Wall clock time and date at job start Tue Mar 31 2020 12:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38263 * 119.93968 * 2 1 4 4 C 1.38149 * 120.05138 * 179.97438 * 3 2 1 5 5 C 1.38728 * 119.94378 * 0.02562 * 4 3 2 6 6 O 1.35904 * 120.05152 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99932 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47368 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47105 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46965 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00171 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99842 * 180.02562 * 10 9 8 13 13 C 1.47584 * 134.49098 * 179.97438 * 12 10 9 14 14 C 1.53947 * 86.11565 * 155.35611 * 13 12 10 15 15 O 1.42899 * 113.73966 * 269.25861 * 14 13 12 16 16 C 1.50697 * 113.73728 * 137.95278 * 14 13 12 17 17 H 1.08000 * 120.00521 * 359.97438 * 16 14 13 18 18 C 1.37881 * 119.99910 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99824 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00457 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47090 * 59.99825 * 20 18 16 22 22 H 1.48500 * 109.47260 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47307 * 300.00349 * 20 18 16 24 24 C 1.47576 * 134.49404 * 359.97438 * 12 10 9 25 25 C 1.38725 * 119.88947 * 0.27668 * 5 4 3 26 26 C 1.38142 * 119.94409 * 359.42370 * 25 5 4 27 27 H 1.08996 * 109.47368 * 90.00212 * 1 2 3 28 28 H 1.09007 * 109.46901 * 209.99828 * 1 2 3 29 29 H 1.08997 * 109.47053 * 329.99631 * 1 2 3 30 30 H 1.08002 * 119.97672 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.02627 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47216 * 60.00220 * 7 6 5 33 33 H 1.09002 * 109.46983 * 300.00244 * 7 6 5 34 34 H 1.09000 * 109.47530 * 59.99938 * 8 7 6 35 35 H 1.09002 * 109.47005 * 299.99909 * 8 7 6 36 36 H 1.08998 * 109.47574 * 59.99839 * 9 8 7 37 37 H 1.09001 * 109.47249 * 299.99306 * 9 8 7 38 38 H 1.09001 * 113.76908 * 41.05531 * 13 12 10 39 39 H 1.08997 * 113.76763 * 269.65793 * 13 12 10 40 40 H 0.96703 * 113.99221 * 180.02562 * 15 14 13 41 41 H 0.97003 * 120.00094 * 180.02562 * 19 18 16 42 42 H 1.09003 * 113.77250 * 90.33955 * 24 12 10 43 43 H 1.09001 * 113.87174 * 318.95113 * 24 12 10 44 44 H 1.08008 * 120.02626 * 179.72621 * 25 5 4 45 45 H 1.08003 * 119.97419 * 180.27914 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0002 0.0005 7 6 6.2812 -1.2730 0.0000 8 6 7.7980 -1.0726 0.0007 9 6 8.4926 -2.4358 -0.0006 10 6 9.9867 -2.2383 0.0008 11 8 10.4502 -1.1175 0.0021 12 7 10.8077 -3.3071 -0.0005 13 6 12.2726 -3.4860 -0.0003 14 6 11.9997 -4.8600 0.6381 15 8 11.9801 -4.8370 2.0667 16 6 12.8526 -5.9692 0.0783 17 1 13.5719 -5.7576 -0.6991 18 6 12.7147 -7.2543 0.5585 19 7 11.8385 -7.5121 1.5047 20 14 13.7713 -8.6294 -0.1358 21 1 15.2049 -8.3141 0.0896 22 1 13.4319 -9.9056 0.5434 23 1 13.5169 -8.7617 -1.5929 24 6 10.6029 -4.7686 -0.0027 25 6 3.5786 -1.2007 -0.0058 26 6 2.1972 -1.1980 -0.0001 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6557 2.1326 -0.0004 31 1 4.1172 2.1369 0.0001 32 1 5.9884 -1.8297 -0.8903 33 1 5.9883 -1.8305 0.8897 34 1 8.0906 -0.5161 0.8911 35 1 8.0912 -0.5150 -0.8888 36 1 8.2001 -2.9919 -0.8912 37 1 8.1996 -2.9938 0.8888 38 1 12.7997 -2.7935 0.6561 39 1 12.7083 -3.5437 -0.9977 40 1 11.8093 -5.6984 2.4716 41 1 11.7417 -8.4161 1.8429 42 1 10.5481 -5.2031 -1.0009 43 1 9.7970 -5.1021 0.6511 44 1 4.1173 -2.1368 -0.0103 45 1 1.6558 -2.1326 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256346805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:06 Heat of formation + Delta-G solvation = -95.368804 kcal Electronic energy + Delta-G solvation = -25411.278181 eV Core-core repulsion = 21587.078386 eV Total energy + Delta-G solvation = -3824.199795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27904 -41.04901 -39.25851 -38.66765 -35.82511 -34.95087 -34.12454 -32.75364 -31.96494 -30.72725 -28.59176 -27.18484 -26.98939 -26.45767 -24.15487 -22.71246 -21.96464 -21.60903 -19.95419 -19.33081 -19.02417 -17.97598 -17.47944 -17.24998 -16.91278 -16.55243 -16.43900 -16.17393 -15.91382 -15.32120 -15.22793 -14.80782 -14.49245 -14.43959 -14.39497 -14.22154 -13.88527 -13.70936 -13.40964 -13.20707 -12.98475 -12.94001 -12.81571 -12.75215 -12.44275 -12.38698 -12.24635 -12.20781 -12.15927 -11.65762 -11.52315 -11.40906 -10.94514 -10.63157 -10.24093 -9.95839 -9.57546 -8.99497 -8.26436 -6.43319 0.38923 0.45753 1.48366 1.50849 1.57556 1.63375 1.83800 2.28873 2.41530 2.79547 2.96165 3.42335 3.75980 3.84393 3.85968 3.94339 3.99920 4.09853 4.10984 4.20755 4.33300 4.34613 4.41660 4.46401 4.48607 4.54133 4.61284 4.68342 4.82626 4.84807 4.89739 4.92526 4.96526 4.98358 5.10412 5.14654 5.21379 5.26006 5.38489 5.41839 5.69579 5.73267 5.89487 5.92654 6.46224 6.61778 6.86609 7.13694 7.30444 7.48036 8.79081 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.001965 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.238189 B =14246.067710 C =15082.285561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.086 4.086 4 C -0.167 4.167 5 C 0.102 3.898 6 O -0.335 6.335 7 C 0.065 3.935 8 C -0.093 4.093 9 C -0.119 4.119 10 C 0.520 3.480 11 O -0.601 6.601 12 N -0.636 5.636 13 C 0.108 3.892 14 C 0.216 3.784 15 O -0.588 6.588 16 C -0.556 4.556 17 H 0.071 0.929 18 C 0.034 3.966 19 N -0.915 5.915 20 Si 0.967 3.033 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.267 1.267 24 C 0.093 3.907 25 C -0.214 4.214 26 C -0.088 4.088 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.389 0.611 41 H 0.276 0.724 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.413 7.659 -4.166 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.186 4.186 5 C 0.057 3.943 6 O -0.250 6.250 7 C -0.009 4.009 8 C -0.131 4.131 9 C -0.158 4.158 10 C 0.311 3.689 11 O -0.484 6.484 12 N -0.369 5.369 13 C -0.015 4.015 14 C 0.175 3.825 15 O -0.401 6.401 16 C -0.594 4.594 17 H 0.089 0.911 18 C -0.167 4.167 19 N -0.556 5.556 20 Si 0.793 3.207 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.192 1.192 24 C -0.029 4.029 25 C -0.233 4.233 26 C -0.106 4.106 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.167 0.833 31 H 0.149 0.851 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.244 0.756 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.158 0.842 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.131 9.029 -4.137 23.348 hybrid contribution 0.893 -1.397 -0.011 1.659 sum -20.237 7.631 -4.147 22.022 Atomic orbital electron populations 1.20762 0.89146 1.03564 1.02914 1.20228 0.97748 0.92834 1.02674 1.21145 0.92419 0.99043 0.97736 1.20686 0.94717 0.96359 1.06831 1.19325 0.82164 0.95212 0.97618 1.86023 1.16998 1.33132 1.88844 1.22827 0.91528 0.83559 1.03009 1.21085 0.92137 0.96295 1.03632 1.21413 0.88622 0.99205 1.06570 1.20982 0.90130 0.82617 0.75122 1.90627 1.78996 1.24808 1.53969 1.50237 1.08371 1.07448 1.70870 1.23463 0.81293 0.96294 1.00436 1.20142 0.91660 0.91191 0.79505 1.86047 1.94787 1.38860 1.20395 1.21700 1.22682 0.92983 1.22078 0.91065 1.25726 0.95597 1.00771 0.94590 1.69362 1.35201 1.22702 1.28336 0.85458 0.78802 0.77652 0.78820 1.20216 1.20779 1.19198 1.24113 1.01351 0.76011 1.01423 1.21509 0.96116 0.97222 1.08409 1.21166 0.93039 0.98903 0.97494 0.90624 0.90875 0.90722 0.83295 0.85104 0.90019 0.90490 0.92010 0.91417 0.86201 0.87261 0.92665 0.88081 0.75603 0.91369 0.88670 0.90825 0.84221 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 71.24 0.71 -0.29 16 2 C -0.13 -2.06 5.88 -19.85 -0.12 -2.18 16 3 C -0.09 -1.40 9.69 22.25 0.22 -1.18 16 4 C -0.17 -3.46 9.99 22.37 0.22 -3.24 16 5 C 0.10 2.35 6.69 22.50 0.15 2.50 16 6 O -0.34 -8.62 10.14 -92.47 -0.94 -9.56 16 7 C 0.07 1.39 4.74 71.98 0.34 1.73 16 8 C -0.09 -2.46 4.87 30.59 0.15 -2.31 16 9 C -0.12 -3.19 5.45 29.85 0.16 -3.03 16 10 C 0.52 20.10 8.06 87.66 0.71 20.81 16 11 O -0.60 -27.55 16.71 -3.04 -0.05 -27.60 16 12 N -0.64 -25.86 3.61 -840.27 -3.03 -28.89 16 13 C 0.11 4.67 8.22 86.48 0.71 5.38 16 14 C 0.22 10.11 1.45 -10.88 -0.02 10.10 16 15 O -0.59 -30.11 13.50 -148.98 -2.01 -32.12 16 16 C -0.56 -27.03 8.62 25.60 0.22 -26.81 16 17 H 0.07 3.37 7.81 -2.91 -0.02 3.34 16 18 C 0.03 1.62 5.39 84.66 0.46 2.07 16 19 N -0.92 -44.66 11.08 21.45 0.24 -44.43 16 20 Si 0.97 38.33 29.54 68.60 2.03 40.36 16 21 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 24 C 0.09 3.73 8.00 86.48 0.69 4.42 16 25 C -0.21 -4.13 9.04 22.36 0.20 -3.93 16 26 C -0.09 -1.44 9.69 22.25 0.22 -1.22 16 27 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.57 8.08 -2.38 -0.02 0.55 16 29 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 30 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.08 1.42 7.65 -2.39 -0.02 1.40 16 33 H 0.08 1.42 7.67 -2.39 -0.02 1.40 16 34 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 35 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 36 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.10 3.98 8.09 -2.39 -0.02 3.96 16 40 H 0.39 20.04 6.42 -74.05 -0.48 19.56 16 41 H 0.28 12.82 8.31 -92.71 -0.77 12.05 16 42 H 0.10 3.54 8.09 -2.39 -0.02 3.52 16 43 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.14 2.25 6.30 -2.91 -0.02 2.24 16 45 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -62.24 379.29 1.78 -60.46 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: 0.51 Total: 38.95 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.03 Total: 2.82 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -2.79 Total: -73.31 kcal Atomic # 8 Polarization: -66.28 SS G_CDS: -3.00 Total: -69.28 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -62.24 1.78 -60.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256346805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.908 kcal (2) G-P(sol) polarization free energy of solvation -62.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds