Wall clock time and date at job start Tue Mar 31 2020 12:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47312 * 2 1 4 4 O 1.42970 * 109.46982 * 120.00189 * 2 1 3 5 5 C 1.43086 * 113.77029 * 178.79332 * 4 2 1 6 6 C 1.53258 * 108.94350 * 302.02992 * 5 4 2 7 7 N 1.46504 * 109.57831 * 174.33547 * 6 5 4 8 8 C 1.34768 * 120.00255 * 154.99816 * 7 6 5 9 9 O 1.21280 * 120.00096 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00232 * 179.97438 * 8 7 6 11 11 H 1.09005 * 109.47075 * 42.23584 * 10 8 7 12 12 C 1.50706 * 109.47051 * 282.24020 * 10 8 7 13 13 H 1.08003 * 119.99404 * 305.01374 * 12 10 8 14 14 C 1.37869 * 120.00163 * 125.01737 * 12 10 8 15 15 N 1.31515 * 120.00043 * 188.22040 * 14 12 10 16 16 Si 1.86803 * 120.00109 * 8.21224 * 14 12 10 17 17 H 1.48497 * 109.47201 * 275.63318 * 16 14 12 18 18 H 1.48497 * 109.46847 * 35.63672 * 16 14 12 19 19 H 1.48503 * 109.46960 * 155.63121 * 16 14 12 20 20 C 1.50701 * 109.47346 * 162.23791 * 10 8 7 21 21 C 1.38237 * 120.00049 * 64.00949 * 20 10 8 22 22 C 1.38230 * 119.99840 * 179.81320 * 21 20 10 23 23 C 1.38241 * 119.99990 * 0.39141 * 22 21 20 24 24 C 1.38228 * 120.00111 * 359.85325 * 23 22 21 25 25 C 1.38236 * 119.99726 * 244.27861 * 20 10 8 26 26 C 1.53252 * 108.84705 * 54.52181 * 6 5 4 27 27 O 1.42966 * 109.46899 * 239.99756 * 2 1 3 28 28 H 1.09003 * 109.46522 * 300.00110 * 1 2 3 29 29 H 1.09003 * 109.46474 * 59.99918 * 1 2 3 30 30 H 1.08994 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46703 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46906 * 300.00072 * 3 2 1 33 33 H 1.08995 * 109.47165 * 59.99823 * 3 2 1 34 34 H 1.08994 * 109.56180 * 182.18928 * 5 4 2 35 35 H 1.08999 * 109.56224 * 61.86403 * 5 4 2 36 36 H 1.09007 * 109.57420 * 294.58807 * 6 5 4 37 37 H 0.97000 * 119.99208 * 334.99261 * 7 6 5 38 38 H 0.96999 * 120.00094 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.99799 * 359.97438 * 21 20 10 40 40 H 1.08000 * 119.99902 * 180.22590 * 22 21 20 41 41 H 1.08001 * 119.99826 * 179.84147 * 23 22 21 42 42 H 1.08003 * 120.00268 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00137 * 359.97403 * 25 20 10 44 44 H 1.09002 * 109.56138 * 65.31500 * 26 6 5 45 45 H 1.09005 * 109.56187 * 185.64011 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0066 -0.6740 1.1673 5 6 3.4332 -0.7516 1.2465 6 6 3.9624 -1.4692 0.0000 7 7 5.4271 -1.4375 0.0001 8 6 6.1216 -2.3825 -0.6640 9 8 5.5341 -3.2588 -1.2621 10 6 7.6282 -2.3495 -0.6645 11 1 7.9867 -2.1087 0.3364 12 6 8.1074 -1.3012 -1.6353 13 1 7.7816 -1.3293 -2.6647 14 6 8.9618 -0.3064 -1.2096 15 7 9.2520 0.6975 -2.0081 16 14 9.7068 -0.3842 0.5017 17 1 8.7535 0.1925 1.4834 18 1 9.9869 -1.7989 0.8557 19 1 10.9726 0.3920 0.5261 20 6 8.1601 -3.6976 -1.0778 21 6 7.9060 -4.1812 -2.3477 22 6 8.3971 -5.4160 -2.7280 23 6 9.1355 -6.1709 -1.8359 24 6 9.3853 -5.6896 -0.5644 25 6 8.8973 -4.4530 -0.1852 26 6 3.4332 -0.7516 -1.2464 27 8 2.0066 -0.6740 -1.1673 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.7193 -1.3096 2.1380 35 1 3.8513 0.2539 1.2937 36 1 3.6195 -2.5040 0.0012 37 1 5.8969 -0.7363 0.4780 38 1 9.8528 1.3976 -1.7084 39 1 7.3260 -3.5930 -3.0434 40 1 8.2017 -5.7922 -3.7214 41 1 9.5171 -7.1368 -2.1322 42 1 9.9618 -6.2795 0.1328 43 1 9.0925 -4.0769 0.8082 44 1 3.8513 0.2539 -1.2937 45 1 3.7194 -1.3098 -2.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361503819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:59 Heat of formation + Delta-G solvation = -107.627849 kcal Electronic energy + Delta-G solvation = -27670.997456 eV Core-core repulsion = 23846.266069 eV Total energy + Delta-G solvation = -3824.731387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.55324 -39.27243 -37.91968 -35.70281 -34.87066 -33.69313 -32.18774 -31.59597 -30.15713 -29.49916 -27.85059 -27.25373 -26.02499 -23.77696 -22.58067 -21.88442 -21.06250 -19.97623 -19.38156 -17.69359 -17.22443 -16.71882 -16.34060 -16.10691 -15.74994 -15.40572 -14.97695 -14.70347 -14.35629 -13.98319 -13.60673 -13.29824 -13.23459 -13.18201 -12.90775 -12.81962 -12.68991 -12.51285 -12.35574 -12.32246 -12.08436 -11.88175 -11.74099 -11.31085 -11.15862 -11.11670 -10.98664 -10.52925 -10.30412 -10.15597 -10.07737 -9.62800 -9.53630 -9.13905 -8.76505 -8.54606 -8.15925 -7.85889 -6.39295 -4.41501 2.11471 2.18434 3.01911 3.16757 3.18190 3.37740 3.45063 3.60168 3.93188 4.12034 4.57381 4.59465 4.69549 4.76490 4.83848 4.96396 5.09145 5.29739 5.43342 5.47330 5.51361 5.51671 5.55826 5.56270 5.64498 5.68685 5.79758 5.88703 5.95044 5.99737 6.06871 6.11472 6.21428 6.31371 6.37461 6.66070 6.70739 6.82849 7.00937 7.14177 7.19479 7.20618 7.23892 7.54712 7.75982 8.03414 8.20594 8.64754 8.99755 9.18186 10.71886 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.004256 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.073524 B = 6578.061215 C = 7717.502496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.260 3.740 3 C -0.207 4.207 4 O -0.382 6.382 5 C 0.050 3.950 6 C 0.084 3.916 7 N -0.724 5.724 8 C 0.534 3.466 9 O -0.553 6.553 10 C 0.034 3.966 11 H 0.061 0.939 12 C -0.507 4.507 13 H 0.084 0.916 14 C 0.083 3.917 15 N -0.878 5.878 16 Si 0.865 3.135 17 H -0.272 1.272 18 H -0.259 1.259 19 H -0.283 1.283 20 C -0.032 4.032 21 C -0.070 4.070 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.133 4.133 26 C 0.047 3.953 27 O -0.383 6.383 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.401 0.599 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.061 0.939 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 -1.010 6.653 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.184 3.816 3 C -0.265 4.265 4 O -0.302 6.302 5 C -0.027 4.027 6 C -0.022 4.022 7 N -0.379 5.379 8 C 0.323 3.677 9 O -0.430 6.430 10 C 0.012 3.988 11 H 0.079 0.921 12 C -0.544 4.544 13 H 0.102 0.898 14 C -0.122 4.122 15 N -0.513 5.513 16 Si 0.691 3.309 17 H -0.197 1.197 18 H -0.184 1.184 19 H -0.208 1.208 20 C -0.033 4.033 21 C -0.088 4.088 22 C -0.149 4.149 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.031 4.031 27 O -0.302 6.302 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.235 0.765 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.079 0.921 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.311 -1.593 6.183 12.128 hybrid contribution 1.313 0.766 1.020 1.831 sum -8.998 -0.827 7.202 11.555 Atomic orbital electron populations 1.21587 0.89743 1.03954 1.03053 1.22798 0.94526 0.87972 0.76333 1.22852 1.02995 0.96847 1.03812 1.88140 1.20547 1.78446 1.43018 1.22894 0.81115 1.00321 0.98352 1.21956 0.82520 1.02291 0.95470 1.45812 1.04529 1.31793 1.55785 1.21583 0.91200 0.78888 0.76009 1.90598 1.71944 1.36870 1.43604 1.18337 0.88036 0.93207 0.99210 0.92113 1.20530 1.29468 1.07508 0.96923 0.89805 1.25048 0.95485 0.94372 0.97313 1.69868 1.34650 1.10005 1.36804 0.87023 0.79919 0.79239 0.84693 1.19739 1.18351 1.20847 1.19942 0.95477 0.94188 0.93665 1.20900 0.97249 0.94635 0.95986 1.21054 0.99276 0.95526 0.99051 1.20883 1.01064 0.99601 0.94417 1.20886 1.01259 0.96306 0.96450 1.20996 1.00167 0.94793 0.99142 1.23175 0.79658 1.00587 0.99668 1.88159 1.21652 1.78108 1.42322 0.90427 0.90274 0.90905 0.91327 0.90420 0.90629 0.87826 0.92043 0.88090 0.76459 0.92000 0.86246 0.87084 0.87313 0.87236 0.87222 0.92071 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.21 37.16 0.34 -0.92 16 2 C 0.26 3.33 1.50 -26.73 -0.04 3.29 16 3 C -0.21 -2.26 8.11 37.16 0.30 -1.96 16 4 O -0.38 -5.24 10.35 -59.03 -0.61 -5.86 16 5 C 0.05 0.65 6.08 37.29 0.23 0.88 16 6 C 0.08 1.33 2.87 -67.66 -0.19 1.13 16 7 N -0.72 -12.59 5.08 -53.55 -0.27 -12.86 16 8 C 0.53 11.20 6.93 -10.99 -0.08 11.13 16 9 O -0.55 -12.80 14.62 5.56 0.08 -12.72 16 10 C 0.03 0.74 2.20 -94.07 -0.21 0.54 16 11 H 0.06 1.27 4.71 -51.93 -0.24 1.03 16 12 C -0.51 -12.79 8.32 -34.44 -0.29 -13.08 16 13 H 0.08 2.38 7.87 -52.48 -0.41 1.96 16 14 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.88 -24.15 13.96 55.43 0.77 -23.38 16 16 Si 0.87 18.78 26.85 -169.99 -4.56 14.21 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.26 -5.47 6.95 56.52 0.39 -5.07 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 C -0.03 -0.69 4.52 -104.62 -0.47 -1.16 16 21 C -0.07 -1.49 7.98 -39.58 -0.32 -1.80 16 22 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 23 C -0.14 -2.41 10.05 -39.58 -0.40 -2.80 16 24 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 25 C -0.13 -2.61 9.67 -39.58 -0.38 -2.99 16 26 C 0.05 0.75 6.18 37.29 0.23 0.98 16 27 O -0.38 -5.91 10.35 -59.03 -0.61 -6.53 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.80 5.11 -51.93 -0.27 0.53 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.72 6.53 -51.93 -0.34 0.38 16 36 H 0.10 1.79 7.58 -51.92 -0.39 1.40 16 37 H 0.40 6.39 8.61 -40.82 -0.35 6.04 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.12 2.68 7.55 -52.49 -0.40 2.29 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 43 H 0.11 1.99 7.95 -52.49 -0.42 1.57 16 44 H 0.06 0.94 6.53 -51.93 -0.34 0.61 16 45 H 0.11 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -29.77 363.47 -8.42 -38.19 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.53 Total: 13.71 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.16 Total: -10.25 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.50 Total: -36.24 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.14 Total: -25.10 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.56 Total: 14.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.77 -8.42 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361503819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.433 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds