Wall clock time and date at job start Tue Mar 31 2020 12:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42910 * 113.99928 * 2 1 4 4 C 1.52992 * 109.46951 * 179.97438 * 3 2 1 5 5 C 1.53002 * 110.80466 * 56.70710 * 4 3 2 6 6 C 1.54621 * 110.73994 * 179.97438 * 4 3 2 7 7 C 1.54003 * 105.04452 * 140.18558 * 6 4 3 8 8 N 1.47486 * 107.24798 * 1.20824 * 7 6 4 9 9 C 1.34780 * 127.03131 * 154.61054 * 8 7 6 10 10 O 1.21585 * 119.99980 * 174.10366 * 9 8 7 11 11 C 1.47533 * 120.00165 * 354.09944 * 9 8 7 12 12 C 1.39666 * 120.19668 * 21.61569 * 11 9 8 13 13 C 1.37834 * 119.92064 * 179.72318 * 12 11 9 14 14 C 1.38572 * 120.31827 * 0.57913 * 13 12 11 15 15 C 1.38023 * 120.40582 * 359.69911 * 14 13 12 16 16 C 1.38834 * 120.07080 * 359.97438 * 15 14 13 17 17 O 1.35518 * 120.16153 * 179.97438 * 16 15 14 18 18 C 1.34812 * 116.99759 * 5.58916 * 17 16 15 19 19 H 1.07992 * 120.00575 * 354.92427 * 18 17 16 20 20 C 1.38701 * 119.99744 * 174.92016 * 18 17 16 21 21 N 1.31521 * 120.00223 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99934 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47361 * 0.02562 * 22 20 18 24 24 H 1.48512 * 109.46845 * 119.99940 * 22 20 18 25 25 H 1.48491 * 109.47270 * 239.99659 * 22 20 18 26 26 C 1.48381 * 105.79839 * 334.78355 * 8 7 6 27 27 H 1.09006 * 109.46821 * 60.00355 * 1 2 3 28 28 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47541 * 300.00414 * 1 2 3 30 30 H 1.09002 * 109.46916 * 59.99650 * 3 2 1 31 31 H 1.09000 * 109.46858 * 299.99585 * 3 2 1 32 32 H 1.08995 * 109.47723 * 183.28796 * 5 4 3 33 33 H 1.09000 * 109.46897 * 303.29219 * 5 4 3 34 34 H 1.08998 * 109.46864 * 63.28549 * 5 4 3 35 35 H 1.08997 * 110.32244 * 21.29451 * 6 4 3 36 36 H 1.08991 * 110.32834 * 259.08130 * 6 4 3 37 37 H 1.08992 * 109.91325 * 120.67293 * 7 6 4 38 38 H 1.09004 * 109.91182 * 241.75394 * 7 6 4 39 39 H 1.08007 * 120.04071 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.83947 * 180.28453 * 13 12 11 41 41 H 1.08001 * 119.79501 * 179.71892 * 14 13 12 42 42 H 1.07994 * 119.96108 * 180.02562 * 15 14 13 43 43 H 0.97000 * 120.00080 * 179.97438 * 21 20 18 44 44 H 1.08993 * 110.51707 * 280.62683 * 26 8 7 45 45 H 1.08999 * 110.83596 * 157.64987 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0156 0.3589 -1.1945 6 6 4.1954 2.5830 0.0000 7 6 5.3988 2.4574 0.9528 8 7 5.4310 1.0641 1.4354 9 6 6.5069 0.3824 1.8762 10 8 6.3706 -0.7305 2.3465 11 6 7.8499 0.9865 1.7879 12 6 7.9916 2.3723 1.6876 13 6 9.2493 2.9311 1.6112 14 6 10.3754 2.1235 1.6214 15 6 10.2506 0.7521 1.7143 16 6 8.9920 0.1722 1.7989 17 8 8.8673 -1.1742 1.8897 18 6 10.0050 -1.8874 2.0096 19 1 10.9624 -1.3916 1.9475 20 6 9.9460 -3.2582 2.2129 21 7 8.7801 -3.8622 2.2882 22 14 11.5224 -4.2464 2.3799 23 1 12.6910 -3.3382 2.2600 24 1 11.5494 -4.9148 3.7058 25 1 11.5797 -5.2718 1.3074 26 6 4.0364 0.5681 1.3310 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0974 0.2374 -1.1411 33 1 3.5384 -0.6209 -1.1744 34 1 3.7529 0.8720 -2.1196 35 1 3.4957 3.3321 0.3705 36 1 4.5325 2.8421 -1.0035 37 1 6.3207 2.6868 0.4187 38 1 5.2784 3.1392 1.7948 39 1 7.1169 3.0058 1.6748 40 1 9.3575 4.0031 1.5383 41 1 11.3566 2.5700 1.5566 42 1 11.1330 0.1295 1.7221 43 1 8.7388 -4.8209 2.4300 44 1 3.4397 0.9264 2.1697 45 1 4.0147 -0.5206 1.2824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361571001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:29 Heat of formation + Delta-G solvation = -57.603340 kcal Electronic energy + Delta-G solvation = -27437.317422 eV Core-core repulsion = 23614.755261 eV Total energy + Delta-G solvation = -3822.562161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16645 -39.01576 -37.83874 -36.63895 -36.32882 -33.03173 -32.30391 -30.45879 -29.59458 -28.86689 -27.49685 -26.59220 -25.58596 -25.20328 -23.54704 -21.96486 -21.41323 -19.29612 -19.24354 -17.99670 -16.98632 -16.52211 -16.30085 -15.96765 -15.83027 -15.06322 -14.73794 -14.64850 -14.20158 -14.08176 -13.96193 -13.69578 -13.53591 -13.22528 -12.88690 -12.75443 -12.52992 -12.29837 -12.11509 -11.85281 -11.72482 -11.63880 -11.39738 -11.30089 -11.06270 -10.90941 -10.86315 -10.70460 -10.56759 -10.47308 -10.28129 -9.80642 -9.52399 -8.87195 -8.82759 -8.22694 -8.17009 -7.27038 -6.41228 -4.01402 1.77936 2.34165 3.13676 3.15073 3.20606 3.41638 3.61503 3.73240 3.96228 4.48982 4.54625 4.64225 4.78598 5.03220 5.07832 5.09226 5.17402 5.18833 5.22558 5.24740 5.35509 5.42071 5.49805 5.52218 5.59256 5.63567 5.71777 5.77851 5.93182 5.99806 6.02222 6.07330 6.11463 6.18231 6.24184 6.47083 6.59899 6.62190 6.82215 6.97408 7.01323 7.09926 7.28464 7.33340 7.72884 7.96019 8.15856 8.98517 9.08836 9.70468 10.73056 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.003855 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.780893 B = 7261.640809 C = 8906.363342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.079 3.921 4 C -0.074 4.074 5 C -0.131 4.131 6 C -0.125 4.125 7 C 0.092 3.908 8 N -0.629 5.629 9 C 0.579 3.421 10 O -0.501 6.501 11 C -0.220 4.220 12 C -0.060 4.060 13 C -0.232 4.232 14 C -0.052 4.052 15 C -0.239 4.239 16 C 0.190 3.810 17 O -0.131 6.131 18 C -0.402 4.402 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.834 5.834 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.124 3.876 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.271 0.729 44 H 0.063 0.937 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 14.181 -5.712 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.002 3.998 4 C -0.075 4.075 5 C -0.188 4.188 6 C -0.163 4.163 7 C -0.031 4.031 8 N -0.367 5.367 9 C 0.370 3.630 10 O -0.374 6.374 11 C -0.225 4.225 12 C -0.078 4.078 13 C -0.251 4.251 14 C -0.070 4.070 15 C -0.258 4.258 16 C 0.131 3.869 17 O -0.030 6.030 18 C -0.478 4.478 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.466 5.466 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 C 0.002 3.998 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.150 0.850 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.149 0.851 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.190 12.858 -5.352 17.866 hybrid contribution 0.617 -0.036 0.058 0.620 sum -10.574 12.822 -5.294 17.442 Atomic orbital electron populations 1.22726 0.81326 1.02770 0.99651 1.87953 1.19297 1.27638 1.95306 1.22504 0.92466 0.84823 1.00027 1.21678 0.92584 0.96023 0.97202 1.21679 1.01820 1.00033 0.95266 1.22619 0.97087 0.95941 1.00623 1.22452 0.99125 0.84554 0.96991 1.48698 1.07756 1.13323 1.66893 1.17916 0.82760 0.84635 0.77657 1.90924 1.84955 1.18606 1.42951 1.18758 0.90853 0.92877 1.19968 1.21520 0.97865 0.93029 0.95387 1.20489 0.92477 0.98568 1.13529 1.20902 0.97759 0.93182 0.95206 1.21136 0.97411 0.95267 1.11997 1.19234 0.91810 0.85112 0.90735 1.84121 1.33525 1.11342 1.74007 1.21511 0.84342 0.89998 1.51962 0.88827 1.25384 0.98771 0.96037 0.96146 1.70132 1.23777 1.10438 1.42247 0.85660 0.79907 0.79517 0.78388 1.18992 1.20007 1.20043 1.22338 0.81883 1.00962 0.94646 0.94329 0.89647 0.94210 0.93111 0.93074 0.92027 0.91559 0.92933 0.90677 0.90206 0.89237 0.91768 0.85048 0.87324 0.87268 0.85098 0.91916 0.91913 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.55 9.79 -35.23 -0.34 -4.89 16 3 C 0.08 0.79 4.77 37.15 0.18 0.96 16 4 C -0.07 -0.88 0.76 -152.63 -0.12 -1.00 16 5 C -0.13 -1.73 8.36 37.16 0.31 -1.42 16 6 C -0.12 -1.22 6.09 -25.36 -0.15 -1.37 16 7 C 0.09 1.16 5.10 -2.98 -0.02 1.14 16 8 N -0.63 -11.11 3.21 -170.77 -0.55 -11.66 16 9 C 0.58 13.47 7.69 -12.47 -0.10 13.38 16 10 O -0.50 -14.38 15.77 -15.29 -0.24 -14.62 16 11 C -0.22 -4.96 5.83 -104.81 -0.61 -5.57 16 12 C -0.06 -1.06 8.11 -39.20 -0.32 -1.38 16 13 C -0.23 -3.86 10.03 -39.61 -0.40 -4.26 16 14 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 15 C -0.24 -5.25 9.16 -39.44 -0.36 -5.61 16 16 C 0.19 4.85 6.63 -38.60 -0.26 4.59 16 17 O -0.13 -3.96 8.08 -19.77 -0.16 -4.12 16 18 C -0.40 -11.60 9.49 30.90 0.29 -11.31 16 19 H 0.09 2.45 5.21 -52.49 -0.27 2.18 16 20 C 0.04 1.25 5.49 -17.51 -0.10 1.16 16 21 N -0.83 -25.64 13.67 55.48 0.76 -24.88 16 22 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C 0.12 1.95 5.82 -1.97 -0.01 1.94 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.07 0.95 7.59 -51.93 -0.39 0.56 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 36 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 37 H 0.09 1.13 5.55 -51.93 -0.29 0.84 16 38 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 39 H 0.13 1.86 4.09 -52.48 -0.21 1.65 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 45 H 0.09 1.64 7.84 -51.93 -0.41 1.23 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -36.07 364.36 -7.44 -43.51 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.44 Total: 4.00 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.94 Total: -8.69 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.21 Total: -36.54 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.75 Total: -23.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.07 -7.44 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361571001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.094 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds