Wall clock time and date at job start Tue Mar 31 2020 12:39:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53007 * 109.50812 * 2 1
4 4 O 1.43366 * 109.63226 * 120.31796 * 2 1 3
5 5 C 1.44194 * 107.28901 * 119.21425 * 4 2 1
6 6 C 1.54917 * 103.07429 * 338.56081 * 5 4 2
7 7 H 1.09007 * 110.97830 * 277.42018 * 6 5 4
8 8 C 1.52998 * 110.97807 * 153.67024 * 6 5 4
9 9 N 1.46500 * 109.47219 * 179.97438 * 8 6 5
10 10 C 1.34779 * 120.00062 * 180.02562 * 9 8 6
11 11 O 1.21281 * 119.99850 * 359.97438 * 10 9 8
12 12 C 1.50701 * 119.99764 * 180.02562 * 10 9 8
13 13 H 1.09002 * 109.47298 * 59.99988 * 12 10 9
14 14 C 1.50699 * 109.47285 * 299.99475 * 12 10 9
15 15 H 1.08000 * 119.99518 * 334.97457 * 14 12 10
16 16 C 1.37870 * 119.99962 * 154.96698 * 14 12 10
17 17 N 1.31522 * 119.99892 * 173.54830 * 16 14 12
18 18 Si 1.86795 * 120.00145 * 353.55053 * 16 14 12
19 19 H 1.48499 * 109.47456 * 84.79687 * 18 16 14
20 20 H 1.48508 * 109.47228 * 204.79417 * 18 16 14
21 21 H 1.48498 * 109.47473 * 324.79409 * 18 16 14
22 22 C 1.50705 * 109.46639 * 179.97438 * 12 10 9
23 23 C 1.38238 * 119.99930 * 246.36005 * 22 12 10
24 24 C 1.38235 * 119.99659 * 179.97438 * 23 22 12
25 25 C 1.38226 * 120.00169 * 359.97438 * 24 23 22
26 26 C 1.38228 * 120.00320 * 0.27674 * 25 24 23
27 27 C 1.38233 * 119.99759 * 66.34845 * 22 12 10
28 28 O 1.43750 * 109.63355 * 239.68754 * 2 1 3
29 29 H 1.09002 * 109.46832 * 301.13552 * 1 2 3
30 30 H 1.09002 * 109.47232 * 61.13517 * 1 2 3
31 31 H 1.08995 * 109.46999 * 181.13406 * 1 2 3
32 32 H 1.08995 * 109.47042 * 178.86631 * 3 2 1
33 33 H 1.08993 * 109.47108 * 298.86901 * 3 2 1
34 34 H 1.08999 * 109.46688 * 58.86608 * 3 2 1
35 35 H 1.09001 * 110.69662 * 220.16905 * 5 4 2
36 36 H 1.09002 * 110.70018 * 96.95845 * 5 4 2
37 37 H 1.09002 * 109.46885 * 60.00259 * 8 6 5
38 38 H 1.08999 * 109.47136 * 300.00204 * 8 6 5
39 39 H 0.96998 * 119.99890 * 0.02562 * 9 8 6
40 40 H 0.96999 * 120.00112 * 180.02562 * 17 16 14
41 41 H 1.07996 * 119.99745 * 359.97438 * 23 22 12
42 42 H 1.08003 * 119.99461 * 180.02562 * 24 23 22
43 43 H 1.08008 * 119.99896 * 180.02562 * 25 24 23
44 44 H 1.08001 * 120.00353 * 179.72065 * 26 25 24
45 45 H 1.07993 * 120.00527 * 359.97438 * 27 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0409 1.4422 0.0000
4 8 2.0117 -0.6816 1.1656
5 6 2.7885 -1.8087 0.7126
6 6 2.2652 -2.0390 -0.7272
7 1 1.3460 -2.6249 -0.7194
8 6 3.3310 -2.7089 -1.5968
9 7 2.8024 -2.9113 -2.9481
10 6 3.5704 -3.4899 -3.8925
11 8 4.6992 -3.8426 -3.6238
12 6 3.0267 -3.6975 -5.2826
13 1 2.7583 -2.7338 -5.7155
14 6 1.8048 -4.5771 -5.2180
15 1 1.6767 -5.2637 -4.3942
16 6 0.8504 -4.5052 -6.2103
17 7 -0.1505 -5.3584 -6.2232
18 14 0.9787 -3.1960 -7.5365
19 1 1.8718 -3.6761 -8.6214
20 1 -0.3707 -2.9200 -8.0919
21 1 1.5369 -1.9508 -6.9506
22 6 4.0766 -4.3575 -6.1391
23 6 4.6350 -3.6700 -7.2005
24 6 5.5983 -4.2753 -7.9857
25 6 6.0036 -5.5675 -7.7093
26 6 5.4415 -6.2568 -6.6511
27 6 4.4813 -5.6501 -5.8631
28 8 2.0130 -0.6833 -1.1688
29 1 -0.3633 0.5314 0.8797
30 1 -0.3634 0.4961 -0.9000
31 1 -0.3633 -1.0274 0.0203
32 1 3.1307 1.4416 0.0203
33 1 1.6946 1.9504 -0.8999
34 1 1.6614 1.9621 0.8797
35 1 2.5989 -2.6828 1.3357
36 1 3.8509 -1.5651 0.7019
37 1 3.5999 -3.6726 -1.1642
38 1 4.2146 -2.0724 -1.6435
39 1 1.8997 -2.6288 -3.1630
40 1 -0.8218 -5.3080 -6.9215
41 1 4.3185 -2.6603 -7.4162
42 1 6.0348 -3.7380 -8.8147
43 1 6.7566 -6.0402 -8.3226
44 1 5.7549 -7.2681 -6.4378
45 1 4.0455 -6.1869 -5.0335
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362221885.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:12
Heat of formation + Delta-G solvation = -127.443287 kcal
Electronic energy + Delta-G solvation = -27159.465186 eV
Core-core repulsion = 23333.874538 eV
Total energy + Delta-G solvation = -3825.590649 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.74751 -40.91392 -39.43037 -36.53990 -35.60963 -35.51739 -33.79197 -33.29827
-31.62579 -30.81089 -29.36277 -28.38486 -26.76086 -25.25136 -23.38403 -23.07655
-22.46048 -22.15977 -20.90389 -19.09138 -18.59966 -18.15965 -17.66147 -17.30985
-16.90975 -16.45151 -16.11374 -16.08459 -15.75344 -15.48809 -15.24370 -14.86833
-14.76544 -14.39504 -14.27085 -14.06830 -13.83410 -13.72550 -13.61014 -13.43180
-13.23804 -13.14183 -13.04174 -12.95261 -12.74057 -12.67870 -12.33714 -12.03820
-12.00464 -11.62836 -11.41726 -11.22100 -10.87004 -10.68231 -10.59293 -10.00776
-9.63850 -9.37497 -8.35124 -6.42378 0.64217 0.70817 1.33583 1.38244
1.42348 1.83633 2.20835 2.30475 2.39045 2.88435 2.96183 3.14927
3.47836 3.65979 3.79835 3.94795 3.94984 4.10054 4.20293 4.25186
4.28487 4.33592 4.39031 4.40269 4.53946 4.61621 4.65830 4.67162
4.75573 4.77341 4.81676 4.84826 4.91157 4.96372 5.14261 5.19337
5.22208 5.32350 5.40144 5.55182 5.69640 5.74108 5.95350 6.07329
6.19395 6.30158 6.59588 6.63376 7.23169 7.39862 8.79099
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.014464 B = 0.003747 C = 0.003327
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1935.326716 B = 7471.809397 C = 8413.308110
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.238 3.762
3 C -0.152 4.152
4 O -0.389 6.389
5 C 0.033 3.967
6 C 0.039 3.961
7 H 0.097 0.903
8 C 0.133 3.867
9 N -0.717 5.717
10 C 0.535 3.465
11 O -0.583 6.583
12 C 0.023 3.977
13 H 0.072 0.928
14 C -0.500 4.500
15 H 0.044 0.956
16 C 0.041 3.959
17 N -0.929 5.929
18 Si 0.916 3.084
19 H -0.265 1.265
20 H -0.284 1.284
21 H -0.240 1.240
22 C -0.056 4.056
23 C -0.154 4.154
24 C -0.127 4.127
25 C -0.136 4.136
26 C -0.134 4.134
27 C -0.101 4.101
28 O -0.382 6.382
29 H 0.087 0.913
30 H 0.080 0.920
31 H 0.058 0.942
32 H 0.061 0.939
33 H 0.079 0.921
34 H 0.091 0.909
35 H 0.126 0.874
36 H 0.088 0.912
37 H 0.087 0.913
38 H 0.070 0.930
39 H 0.411 0.589
40 H 0.269 0.731
41 H 0.119 0.881
42 H 0.147 0.853
43 H 0.150 0.850
44 H 0.135 0.865
45 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.080 10.150 8.703 14.303
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.162 3.838
3 C -0.209 4.209
4 O -0.311 6.311
5 C -0.043 4.043
6 C -0.018 4.018
7 H 0.115 0.885
8 C 0.009 3.991
9 N -0.369 5.369
10 C 0.324 3.676
11 O -0.464 6.464
12 C 0.002 3.998
13 H 0.090 0.910
14 C -0.538 4.538
15 H 0.062 0.938
16 C -0.160 4.160
17 N -0.566 5.566
18 Si 0.740 3.260
19 H -0.189 1.189
20 H -0.210 1.210
21 H -0.164 1.164
22 C -0.057 4.057
23 C -0.172 4.172
24 C -0.144 4.144
25 C -0.154 4.154
26 C -0.152 4.152
27 C -0.119 4.119
28 O -0.303 6.303
29 H 0.106 0.894
30 H 0.098 0.902
31 H 0.077 0.923
32 H 0.080 0.920
33 H 0.098 0.902
34 H 0.109 0.891
35 H 0.144 0.856
36 H 0.106 0.894
37 H 0.105 0.895
38 H 0.088 0.912
39 H 0.246 0.754
40 H 0.079 0.921
41 H 0.137 0.863
42 H 0.165 0.835
43 H 0.168 0.832
44 H 0.153 0.847
45 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 5.680 10.020 8.833 14.515
hybrid contribution -0.989 0.079 -0.656 1.189
sum 4.692 10.099 8.178 13.816
Atomic orbital electron populations
1.22385 0.92838 1.03403 1.04124 1.23674 0.93852 0.91994 0.74286
1.22082 1.02130 0.92585 1.04105 1.88860 1.69909 1.42393 1.29924
1.24229 0.96940 0.90246 0.92905 1.24185 0.98979 0.84575 0.94067
0.88545 1.21293 0.95652 1.00358 0.81798 1.45756 1.18460 1.62099
1.10561 1.20848 0.84222 0.74886 0.87673 1.90570 1.20518 1.52397
1.82926 1.18440 0.93670 0.97968 0.89723 0.90992 1.20454 1.02068
1.21878 1.09396 0.93805 1.25605 0.94413 0.97096 0.98875 1.69993
1.14324 1.37093 1.35236 0.86161 0.77847 0.81460 0.80556 1.18944
1.21012 1.16358 1.20098 0.94703 0.94931 0.95993 1.21242 0.98896
1.00145 0.96931 1.21354 0.97248 0.95972 0.99856 1.21347 1.01043
0.95002 0.98028 1.21372 0.97049 1.00583 0.96191 1.20839 0.97085
0.94953 0.99048 1.89326 1.86174 1.21915 1.32898 0.89404 0.90158
0.92317 0.92025 0.90191 0.89052 0.85611 0.89429 0.89542 0.91205
0.75396 0.92136 0.86319 0.83499 0.83197 0.84686 0.89015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.24 9.19 71.98 0.66 -2.58 16
2 C 0.24 5.23 1.47 30.60 0.04 5.27 16
3 C -0.15 -2.76 9.24 71.98 0.66 -2.10 16
4 O -0.39 -8.68 10.87 -126.22 -1.37 -10.05 16
5 C 0.03 0.64 7.54 72.64 0.55 1.19 16
6 C 0.04 0.94 3.53 31.25 0.11 1.05 16
7 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16
8 C 0.13 3.81 5.44 86.38 0.47 4.28 16
9 N -0.72 -26.12 5.45 -463.06 -2.53 -28.65 16
10 C 0.54 23.49 7.04 87.66 0.62 24.11 16
11 O -0.58 -27.79 15.43 -3.03 -0.05 -27.84 16
12 C 0.02 1.08 1.89 -13.03 -0.02 1.06 16
13 H 0.07 3.22 5.20 -2.39 -0.01 3.21 16
14 C -0.50 -26.43 8.01 25.60 0.21 -26.23 16
15 H 0.04 2.59 8.05 -2.91 -0.02 2.56 16
16 C 0.04 2.20 5.47 84.65 0.46 2.66 16
17 N -0.93 -54.15 13.96 21.45 0.30 -53.85 16
18 Si 0.92 41.23 26.62 68.60 1.83 43.06 16
19 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16
20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16
21 H -0.24 -9.81 6.31 99.48 0.63 -9.18 16
22 C -0.06 -2.55 3.89 -19.86 -0.08 -2.63 16
23 C -0.15 -6.12 9.17 22.27 0.20 -5.92 16
24 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16
25 C -0.14 -4.39 10.05 22.26 0.22 -4.17 16
26 C -0.13 -4.96 10.05 22.27 0.22 -4.74 16
27 C -0.10 -4.54 8.32 22.27 0.19 -4.36 16
28 O -0.38 -10.09 10.73 -126.22 -1.35 -11.45 16
29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
35 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16
36 H 0.09 1.54 8.04 -2.39 -0.02 1.52 16
37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16
38 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16
39 H 0.41 14.67 8.36 -92.71 -0.77 13.90 16
40 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16
41 H 0.12 4.31 7.96 -2.91 -0.02 4.29 16
42 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16
43 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16
44 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16
45 H 0.09 4.45 7.88 -2.91 -0.02 4.43 16
Total: -1.00 -68.22 373.31 1.70 -66.52
By element:
Atomic # 1 Polarization: 39.21 SS G_CDS: 0.13 Total: 39.34 kcal
Atomic # 6 Polarization: -21.84 SS G_CDS: 4.74 Total: -17.09 kcal
Atomic # 7 Polarization: -80.27 SS G_CDS: -2.23 Total: -82.50 kcal
Atomic # 8 Polarization: -46.56 SS G_CDS: -2.77 Total: -49.33 kcal
Atomic # 14 Polarization: 41.23 SS G_CDS: 1.83 Total: 43.06 kcal
Total: -68.22 1.70 -66.52 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362221885.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.922 kcal
(2) G-P(sol) polarization free energy of solvation -68.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds