13
41 41 H 0.96696 * 114.00011 * 180.02562 * 16 14 13
42 42 H 1.09001 * 113.61173 * 105.47291 * 17 11 10
43 43 H 1.08998 * 113.69168 * 334.58429 * 17 11 10
44 44 H 1.08002 * 120.11529 * 180.30212 * 18 8 7
45 45 H 0.96995 * 120.00254 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0642 1.2015 0.0000
4 8 1.4021 2.2210 0.0005
5 6 3.5322 1.2784 -0.0006
6 6 4.3020 0.1203 0.1180
7 6 5.6777 0.2002 0.1113
8 6 6.3293 1.4276 -0.0009
9 7 7.7202 1.4678 0.0022
10 6 8.4886 0.2270 0.1289
11 6 9.9843 0.5486 0.1041
12 1 10.2428 1.4117 0.7176
13 6 10.8816 -0.6752 0.3532
14 6 11.8135 -0.1147 -0.7341
15 6 12.8798 0.8408 -0.1945
16 8 12.3528 -1.1169 -1.5983
17 6 10.5802 0.5989 -1.3125
18 6 5.6134 2.6064 -0.1212
19 6 4.2088 2.5723 -0.1250
20 6 3.4633 3.7623 -0.2460
21 1 2.5106 3.7533 -0.7546
22 6 3.9587 4.9581 0.2940
23 7 5.0126 4.9391 1.0657
24 14 3.1116 6.5780 -0.0904
25 1 1.9499 6.3299 -0.9815
26 1 2.6428 7.2033 1.1724
27 1 4.0690 7.4887 -0.7681
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5137 0.8901
31 1 3.8186 -0.8410 0.2106
32 1 6.2618 -0.7040 0.1994
33 1 8.1810 2.3175 -0.0795
34 1 8.2462 -0.4368 -0.7010
35 1 8.2372 -0.2616 1.0702
36 1 10.4142 -1.6218 0.0821
37 1 11.3304 -0.6926 1.3463
38 1 13.5034 0.3174 0.5301
39 1 13.4993 1.1963 -1.0179
40 1 12.3959 1.6898 0.2885
41 1 12.9400 -0.7705 -2.2840
42 1 10.7856 1.6100 -1.6641
43 1 10.0312 0.0012 -2.0401
44 1 6.1328 3.5489 -0.2122
45 1 5.3550 5.7661 1.4394
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001168345170.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:55
Heat of formation + Delta-G solvation = -119.254414 kcal
Electronic energy + Delta-G solvation = -26303.955469 eV
Core-core repulsion = 22478.719917 eV
Total energy + Delta-G solvation = -3825.235553 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 1.34 seconds
Orbital eigenvalues (eV)
-40.99531 -40.84886 -39.30716 -37.19626 -36.62230 -35.75582 -34.89961 -31.58626
-31.27189 -29.72883 -28.54868 -27.24475 -26.79607 -26.54048 -23.68113 -23.28432
-22.21625 -21.13737 -19.86326 -19.19103 -18.33886 -17.97878 -17.42073 -17.33112
-16.92150 -16.54717 -16.52828 -16.16901 -15.44720 -15.38813 -15.15661 -14.61149
-14.49723 -14.29948 -14.08044 -14.01849 -13.66661 -13.37343 -13.12570 -13.04233
-12.88817 -12.83233 -12.77125 -12.68434 -12.54348 -12.27820 -12.06488 -12.00086
-11.70598 -11.52420 -11.40672 -11.24168 -11.13794 -10.70896 -10.62130 -10.48065
-9.28392 -8.71651 -8.01477 -6.42630 0.51540 1.06828 1.35087 1.50239
1.52812 2.17723 2.21383 2.23238 2.70291 2.79711 3.30345 3.56455
3.60489 3.72018 3.81151 3.86915 4.25006 4.36002 4.41048 4.41650
4.46100 4.53659 4.59574 4.68650 4.77662 4.79388 4.81159 4.82994
4.88764 4.93785 5.06373 5.08949 5.14667 5.17551 5.28976 5.33153
5.46816 5.49307 5.66517 5.81159 5.91158 6.07146 6.11415 6.53850
6.83578 6.87010 6.91334 6.94143 7.14614 7.36613 8.27151
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.012917 B = 0.003187 C = 0.002626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2167.171109 B = 8784.911299 C =10660.066713
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.375 6.375
3 C 0.503 3.497
4 O -0.557 6.557
5 C -0.322 4.322
6 C 0.006 3.994
7 C -0.301 4.301
8 C 0.254 3.746
9 N -0.742 5.742
10 C 0.143 3.857
11 C -0.112 4.112
12 H 0.104 0.896
13 C -0.114 4.114
14 C 0.103 3.897
15 C -0.158 4.158
16 O -0.571 6.571
17 C -0.156 4.156
18 C -0.263 4.263
19 C 0.157 3.843
20 C -0.455 4.455
21 H 0.080 0.920
22 C 0.037 3.963
23 N -0.806 5.806
24 Si 0.979 3.021
25 H -0.270 1.270
26 H -0.265 1.265
27 H -0.252 1.252
28 H 0.051 0.949
29 H 0.134 0.866
30 H 0.050 0.950
31 H 0.127 0.873
32 H 0.124 0.876
33 H 0.397 0.603
34 H 0.053 0.947
35 H 0.055 0.945
36 H 0.084 0.916
37 H 0.086 0.914
38 H 0.069 0.931
39 H 0.075 0.925
40 H 0.073 0.927
41 H 0.390 0.610
42 H 0.074 0.926
43 H 0.078 0.922
44 H 0.108 0.892
45 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.175 -7.215 -1.875 15.138
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.293 6.293
3 C 0.356 3.644
4 O -0.451 6.451
5 C -0.326 4.326
6 C -0.013 4.013
7 C -0.323 4.323
8 C 0.150 3.850
9 N -0.371 5.371
10 C 0.019 3.981
11 C -0.131 4.131
12 H 0.122 0.878
13 C -0.152 4.152
14 C 0.062 3.938
15 C -0.215 4.215
16 O -0.380 6.380
17 C -0.194 4.194
18 C -0.288 4.288
19 C 0.153 3.847
20 C -0.483 4.483
21 H 0.098 0.902
22 C -0.180 4.180
23 N -0.431 5.431
24 Si 0.800 3.200
25 H -0.194 1.194
26 H -0.190 1.190
27 H -0.176 1.176
28 H 0.070 0.930
29 H 0.152 0.848
30 H 0.069 0.931
31 H 0.145 0.855
32 H 0.142 0.858
33 H 0.231 0.769
34 H 0.071 0.929
35 H 0.073 0.927
36 H 0.103 0.897
37 H 0.105 0.895
38 H 0.088 0.912
39 H 0.094 0.906
40 H 0.092 0.908
41 H 0.240 0.760
42 H 0.093 0.907
43 H 0.096 0.904
44 H 0.126 0.874
45 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 12.853 -7.409 -1.327 14.895
hybrid contribution -0.447 1.548 -0.385 1.656
sum 12.406 -5.861 -1.712 13.827
Atomic orbital electron populations
1.23353 0.76138 1.04965 1.01585 1.86546 1.23964 1.33130 1.85638
1.21333 0.89701 0.80615 0.72741 1.90695 1.67609 1.36554 1.50257
1.19959 0.87574 0.95654 1.29432 1.20872 0.93424 0.96078 0.90941
1.20155 0.93877 0.95716 1.22584 1.17824 0.83829 0.93511 0.89847
1.44547 1.01942 1.08980 1.81663 1.21257 0.89885 0.86500 1.00443
1.22493 0.92464 0.99803 0.98327 0.87774 1.23083 0.95594 0.97739
0.98796 1.22653 0.91437 0.88685 0.90985 1.22142 0.98111 0.98948
1.02335 1.86522 1.67793 1.36378 1.47282 1.23739 0.97670 1.01467
0.96484 1.20497 0.92976 0.95737 1.19577 1.18488 0.91864 0.90477
0.83893 1.20163 1.04990 0.92823 1.30316 0.90234 1.26789 0.94840
1.03890 0.92506 1.69776 1.20245 1.31062 1.22007 0.85202 0.79108
0.76404 0.79247 1.19408 1.18990 1.17608 0.92977 0.84803 0.93093
0.85518 0.85808 0.76867 0.92865 0.92713 0.89693 0.89539 0.91159
0.90643 0.90785 0.76010 0.90722 0.90385 0.87441 0.89841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.04 10.57 113.37 1.20 2.24 16
2 O -0.37 -15.64 9.85 -57.57 -0.57 -16.21 16
3 C 0.50 25.72 7.85 70.12 0.55 26.27 16
4 O -0.56 -31.32 13.55 19.62 0.27 -31.06 16
5 C -0.32 -16.88 6.07 -18.49 -0.11 -16.99 16
6 C 0.01 0.26 9.60 22.49 0.22 0.48 16
7 C -0.30 -12.54 9.24 22.45 0.21 -12.33 16
8 C 0.25 11.04 6.63 38.31 0.25 11.29 16
9 N -0.74 -24.93 5.71 -339.84 -1.94 -26.86 16
10 C 0.14 3.76 4.71 86.38 0.41 4.16 16
11 C -0.11 -2.22 3.41 -10.27 -0.03 -2.26 16
12 H 0.10 1.95 7.66 -2.39 -0.02 1.93 16
13 C -0.11 -2.05 7.06 31.12 0.22 -1.83 16
14 C 0.10 1.70 1.94 -10.27 -0.02 1.68 16
15 C -0.16 -1.93 9.32 71.98 0.67 -1.26 16
16 O -0.57 -10.13 13.49 -148.98 -2.01 -12.14 16
17 C -0.16 -2.94 7.03 31.12 0.22 -2.73 16
18 C -0.26 -13.45 8.46 22.87 0.19 -13.26 16
19 C 0.16 8.83 5.67 -19.90 -0.11 8.72 16
20 C -0.45 -26.26 7.85 23.42 0.18 -26.08 16
21 H 0.08 4.85 5.96 -2.91 -0.02 4.83 16
22 C 0.04 1.91 5.26 85.36 0.45 2.36 16
23 N -0.81 -41.85 11.05 21.88 0.24 -41.61 16
24 Si 0.98 40.70 29.57 68.60 2.03 42.73 16
25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16
26 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16
27 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16
28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16
29 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16
30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
31 H 0.13 4.93 7.63 -2.91 -0.02 4.91 16
32 H 0.12 4.37 6.58 -2.91 -0.02 4.35 16
33 H 0.40 12.60 8.46 -92.71 -0.78 11.82 16
34 H 0.05 1.44 7.60 -2.39 -0.02 1.42 16
35 H 0.05 1.46 7.91 -2.39 -0.02 1.45 16
36 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16
37 H 0.09 1.35 8.10 -2.39 -0.02 1.33 16
38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16
39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
40 H 0.07 0.89 7.35 -2.39 -0.02 0.88 16
41 H 0.39 3.77 9.04 -74.06 -0.67 3.10 16
42 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16
43 H 0.08 1.70 7.90 -2.39 -0.02 1.68 16
44 H 0.11 5.65 6.49 -2.91 -0.02 5.63 16
45 H 0.29 13.46 8.29 -92.71 -0.77 12.69 16
Total: -1.00 -69.87 371.08 2.08 -67.79
By element:
Atomic # 1 Polarization: 37.34 SS G_CDS: -0.43 Total: 36.91 kcal
Atomic # 6 Polarization: -24.04 SS G_CDS: 4.49 Total: -19.55 kcal
Atomic # 7 Polarization: -66.77 SS G_CDS: -1.70 Total: -68.47 kcal
Atomic # 8 Polarization: -57.10 SS G_CDS: -2.31 Total: -59.41 kcal
Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal
Total: -69.87 2.08 -67.79 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168345170.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.467 kcal
(2) G-P(sol) polarization free energy of solvation -69.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.337 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.34 seconds