Wall clock time and date at job start Tue Mar 31 2020 12:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38263 * 119.93968 * 2 1 4 4 C 1.38149 * 120.05138 * 179.97438 * 3 2 1 5 5 C 1.38728 * 119.94378 * 0.02562 * 4 3 2 6 6 O 1.35904 * 120.05152 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99932 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47368 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47105 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46965 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00171 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99842 * 180.02562 * 10 9 8 13 13 C 1.47584 * 134.49098 * 179.97438 * 12 10 9 14 14 C 1.53947 * 86.11565 * 155.35611 * 13 12 10 15 15 O 1.42899 * 113.73966 * 269.25861 * 14 13 12 16 16 C 1.50697 * 113.73728 * 137.95278 * 14 13 12 17 17 H 1.08000 * 120.00521 * 359.97438 * 16 14 13 18 18 C 1.37881 * 119.99910 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99824 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00457 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47090 * 59.99825 * 20 18 16 22 22 H 1.48500 * 109.47260 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47307 * 300.00349 * 20 18 16 24 24 C 1.47576 * 134.49404 * 359.97438 * 12 10 9 25 25 C 1.38725 * 119.88947 * 0.27668 * 5 4 3 26 26 C 1.38142 * 119.94409 * 359.42370 * 25 5 4 27 27 H 1.08996 * 109.47368 * 90.00212 * 1 2 3 28 28 H 1.09007 * 109.46901 * 209.99828 * 1 2 3 29 29 H 1.08997 * 109.47053 * 329.99631 * 1 2 3 30 30 H 1.08002 * 119.97672 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.02627 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47216 * 60.00220 * 7 6 5 33 33 H 1.09002 * 109.46983 * 300.00244 * 7 6 5 34 34 H 1.09000 * 109.47530 * 59.99938 * 8 7 6 35 35 H 1.09002 * 109.47005 * 299.99909 * 8 7 6 36 36 H 1.08998 * 109.47574 * 59.99839 * 9 8 7 37 37 H 1.09001 * 109.47249 * 299.99306 * 9 8 7 38 38 H 1.09001 * 113.76908 * 41.05531 * 13 12 10 39 39 H 1.08997 * 113.76763 * 269.65793 * 13 12 10 40 40 H 0.96703 * 113.99221 * 180.02562 * 15 14 13 41 41 H 0.97003 * 120.00094 * 180.02562 * 19 18 16 42 42 H 1.09003 * 113.77250 * 90.33955 * 24 12 10 43 43 H 1.09001 * 113.87174 * 318.95113 * 24 12 10 44 44 H 1.08008 * 120.02626 * 179.72621 * 25 5 4 45 45 H 1.08003 * 119.97419 * 180.27914 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0002 0.0005 7 6 6.2812 -1.2730 0.0000 8 6 7.7980 -1.0726 0.0007 9 6 8.4926 -2.4358 -0.0006 10 6 9.9867 -2.2383 0.0008 11 8 10.4502 -1.1175 0.0021 12 7 10.8077 -3.3071 -0.0005 13 6 12.2726 -3.4860 -0.0003 14 6 11.9997 -4.8600 0.6381 15 8 11.9801 -4.8370 2.0667 16 6 12.8526 -5.9692 0.0783 17 1 13.5719 -5.7576 -0.6991 18 6 12.7147 -7.2543 0.5585 19 7 11.8385 -7.5121 1.5047 20 14 13.7713 -8.6294 -0.1358 21 1 15.2049 -8.3141 0.0896 22 1 13.4319 -9.9056 0.5434 23 1 13.5169 -8.7617 -1.5929 24 6 10.6029 -4.7686 -0.0027 25 6 3.5786 -1.2007 -0.0058 26 6 2.1972 -1.1980 -0.0001 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6557 2.1326 -0.0004 31 1 4.1172 2.1369 0.0001 32 1 5.9884 -1.8297 -0.8903 33 1 5.9883 -1.8305 0.8897 34 1 8.0906 -0.5161 0.8911 35 1 8.0912 -0.5150 -0.8888 36 1 8.2001 -2.9919 -0.8912 37 1 8.1996 -2.9938 0.8888 38 1 12.7997 -2.7935 0.6561 39 1 12.7083 -3.5437 -0.9977 40 1 11.8093 -5.6984 2.4716 41 1 11.7417 -8.4161 1.8429 42 1 10.5481 -5.2031 -1.0009 43 1 9.7970 -5.1021 0.6511 44 1 4.1173 -2.1368 -0.0103 45 1 1.6558 -2.1326 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256346805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:07 Heat of formation + Delta-G solvation = -78.109035 kcal Electronic energy + Delta-G solvation = -25410.529741 eV Core-core repulsion = 21587.078386 eV Total energy + Delta-G solvation = -3823.451355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.35593 -39.55096 -38.04865 -37.42988 -33.99781 -33.82931 -32.23512 -32.04603 -31.26304 -29.16721 -27.38383 -26.23004 -25.29142 -25.07741 -23.27074 -21.77844 -21.15368 -19.98860 -18.54459 -18.06763 -17.44073 -16.53985 -16.47763 -15.92691 -15.60145 -15.39170 -15.16093 -14.89702 -14.54253 -14.20265 -14.05600 -13.75824 -13.72647 -13.60862 -13.03024 -12.69652 -12.49717 -12.33211 -12.22529 -12.05328 -11.87699 -11.73141 -11.60068 -11.52979 -11.21493 -11.10391 -11.06241 -10.89390 -10.62618 -10.57061 -10.32054 -9.67488 -9.25080 -9.22256 -8.80283 -8.44909 -8.25296 -7.87330 -6.43201 -4.53733 1.09570 1.18576 2.93306 3.13458 3.17045 3.19598 3.22416 3.50732 3.60568 4.15328 4.51382 4.60048 4.69933 4.73736 4.81008 4.81915 4.95324 5.02875 5.09449 5.14270 5.29527 5.30480 5.34556 5.39248 5.46897 5.57182 5.64002 5.67353 5.79565 5.93622 6.04613 6.05698 6.13416 6.15393 6.25757 6.35128 6.35458 6.47574 6.56714 6.59990 6.64945 7.06873 7.26169 7.59427 7.77576 8.46526 8.49433 8.72531 9.17646 9.42726 10.63215 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.001965 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.238189 B =14246.067710 C =15082.285561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.082 4.082 4 C -0.151 4.151 5 C 0.129 3.871 6 O -0.313 6.313 7 C 0.060 3.940 8 C -0.101 4.101 9 C -0.130 4.130 10 C 0.528 3.472 11 O -0.565 6.565 12 N -0.633 5.633 13 C 0.111 3.889 14 C 0.238 3.762 15 O -0.573 6.573 16 C -0.537 4.537 17 H 0.071 0.929 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.076 3.924 25 C -0.206 4.206 26 C -0.080 4.080 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.393 0.607 41 H 0.274 0.726 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.129 0.871 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.315 8.688 -3.327 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.100 4.100 4 C -0.170 4.170 5 C 0.084 3.916 6 O -0.226 6.226 7 C -0.015 4.015 8 C -0.139 4.139 9 C -0.170 4.170 10 C 0.318 3.682 11 O -0.445 6.445 12 N -0.366 5.366 13 C -0.011 4.011 14 C 0.197 3.803 15 O -0.386 6.386 16 C -0.575 4.575 17 H 0.089 0.911 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.046 4.046 25 C -0.225 4.225 26 C -0.098 4.098 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.249 0.751 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.147 0.853 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.014 10.054 -3.291 21.759 hybrid contribution 0.259 -1.781 -0.301 1.825 sum -18.755 8.273 -3.592 20.810 Atomic orbital electron populations 1.20708 0.91160 1.02567 1.02067 1.19825 0.96184 0.93098 1.04092 1.20835 0.92967 0.97734 0.98449 1.20458 0.93773 0.96440 1.06299 1.19063 0.82609 0.94139 0.95811 1.86079 1.16012 1.32330 1.88215 1.22889 0.93434 0.83666 1.01489 1.21217 0.90309 0.97132 1.05228 1.21414 0.92846 0.98293 1.04489 1.20028 0.88128 0.83586 0.76478 1.90646 1.77910 1.23482 1.52498 1.50183 1.08818 1.07028 1.70615 1.23464 0.80178 0.97440 1.00040 1.19838 0.89661 0.90507 0.80343 1.86060 1.94529 1.39055 1.18944 1.21481 1.22101 0.92271 1.21683 0.91073 1.25075 0.94658 0.98994 0.94331 1.69304 1.34520 1.22247 1.27869 0.86379 0.80673 0.80201 0.79212 1.19822 1.20994 1.19900 1.24318 1.03083 0.76196 1.01039 1.21311 0.95399 0.97304 1.08466 1.20836 0.93298 0.97697 0.97975 0.91513 0.91761 0.91746 0.85516 0.85169 0.91873 0.91786 0.89993 0.90117 0.89094 0.88875 0.91157 0.89690 0.75142 0.91560 0.90017 0.91350 0.85287 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.13 -1.14 5.88 -104.60 -0.62 -1.76 16 3 C -0.08 -0.73 9.69 -39.60 -0.38 -1.11 16 4 C -0.15 -1.58 9.99 -39.43 -0.39 -1.98 16 5 C 0.13 1.52 6.69 -39.22 -0.26 1.26 16 6 O -0.31 -4.03 10.14 -19.44 -0.20 -4.23 16 7 C 0.06 0.67 4.74 37.15 0.18 0.85 16 8 C -0.10 -1.35 4.87 -26.73 -0.13 -1.48 16 9 C -0.13 -1.86 5.45 -27.88 -0.15 -2.01 16 10 C 0.53 10.34 8.06 -10.98 -0.09 10.26 16 11 O -0.56 -12.77 16.71 5.55 0.09 -12.67 16 12 N -0.63 -13.06 3.61 -178.31 -0.64 -13.70 16 13 C 0.11 2.39 8.22 -2.97 -0.02 2.37 16 14 C 0.24 5.59 1.45 -90.84 -0.13 5.46 16 15 O -0.57 -14.52 13.50 -35.23 -0.48 -14.99 16 16 C -0.54 -13.18 8.62 -34.44 -0.30 -13.47 16 17 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 19 N -0.90 -22.21 11.08 55.43 0.61 -21.60 16 20 Si 0.91 19.06 29.54 -169.99 -5.02 14.04 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 C 0.08 1.57 8.00 -2.98 -0.02 1.55 16 25 C -0.21 -2.13 9.04 -39.44 -0.36 -2.49 16 26 C -0.08 -0.73 9.69 -39.61 -0.38 -1.12 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.34 8.08 -51.92 -0.42 -0.08 16 29 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 33 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 34 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 40 H 0.39 10.01 6.42 45.56 0.29 10.30 16 41 H 0.27 6.46 8.31 -40.82 -0.34 6.13 16 42 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 45 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -28.97 379.29 -9.00 -37.97 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.28 Total: 11.79 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.80 Total: -2.32 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.03 Total: -35.30 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.58 Total: -31.90 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.97 -9.00 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256346805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.138 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds