Wall clock time and date at job start Tue Mar 31 2020 12:39:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53007 * 109.50812 * 2 1
4 4 O 1.43366 * 109.63226 * 120.31796 * 2 1 3
5 5 C 1.44194 * 107.28901 * 119.21425 * 4 2 1
6 6 C 1.54917 * 103.07429 * 338.56081 * 5 4 2
7 7 H 1.09007 * 110.97830 * 277.42018 * 6 5 4
8 8 C 1.52998 * 110.97807 * 153.67024 * 6 5 4
9 9 N 1.46500 * 109.47219 * 179.97438 * 8 6 5
10 10 C 1.34779 * 120.00062 * 180.02562 * 9 8 6
11 11 O 1.21281 * 119.99850 * 359.97438 * 10 9 8
12 12 C 1.50701 * 119.99764 * 180.02562 * 10 9 8
13 13 H 1.09002 * 109.47298 * 59.99988 * 12 10 9
14 14 C 1.50699 * 109.47285 * 299.99475 * 12 10 9
15 15 H 1.08000 * 119.99518 * 334.97457 * 14 12 10
16 16 C 1.37870 * 119.99962 * 154.96698 * 14 12 10
17 17 N 1.31522 * 119.99892 * 173.54830 * 16 14 12
18 18 Si 1.86795 * 120.00145 * 353.55053 * 16 14 12
19 19 H 1.48499 * 109.47456 * 84.79687 * 18 16 14
20 20 H 1.48508 * 109.47228 * 204.79417 * 18 16 14
21 21 H 1.48498 * 109.47473 * 324.79409 * 18 16 14
22 22 C 1.50705 * 109.46639 * 179.97438 * 12 10 9
23 23 C 1.38238 * 119.99930 * 246.36005 * 22 12 10
24 24 C 1.38235 * 119.99659 * 179.97438 * 23 22 12
25 25 C 1.38226 * 120.00169 * 359.97438 * 24 23 22
26 26 C 1.38228 * 120.00320 * 0.27674 * 25 24 23
27 27 C 1.38233 * 119.99759 * 66.34845 * 22 12 10
28 28 O 1.43750 * 109.63355 * 239.68754 * 2 1 3
29 29 H 1.09002 * 109.46832 * 301.13552 * 1 2 3
30 30 H 1.09002 * 109.47232 * 61.13517 * 1 2 3
31 31 H 1.08995 * 109.46999 * 181.13406 * 1 2 3
32 32 H 1.08995 * 109.47042 * 178.86631 * 3 2 1
33 33 H 1.08993 * 109.47108 * 298.86901 * 3 2 1
34 34 H 1.08999 * 109.46688 * 58.86608 * 3 2 1
35 35 H 1.09001 * 110.69662 * 220.16905 * 5 4 2
36 36 H 1.09002 * 110.70018 * 96.95845 * 5 4 2
37 37 H 1.09002 * 109.46885 * 60.00259 * 8 6 5
38 38 H 1.08999 * 109.47136 * 300.00204 * 8 6 5
39 39 H 0.96998 * 119.99890 * 0.02562 * 9 8 6
40 40 H 0.96999 * 120.00112 * 180.02562 * 17 16 14
41 41 H 1.07996 * 119.99745 * 359.97438 * 23 22 12
42 42 H 1.08003 * 119.99461 * 180.02562 * 24 23 22
43 43 H 1.08008 * 119.99896 * 180.02562 * 25 24 23
44 44 H 1.08001 * 120.00353 * 179.72065 * 26 25 24
45 45 H 1.07993 * 120.00527 * 359.97438 * 27 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0409 1.4422 0.0000
4 8 2.0117 -0.6816 1.1656
5 6 2.7885 -1.8087 0.7126
6 6 2.2652 -2.0390 -0.7272
7 1 1.3460 -2.6249 -0.7194
8 6 3.3310 -2.7089 -1.5968
9 7 2.8024 -2.9113 -2.9481
10 6 3.5704 -3.4899 -3.8925
11 8 4.6992 -3.8426 -3.6238
12 6 3.0267 -3.6975 -5.2826
13 1 2.7583 -2.7338 -5.7155
14 6 1.8048 -4.5771 -5.2180
15 1 1.6767 -5.2637 -4.3942
16 6 0.8504 -4.5052 -6.2103
17 7 -0.1505 -5.3584 -6.2232
18 14 0.9787 -3.1960 -7.5365
19 1 1.8718 -3.6761 -8.6214
20 1 -0.3707 -2.9200 -8.0919
21 1 1.5369 -1.9508 -6.9506
22 6 4.0766 -4.3575 -6.1391
23 6 4.6350 -3.6700 -7.2005
24 6 5.5983 -4.2753 -7.9857
25 6 6.0036 -5.5675 -7.7093
26 6 5.4415 -6.2568 -6.6511
27 6 4.4813 -5.6501 -5.8631
28 8 2.0130 -0.6833 -1.1688
29 1 -0.3633 0.5314 0.8797
30 1 -0.3634 0.4961 -0.9000
31 1 -0.3633 -1.0274 0.0203
32 1 3.1307 1.4416 0.0203
33 1 1.6946 1.9504 -0.8999
34 1 1.6614 1.9621 0.8797
35 1 2.5989 -2.6828 1.3357
36 1 3.8509 -1.5651 0.7019
37 1 3.5999 -3.6726 -1.1642
38 1 4.2146 -2.0724 -1.6435
39 1 1.8997 -2.6288 -3.1630
40 1 -0.8218 -5.3080 -6.9215
41 1 4.3185 -2.6603 -7.4162
42 1 6.0348 -3.7380 -8.8147
43 1 6.7566 -6.0402 -8.3226
44 1 5.7549 -7.2681 -6.4378
45 1 4.0455 -6.1869 -5.0335
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362221885.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:13
Heat of formation + Delta-G solvation = -107.652087 kcal
Electronic energy + Delta-G solvation = -27158.606976 eV
Core-core repulsion = 23333.874538 eV
Total energy + Delta-G solvation = -3824.732438 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.79342 -39.29972 -37.89336 -35.42090 -34.45590 -33.64916 -32.70006 -31.48304
-30.10116 -29.67652 -27.79011 -27.59414 -25.52212 -23.48982 -22.01542 -21.79388
-21.32811 -20.91279 -19.28594 -17.63829 -17.12065 -16.77207 -16.23101 -16.05332
-15.60502 -15.06764 -14.98636 -14.56834 -14.33747 -14.08692 -13.88369 -13.76029
-13.27357 -13.05493 -12.76151 -12.64904 -12.63722 -12.53609 -12.35192 -12.27388
-12.17406 -11.95149 -11.85369 -11.78994 -11.38928 -11.13157 -10.97787 -10.43406
-10.29744 -10.27195 -9.91760 -9.80778 -9.54757 -8.93831 -8.74767 -8.49564
-8.09819 -7.79455 -6.30172 -4.34560 2.18172 2.24806 3.15893 3.19092
3.24405 3.28946 3.54538 3.68022 3.81145 4.24324 4.49540 4.59446
4.66632 4.68801 4.81111 4.87030 5.01826 5.11613 5.35005 5.37558
5.39880 5.49976 5.53539 5.57611 5.62845 5.71187 5.71397 5.77155
5.88983 5.95847 5.96912 6.00275 6.11886 6.31427 6.34673 6.50465
6.76743 6.88125 6.95909 7.02459 7.19661 7.27899 7.29719 7.62833
7.83045 8.17055 8.25081 8.68324 9.05975 9.28509 10.80708
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.014464 B = 0.003747 C = 0.003327
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1935.326716 B = 7471.809397 C = 8413.308110
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.248 3.752
3 C -0.153 4.153
4 O -0.380 6.380
5 C 0.031 3.969
6 C 0.035 3.965
7 H 0.095 0.905
8 C 0.133 3.867
9 N -0.725 5.725
10 C 0.539 3.461
11 O -0.561 6.561
12 C 0.022 3.978
13 H 0.069 0.931
14 C -0.514 4.514
15 H 0.082 0.918
16 C 0.088 3.912
17 N -0.882 5.882
18 Si 0.863 3.137
19 H -0.265 1.265
20 H -0.286 1.286
21 H -0.262 1.262
22 C -0.028 4.028
23 C -0.136 4.136
24 C -0.129 4.129
25 C -0.143 4.143
26 C -0.130 4.130
27 C -0.070 4.070
28 O -0.361 6.361
29 H 0.072 0.928
30 H 0.077 0.923
31 H 0.065 0.935
32 H 0.066 0.934
33 H 0.075 0.925
34 H 0.074 0.926
35 H 0.103 0.897
36 H 0.080 0.920
37 H 0.081 0.919
38 H 0.071 0.929
39 H 0.409 0.591
40 H 0.268 0.732
41 H 0.107 0.893
42 H 0.109 0.891
43 H 0.108 0.892
44 H 0.111 0.889
45 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.649 8.750 9.428 13.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.171 3.829
3 C -0.211 4.211
4 O -0.302 6.302
5 C -0.046 4.046
6 C -0.022 4.022
7 H 0.113 0.887
8 C 0.008 3.992
9 N -0.378 5.378
10 C 0.328 3.672
11 O -0.440 6.440
12 C 0.001 3.999
13 H 0.086 0.914
14 C -0.551 4.551
15 H 0.100 0.900
16 C -0.117 4.117
17 N -0.518 5.518
18 Si 0.690 3.310
19 H -0.190 1.190
20 H -0.211 1.211
21 H -0.188 1.188
22 C -0.030 4.030
23 C -0.154 4.154
24 C -0.148 4.148
25 C -0.161 4.161
26 C -0.148 4.148
27 C -0.088 4.088
28 O -0.282 6.282
29 H 0.091 0.909
30 H 0.096 0.904
31 H 0.084 0.916
32 H 0.085 0.915
33 H 0.094 0.906
34 H 0.093 0.907
35 H 0.121 0.879
36 H 0.098 0.902
37 H 0.099 0.901
38 H 0.090 0.910
39 H 0.245 0.755
40 H 0.079 0.921
41 H 0.125 0.875
42 H 0.127 0.873
43 H 0.127 0.873
44 H 0.129 0.871
45 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 4.251 8.593 9.523 13.513
hybrid contribution -0.618 0.576 -0.941 1.265
sum 3.633 9.169 8.582 13.073
Atomic orbital electron populations
1.22380 0.93732 1.03540 1.03246 1.23388 0.93059 0.91451 0.74962
1.22062 1.02442 0.93471 1.03094 1.88874 1.69584 1.41992 1.29718
1.24124 0.96705 0.89744 0.94071 1.24253 0.99609 0.84949 0.93435
0.88736 1.21147 0.94961 0.99754 0.83350 1.45776 1.18862 1.63557
1.09620 1.21021 0.84241 0.74517 0.87420 1.90599 1.19594 1.51157
1.82601 1.18506 0.94478 0.98561 0.88399 0.91367 1.20508 1.00936
1.22759 1.10895 0.90004 1.24928 0.94784 0.95250 0.96744 1.69871
1.13068 1.34927 1.33916 0.87006 0.77847 0.82980 0.83168 1.18963
1.21147 1.18755 1.20078 0.93565 0.94405 0.94906 1.20974 0.97987
0.99388 0.97077 1.20871 0.98574 0.95615 0.99700 1.20857 1.01202
0.95250 0.98777 1.21035 0.98121 0.99340 0.96340 1.20843 0.95105
0.94500 0.98357 1.89348 1.85853 1.21427 1.31540 0.90941 0.90407
0.91630 0.91504 0.90600 0.90684 0.87889 0.90222 0.90116 0.91045
0.75530 0.92147 0.87479 0.87298 0.87345 0.87124 0.86438
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.73 9.19 37.16 0.34 -1.39 16
2 C 0.25 2.87 1.47 -26.73 -0.04 2.83 16
3 C -0.15 -1.50 9.24 37.16 0.34 -1.16 16
4 O -0.38 -4.52 10.87 -59.04 -0.64 -5.16 16
5 C 0.03 0.31 7.54 38.17 0.29 0.60 16
6 C 0.04 0.43 3.53 -25.72 -0.09 0.34 16
7 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16
8 C 0.13 1.90 5.44 -4.04 -0.02 1.88 16
9 N -0.73 -12.96 5.45 -60.29 -0.33 -13.29 16
10 C 0.54 11.56 7.04 -10.98 -0.08 11.48 16
11 O -0.56 -13.08 15.43 5.56 0.09 -13.00 16
12 C 0.02 0.50 1.89 -94.07 -0.18 0.32 16
13 H 0.07 1.54 5.20 -51.93 -0.27 1.27 16
14 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16
15 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16
16 C 0.09 2.33 5.47 -17.82 -0.10 2.23 16
17 N -0.88 -24.91 13.96 55.43 0.77 -24.14 16
18 Si 0.86 20.09 26.62 -169.99 -4.53 15.56 16
19 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16
20 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16
21 H -0.26 -5.74 6.31 56.52 0.36 -5.38 16
22 C -0.03 -0.64 3.89 -104.62 -0.41 -1.05 16
23 C -0.14 -2.83 9.17 -39.58 -0.36 -3.19 16
24 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16
25 C -0.14 -2.55 10.05 -39.59 -0.40 -2.95 16
26 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16
27 C -0.07 -1.55 8.32 -39.58 -0.33 -1.88 16
28 O -0.36 -4.88 10.73 -59.04 -0.63 -5.51 16
29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16
36 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16
37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16
38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
39 H 0.41 7.16 8.36 -40.82 -0.34 6.82 16
40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16
41 H 0.11 2.07 7.96 -52.49 -0.42 1.65 16
42 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16
43 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16
44 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16
45 H 0.12 2.68 7.88 -52.49 -0.41 2.26 16
LS Contribution 373.31 15.07 5.63 5.63
Total: -1.00 -30.85 373.31 -8.70 -39.55
By element:
Atomic # 1 Polarization: 18.30 SS G_CDS: -6.96 Total: 11.34 kcal
Atomic # 6 Polarization: -8.88 SS G_CDS: -2.10 Total: -10.98 kcal
Atomic # 7 Polarization: -37.87 SS G_CDS: 0.44 Total: -37.43 kcal
Atomic # 8 Polarization: -22.48 SS G_CDS: -1.19 Total: -23.67 kcal
Atomic # 14 Polarization: 20.09 SS G_CDS: -4.53 Total: 15.56 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -30.85 -8.70 -39.55 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362221885.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.104 kcal
(2) G-P(sol) polarization free energy of solvation -30.846 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.950 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds