Wall clock time and date at job start Tue Mar 31 2020 13:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46790 * 2 1 4 4 C 1.53001 * 112.99776 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46967 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00030 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00213 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00469 * 180.02562 * 6 5 4 9 9 C 1.50690 * 109.47448 * 180.02562 * 8 6 5 10 10 C 1.38327 * 119.96186 * 269.72348 * 9 8 6 11 11 C 1.38283 * 120.13560 * 179.76743 * 10 9 8 12 12 C 1.38123 * 120.06828 * 0.50706 * 11 10 9 13 13 C 1.38853 * 119.93261 * 359.74863 * 12 11 10 14 14 O 1.35747 * 120.07205 * 179.97438 * 13 12 11 15 15 C 1.34834 * 117.00018 * 354.48437 * 14 13 12 16 16 H 1.07998 * 119.99406 * 5.05991 * 15 14 13 17 17 C 1.38655 * 120.00285 * 185.06119 * 15 14 13 18 18 N 1.31551 * 120.00178 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99707 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47322 * 90.00046 * 19 17 15 21 21 H 1.48505 * 109.46928 * 210.00141 * 19 17 15 22 22 H 1.48508 * 109.47442 * 329.99904 * 19 17 15 23 23 C 1.38077 * 119.97099 * 89.99881 * 9 8 6 24 24 C 1.54038 * 113.81633 * 48.17685 * 3 2 1 25 25 O 1.44439 * 85.42730 * 223.23353 * 24 3 2 26 26 C 1.44184 * 93.38112 * 24.08791 * 25 24 3 27 27 H 1.08996 * 109.47538 * 299.99303 * 1 2 3 28 28 H 1.09006 * 109.47507 * 60.00042 * 1 2 3 29 29 H 1.09003 * 109.46823 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47166 * 240.01137 * 2 1 3 31 31 H 1.08993 * 109.47549 * 120.00277 * 2 1 3 32 32 H 1.08996 * 109.47847 * 300.00431 * 4 3 2 33 33 H 1.09007 * 109.46780 * 60.00773 * 4 3 2 34 34 H 0.97001 * 120.00121 * 0.02562 * 5 4 3 35 35 H 1.08996 * 109.46628 * 300.00599 * 8 6 5 36 36 H 1.08995 * 109.46548 * 59.99661 * 8 6 5 37 37 H 1.07999 * 119.93584 * 359.97438 * 10 9 8 38 38 H 1.08003 * 119.96561 * 180.25641 * 11 10 9 39 39 H 1.08007 * 120.03486 * 179.72070 * 12 11 10 40 40 H 0.96997 * 120.00262 * 180.02562 * 18 17 15 41 41 H 1.08006 * 120.02876 * 359.95797 * 23 9 8 42 42 H 1.09000 * 113.86307 * 337.34147 * 24 3 2 43 43 H 1.08999 * 113.86486 * 109.04244 * 24 3 2 44 44 H 1.08993 * 113.86310 * 221.76818 * 26 25 24 45 45 H 1.08995 * 113.86398 * 90.06144 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5670 1.5367 0.0006 5 7 3.9694 2.9454 0.0000 6 6 5.2767 3.2729 -0.0002 7 8 6.1202 2.4014 -0.0002 8 6 5.6907 4.7219 -0.0003 9 6 7.1948 4.8147 -0.0010 10 6 7.8845 4.8629 1.1970 11 6 9.2650 4.9433 1.2005 12 6 9.9588 4.9862 0.0069 13 6 9.2689 4.9433 -1.1973 14 8 9.9479 4.9858 -2.3721 15 6 11.2797 5.1845 -2.3025 16 1 11.7708 5.2198 -1.3413 17 6 12.0186 5.3436 -3.4650 18 7 13.3180 5.5371 -3.3971 19 14 11.1688 5.2833 -5.1274 20 1 10.7347 6.6505 -5.5114 21 1 12.1126 4.7589 -6.1469 22 1 9.9834 4.3924 -5.0454 23 6 7.8826 4.8573 -1.1975 24 6 1.3612 2.3422 1.0502 25 8 1.3052 3.3305 -0.0017 26 6 1.3612 2.3423 -1.0500 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.9611 1.0464 0.8907 33 1 3.9616 1.0462 -0.8893 34 1 3.2948 3.6425 -0.0004 35 1 5.2963 5.2123 -0.8902 36 1 5.2965 5.2124 0.8897 37 1 7.3441 4.8344 2.1316 38 1 9.8011 4.9766 2.1375 39 1 11.0368 5.0534 0.0103 40 1 13.8349 5.6487 -4.2103 41 1 7.3432 4.8234 -2.1326 42 1 0.3831 1.9842 1.3715 43 1 2.0107 2.6171 1.8813 44 1 2.0106 2.6173 -1.8810 45 1 0.3831 1.9844 -1.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361452559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:41 Heat of formation + Delta-G solvation = -74.044696 kcal Electronic energy + Delta-G solvation = -26187.396287 eV Core-core repulsion = 22364.121175 eV Total energy + Delta-G solvation = -3823.275112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.25656 -41.06638 -40.23943 -38.29945 -35.69781 -34.76871 -34.48500 -33.52280 -31.13602 -30.30499 -28.39221 -27.59116 -27.20244 -26.24267 -24.28256 -23.34135 -22.53521 -21.42962 -19.80026 -19.56262 -18.86179 -18.15851 -17.29774 -17.29376 -16.88364 -16.79488 -16.74307 -16.24095 -16.06805 -15.74142 -15.63387 -15.05086 -14.82051 -14.76358 -14.51432 -14.34724 -14.13906 -14.06298 -13.92129 -13.22968 -13.04762 -12.82248 -12.78565 -12.54465 -12.45679 -12.36928 -12.27954 -12.24319 -11.93645 -11.49743 -11.31924 -11.31574 -10.95681 -10.87869 -10.47172 -10.07771 -9.67438 -9.07049 -8.50632 -6.23367 0.48151 0.69523 1.28964 1.33772 1.50546 1.68146 2.18528 2.27462 2.71034 2.81544 3.04373 3.08231 3.15252 3.53497 3.76660 3.96883 4.06704 4.11808 4.15558 4.20102 4.28933 4.41055 4.52583 4.53754 4.54980 4.56920 4.63722 4.66965 4.68440 4.69980 4.75240 4.96502 4.99702 5.05070 5.12779 5.22756 5.24476 5.25025 5.38807 5.44970 5.50169 5.64571 5.72014 5.76157 5.91019 6.24354 6.60448 6.83575 7.31312 7.58514 8.61182 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.002495 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.329275 B =11218.359590 C =11964.294880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.132 4.132 4 C 0.140 3.860 5 N -0.719 5.719 6 C 0.513 3.487 7 O -0.579 6.579 8 C -0.091 4.091 9 C -0.027 4.027 10 C -0.171 4.171 11 C -0.077 4.077 12 C -0.241 4.241 13 C 0.119 3.881 14 O -0.247 6.247 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.009 3.991 18 N -0.923 5.923 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.268 1.268 23 C -0.182 4.182 24 C 0.040 3.960 25 O -0.398 6.398 26 C 0.037 3.963 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.108 0.892 40 H 0.285 0.715 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.766 -7.352 9.285 33.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.133 4.133 4 C 0.016 3.984 5 N -0.377 5.377 6 C 0.300 3.700 7 O -0.458 6.458 8 C -0.131 4.131 9 C -0.027 4.027 10 C -0.190 4.190 11 C -0.095 4.095 12 C -0.260 4.260 13 C 0.070 3.930 14 O -0.155 6.155 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.192 1.192 23 C -0.201 4.201 24 C -0.036 4.036 25 O -0.317 6.317 26 C -0.039 4.039 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.259 0.741 35 H 0.141 0.859 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.126 0.874 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -31.099 -7.670 8.951 33.258 hybrid contribution 0.680 0.020 -0.686 0.966 sum -30.419 -7.650 8.265 32.437 Atomic orbital electron populations 1.21982 0.94187 1.02746 1.02565 1.21396 0.96978 0.93239 1.03350 1.23793 0.93902 0.98302 0.97276 1.21016 0.92656 0.82576 1.02165 1.46146 1.07044 1.09349 1.75184 1.20905 0.82366 0.91618 0.75102 1.90753 1.52274 1.52221 1.50578 1.20684 0.91249 0.93211 1.07922 1.19199 0.95020 0.96712 0.91819 1.21012 0.93666 1.06338 0.97958 1.21117 0.94916 0.96706 0.96771 1.21324 1.00284 1.11116 0.93251 1.19581 0.92421 0.95338 0.85627 1.83507 1.21303 1.82479 1.28196 1.20719 0.79671 1.50881 0.96356 0.90253 1.25287 0.95534 0.95450 1.02658 1.69726 1.06382 1.49020 1.31285 0.85211 0.78492 0.79537 0.77398 1.18670 1.19003 1.19209 1.20265 0.90154 1.10479 0.99241 1.24444 1.01428 0.85845 0.91920 1.89602 1.95480 1.28707 1.17896 1.24379 1.01359 0.86153 0.92023 0.91606 0.91884 0.91688 0.91105 0.90713 0.91398 0.92126 0.74086 0.85905 0.84235 0.83429 0.84083 0.87421 0.90553 0.86127 0.87369 0.88844 0.89452 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 9.14 71.98 0.66 -0.11 16 2 C -0.11 -0.83 5.71 30.59 0.17 -0.66 16 3 C -0.13 -1.34 1.38 -51.48 -0.07 -1.41 16 4 C 0.14 2.35 5.26 86.38 0.45 2.80 16 5 N -0.72 -13.31 5.10 -463.05 -2.36 -15.67 16 6 C 0.51 13.47 7.82 87.66 0.69 14.15 16 7 O -0.58 -21.59 16.03 -3.04 -0.05 -21.64 16 8 C -0.09 -2.07 5.83 29.10 0.17 -1.90 16 9 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 10 C -0.17 -5.61 9.70 22.30 0.22 -5.39 16 11 C -0.08 -2.90 10.04 22.25 0.22 -2.68 16 12 C -0.24 -11.45 9.17 22.39 0.21 -11.25 16 13 C 0.12 6.05 6.65 22.58 0.15 6.20 16 14 O -0.25 -14.31 8.59 -22.75 -0.20 -14.50 16 15 C -0.40 -24.76 9.95 67.92 0.68 -24.08 16 16 H 0.08 5.14 5.44 -2.91 -0.02 5.13 16 17 C 0.01 0.53 5.49 84.83 0.47 1.00 16 18 N -0.92 -56.84 13.96 21.61 0.30 -56.54 16 19 Si 0.97 47.27 28.62 68.60 1.96 49.24 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 23 C -0.18 -7.69 9.64 22.39 0.22 -7.47 16 24 C 0.04 0.36 7.75 72.30 0.56 0.92 16 25 O -0.40 -5.15 10.35 -148.98 -1.54 -6.69 16 26 C 0.04 0.38 7.74 72.30 0.56 0.94 16 27 H 0.07 0.25 6.07 -2.39 -0.01 0.23 16 28 H 0.06 0.28 6.07 -2.38 -0.01 0.26 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.42 6.18 5.83 -92.71 -0.54 5.64 16 35 H 0.12 2.27 8.08 -2.39 -0.02 2.25 16 36 H 0.14 2.08 8.08 -2.39 -0.02 2.06 16 37 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 39 H 0.11 5.56 5.64 -2.91 -0.02 5.55 16 40 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 41 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 42 H 0.11 0.60 5.83 -2.39 -0.01 0.58 16 43 H 0.09 0.85 8.10 -2.39 -0.02 0.83 16 44 H 0.09 1.00 8.10 -2.39 -0.02 0.98 16 45 H 0.11 0.72 5.83 -2.39 -0.01 0.71 16 Total: -1.00 -78.84 365.87 3.85 -74.99 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.48 Total: 20.76 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 5.26 Total: -29.94 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -2.06 Total: -72.21 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.79 Total: -42.84 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.96 Total: 49.24 kcal Total: -78.84 3.85 -74.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361452559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.946 kcal (2) G-P(sol) polarization free energy of solvation -78.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds