Wall clock time and date at job start Tue Mar 31 2020 12:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30287 * 126.34616 * 2 1 4 4 N 1.28527 * 110.05314 * 180.02562 * 3 2 1 5 5 C 1.31219 * 109.86128 * 359.74806 * 4 3 2 6 6 N 1.38577 * 126.47734 * 180.25341 * 5 4 3 7 7 C 1.46899 * 110.99947 * 251.41085 * 6 5 4 8 8 C 1.46895 * 111.00012 * 15.37061 * 6 5 4 9 9 H 1.08996 * 109.47570 * 54.99384 * 8 6 5 10 10 C 1.52999 * 109.46809 * 294.99568 * 8 6 5 11 11 C 1.50698 * 109.47176 * 175.00013 * 8 6 5 12 12 H 1.08006 * 120.00161 * 114.63768 * 11 8 6 13 13 C 1.37877 * 120.00154 * 294.63109 * 11 8 6 14 14 N 1.31509 * 120.00275 * 179.10282 * 13 11 8 15 15 Si 1.86805 * 119.99711 * 359.11352 * 13 11 8 16 16 H 1.48503 * 109.47286 * 91.38542 * 15 13 11 17 17 H 1.48496 * 109.46923 * 211.38932 * 15 13 11 18 18 H 1.48502 * 109.46898 * 331.38536 * 15 13 11 19 19 N 1.36457 * 107.05035 * 0.40073 * 5 4 3 20 20 C 1.46499 * 127.13523 * 179.87270 * 19 5 4 21 21 C 1.50707 * 109.47235 * 265.94654 * 20 19 5 22 22 C 1.38230 * 119.58590 * 124.01238 * 21 20 19 23 23 C 1.38592 * 119.18562 * 180.02562 * 22 21 20 24 24 C 1.38884 * 118.39957 * 0.25401 * 23 22 21 25 25 F 1.35101 * 120.44002 * 179.75133 * 24 23 22 26 26 C 1.38421 * 119.11257 * 359.51795 * 24 23 22 27 27 N 1.31840 * 119.58765 * 304.03289 * 21 20 19 28 28 H 1.09003 * 109.46855 * 269.95713 * 1 2 3 29 29 H 1.08998 * 109.47112 * 29.95546 * 1 2 3 30 30 H 1.08997 * 109.47508 * 149.95229 * 1 2 3 31 31 H 1.09001 * 109.47155 * 55.34866 * 7 6 5 32 32 H 1.09008 * 109.47048 * 175.33991 * 7 6 5 33 33 H 1.08992 * 109.47718 * 295.34057 * 7 6 5 34 34 H 1.09007 * 109.47167 * 67.22518 * 10 8 6 35 35 H 1.09002 * 109.47241 * 187.22176 * 10 8 6 36 36 H 1.08996 * 109.47642 * 307.22290 * 10 8 6 37 37 H 0.97000 * 120.00333 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46863 * 145.94817 * 20 19 5 39 39 H 1.08998 * 109.47326 * 25.94907 * 20 19 5 40 40 H 1.07998 * 120.40893 * 359.97438 * 22 21 20 41 41 H 1.08001 * 120.79997 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.63527 * 180.21262 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5945 -0.6208 0.0045 6 7 4.7579 -1.3737 0.0106 7 6 4.9660 -2.0315 -1.2863 8 6 5.9173 -0.5482 0.3743 9 1 5.7291 -0.0581 1.3295 10 6 6.1481 0.5108 -0.7055 11 6 7.1396 -1.4220 0.4902 12 1 7.9607 -1.2965 -0.2001 13 6 7.2098 -2.3818 1.4777 14 7 8.2689 -3.1562 1.5679 15 14 5.8004 -2.5822 2.6872 16 1 4.8394 -3.5870 2.1655 17 1 6.3326 -3.0391 3.9960 18 1 5.1088 -1.2797 2.8615 19 7 2.3174 -1.1014 -0.0007 20 6 1.9009 -2.5059 -0.0006 21 6 1.6684 -2.9611 -1.4183 22 6 2.3502 -4.0618 -1.9023 23 6 2.1304 -4.4728 -3.2075 24 6 1.2311 -3.7536 -3.9839 25 9 0.9895 -4.1149 -5.2631 26 6 0.5822 -2.6645 -3.4282 27 7 0.8174 -2.3042 -2.1816 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5145 31 1 4.9599 -1.2829 -2.0786 32 1 5.9260 -2.5479 -1.2819 33 1 4.1669 -2.7518 -1.4608 34 1 5.3202 1.2200 -0.7019 35 1 7.0798 1.0391 -0.5031 36 1 6.2087 0.0281 -1.6809 37 1 8.3182 -3.8316 2.2623 38 1 0.9787 -2.6113 0.5708 39 1 2.6815 -3.1163 0.4536 40 1 3.0463 -4.5945 -1.2714 41 1 2.6493 -5.3291 -3.6124 42 1 -0.1213 -2.1013 -4.0233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417464857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:12 Heat of formation + Delta-G solvation = 96.037468 kcal Electronic energy + Delta-G solvation = -27943.306001 eV Core-core repulsion = 24068.531402 eV Total energy + Delta-G solvation = -3874.774599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.33086 -42.54075 -40.48069 -37.46710 -35.24934 -32.94154 -32.63339 -31.68178 -31.26569 -29.59084 -27.50794 -26.93842 -25.60147 -24.79984 -24.33577 -22.89152 -21.46250 -20.36343 -19.31384 -18.03365 -17.61973 -17.20185 -16.75674 -16.62023 -16.08767 -15.70284 -15.31074 -14.76631 -14.46994 -14.32825 -13.90132 -13.81326 -13.56069 -13.51134 -13.40395 -12.86790 -12.68726 -12.64191 -12.46969 -12.36446 -12.03254 -11.60738 -11.36230 -10.86082 -10.76226 -10.66004 -10.31531 -10.26868 -10.14605 -9.78662 -9.72879 -9.52236 -9.27441 -9.18480 -8.84552 -8.67776 -7.49916 -6.18781 -4.25396 0.42679 0.70700 2.20440 2.59543 3.24762 3.31686 3.37595 3.39213 3.51515 3.58866 3.84917 4.16280 4.36666 4.38550 4.43588 4.51002 4.72864 4.78195 4.95632 5.18807 5.24997 5.28567 5.30154 5.48138 5.53797 5.59333 5.65778 5.86342 5.93484 6.02605 6.14909 6.19913 6.29805 6.44232 6.60859 6.62112 6.78047 6.95572 7.17789 7.29533 7.40580 7.52657 7.67790 8.08861 8.44559 8.84820 9.32667 9.45106 10.90667 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.005382 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.304675 B = 5200.968387 C = 6159.291975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.173 3.827 3 N -0.297 5.297 4 N -0.322 5.322 5 C 0.376 3.624 6 N -0.461 5.461 7 C 0.036 3.964 8 C 0.185 3.815 9 H 0.055 0.945 10 C -0.171 4.171 11 C -0.509 4.509 12 H 0.078 0.922 13 C 0.086 3.914 14 N -0.890 5.890 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.303 1.303 18 H -0.268 1.268 19 N -0.480 5.480 20 C 0.165 3.835 21 C 0.095 3.905 22 C -0.119 4.119 23 C -0.105 4.105 24 C 0.052 3.948 25 F -0.129 7.129 26 C 0.077 3.923 27 N -0.439 5.439 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 -4.871 -7.762 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 N -0.136 5.136 4 N -0.166 5.166 5 C 0.021 3.979 6 N -0.187 5.187 7 C -0.111 4.111 8 C 0.082 3.918 9 H 0.072 0.928 10 C -0.230 4.230 11 C -0.548 4.548 12 H 0.096 0.904 13 C -0.119 4.119 14 N -0.527 5.527 15 Si 0.734 3.266 16 H -0.205 1.205 17 H -0.231 1.231 18 H -0.193 1.193 19 N -0.176 5.176 20 C 0.040 3.960 21 C -0.044 4.044 22 C -0.140 4.140 23 C -0.132 4.132 24 C 0.030 3.970 25 F -0.108 7.108 26 C -0.082 4.082 27 N -0.147 5.147 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.640 -3.200 -6.999 19.246 hybrid contribution -0.457 -2.067 -0.512 2.178 sum -18.097 -5.267 -7.512 20.290 Atomic orbital electron populations 1.20118 0.84403 1.04535 1.02774 1.24538 0.96214 0.82355 1.06387 1.73927 0.97054 1.24279 1.18316 1.74696 1.10793 1.07401 1.23666 1.23454 0.84995 0.89636 0.99845 1.60010 0.99934 1.30071 1.28672 1.22356 1.03604 0.97607 0.87519 1.19895 0.85835 0.90619 0.95404 0.92751 1.22455 1.01934 1.00010 0.98639 1.20970 0.99865 1.17899 1.16045 0.90360 1.25041 0.95362 0.94532 0.96978 1.69938 1.28616 1.20458 1.33639 0.86355 0.82266 0.78953 0.79005 1.20479 1.23080 1.19263 1.46129 1.06421 1.06898 1.58183 1.20575 1.03478 0.80443 0.91468 1.21425 0.93535 0.92840 0.96567 1.21996 0.99199 0.97148 0.95628 1.21697 0.96995 1.00451 0.94032 1.18860 0.99803 0.97753 0.80536 1.91537 1.93124 1.91143 1.34965 1.22886 0.99110 0.94102 0.92080 1.67456 1.14735 1.27995 1.04513 0.90822 0.89522 0.89769 0.95491 0.87870 0.93568 0.91045 0.92932 0.94360 0.92502 0.87166 0.86275 0.82807 0.82966 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.16 36.01 0.37 -0.30 16 2 C 0.17 2.87 8.05 -154.02 -1.24 1.63 16 3 N -0.30 -6.04 12.18 32.99 0.40 -5.64 16 4 N -0.32 -7.16 8.99 30.31 0.27 -6.89 16 5 C 0.38 7.73 6.66 -318.87 -2.12 5.60 16 6 N -0.46 -9.82 2.89 -176.09 -0.51 -10.33 16 7 C 0.04 0.68 8.66 60.06 0.52 1.20 16 8 C 0.19 4.41 1.45 -68.87 -0.10 4.32 16 9 H 0.05 1.42 6.74 -51.93 -0.35 1.07 16 10 C -0.17 -3.78 8.53 37.16 0.32 -3.47 16 11 C -0.51 -13.54 7.68 -34.44 -0.26 -13.80 16 12 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 13 C 0.09 2.35 5.47 -17.82 -0.10 2.25 16 14 N -0.89 -25.64 13.96 55.43 0.77 -24.87 16 15 Si 0.90 21.90 26.39 -169.99 -4.49 17.41 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 18 H -0.27 -6.69 6.35 56.52 0.36 -6.33 16 19 N -0.48 -8.07 2.76 -115.36 -0.32 -8.39 16 20 C 0.17 2.10 5.69 -5.19 -0.03 2.07 16 21 C 0.10 1.11 5.74 -82.59 -0.47 0.63 16 22 C -0.12 -1.20 7.67 -39.45 -0.30 -1.50 16 23 C -0.11 -0.96 10.16 -39.21 -0.40 -1.36 16 24 C 0.05 0.51 7.35 -39.27 -0.29 0.22 16 25 F -0.13 -1.29 17.28 2.25 0.04 -1.26 16 26 C 0.08 0.77 11.17 -17.47 -0.20 0.58 16 27 N -0.44 -5.12 9.10 -9.42 -0.09 -5.21 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.85 6.84 -51.93 -0.35 0.50 16 31 H 0.03 0.51 6.60 -51.93 -0.34 0.17 16 32 H 0.10 2.11 6.85 -51.92 -0.36 1.76 16 33 H 0.05 0.73 4.21 -51.93 -0.22 0.51 16 34 H 0.07 1.60 5.58 -51.92 -0.29 1.31 16 35 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 36 H 0.04 0.81 6.21 -51.93 -0.32 0.48 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 38 H 0.11 1.08 8.03 -51.93 -0.42 0.67 16 39 H 0.12 1.56 7.86 -51.93 -0.41 1.15 16 40 H 0.15 1.36 7.80 -52.49 -0.41 0.95 16 41 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -32.70 342.10 -8.25 -40.95 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.18 Total: 1.00 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -4.31 Total: -1.94 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.54 Total: -61.32 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.49 Total: 17.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.70 -8.25 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417464857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.986 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds