Wall clock time and date at job start Tue Mar 31 2020 13:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46796 * 2 1 4 4 C 1.52999 * 109.46800 * 300.00012 * 3 2 1 5 5 C 1.53005 * 109.47074 * 299.99851 * 4 3 2 6 6 C 1.52995 * 109.47067 * 59.99866 * 3 2 1 7 7 N 1.46494 * 109.47394 * 60.00227 * 6 3 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 3 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39235 * 120.28378 * 356.68142 * 10 8 7 12 12 C 1.38213 * 120.09167 * 180.28304 * 11 10 8 13 13 C 1.38829 * 120.67951 * 359.69388 * 12 11 10 14 14 C 1.37601 * 120.56944 * 0.02562 * 13 12 11 15 15 C 1.40712 * 119.87956 * 0.02562 * 14 13 12 16 16 C 1.40885 * 120.32562 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99856 * 145.79790 * 16 15 14 18 18 C 1.40271 * 120.00127 * 325.78891 * 16 15 14 19 19 N 1.30625 * 120.00346 * 340.75265 * 18 16 15 20 20 Si 1.86809 * 119.99961 * 160.74521 * 18 16 15 21 21 H 1.48493 * 109.47112 * 180.02562 * 20 18 16 22 22 H 1.48507 * 109.46979 * 300.00342 * 20 18 16 23 23 H 1.48501 * 109.46878 * 60.00027 * 20 18 16 24 24 C 1.50700 * 109.46951 * 180.02562 * 3 2 1 25 25 O 1.20825 * 120.00505 * 359.97438 * 24 3 2 26 26 O 1.34230 * 119.99417 * 179.97438 * 24 3 2 27 27 H 1.09005 * 109.46583 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47530 * 299.99569 * 1 2 3 29 29 H 1.08998 * 109.47275 * 60.00822 * 1 2 3 30 30 H 1.08997 * 109.47845 * 240.00015 * 2 1 3 31 31 H 1.08998 * 109.47275 * 119.99178 * 2 1 3 32 32 H 1.09004 * 109.47270 * 60.00067 * 4 3 2 33 33 H 1.08999 * 109.47133 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47000 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.47249 * 300.00229 * 5 4 3 36 36 H 1.08999 * 109.46781 * 60.00225 * 5 4 3 37 37 H 1.09004 * 109.47250 * 300.00084 * 6 3 2 38 38 H 1.09005 * 109.47069 * 180.02562 * 6 3 2 39 39 H 0.96994 * 119.99831 * 359.97438 * 7 6 3 40 40 H 1.07999 * 119.94930 * 359.97438 * 11 10 8 41 41 H 1.08002 * 119.66077 * 179.72069 * 12 11 10 42 42 H 1.08002 * 119.72114 * 180.02562 * 13 12 11 43 43 H 1.08002 * 120.06118 * 180.02562 * 14 13 12 44 44 H 0.97001 * 119.99430 * 354.82448 * 19 18 16 45 45 H 0.96704 * 116.99451 * 179.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5298 2.1637 -1.2493 5 6 2.0399 1.4425 -2.4985 6 6 1.5299 2.1638 1.2492 7 7 2.0182 1.4733 2.4454 8 6 1.6930 1.9341 3.6694 9 8 0.9937 2.9228 3.7810 10 6 2.1849 1.2395 4.8733 11 6 2.9281 0.0682 4.7536 12 6 3.3823 -0.5829 5.8850 13 6 3.1114 -0.0782 7.1496 14 6 2.3844 1.0804 7.2997 15 6 1.9094 1.7620 6.1640 16 6 1.1637 2.9488 6.3068 17 1 1.2588 3.7376 5.5753 18 6 0.2974 3.1057 7.3988 19 7 -0.1115 2.0585 8.0640 20 14 -0.2713 4.8124 7.9022 21 1 -1.1737 4.7071 9.0767 22 1 0.9079 5.6424 8.2573 23 1 -0.9995 5.4446 6.7729 24 6 3.5469 1.4426 -0.0006 25 8 4.1512 0.3963 -0.0006 26 8 4.2179 2.6052 -0.0013 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 0.4398 2.1637 -1.2493 33 1 1.8935 3.1913 -1.2495 34 1 1.6769 1.9565 -3.3885 35 1 3.1300 1.4425 -2.4985 36 1 1.6766 0.4148 -2.4984 37 1 0.4398 2.1637 1.2492 38 1 1.8928 3.1917 1.2490 39 1 2.5756 0.6845 2.3564 40 1 3.1456 -0.3348 3.7755 41 1 3.9544 -1.4935 5.7842 42 1 3.4742 -0.5994 8.0232 43 1 2.1787 1.4659 8.2874 44 1 0.1225 1.1681 7.7583 45 1 5.1836 2.5546 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589500336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:01 Heat of formation + Delta-G solvation = -129.657355 kcal Electronic energy + Delta-G solvation = -27731.508668 eV Core-core repulsion = 23905.822010 eV Total energy + Delta-G solvation = -3825.686658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04308 -39.02237 -37.67380 -36.72289 -36.13485 -34.12830 -33.37227 -31.37193 -30.26279 -29.45754 -28.61296 -25.57845 -24.88578 -23.61615 -23.00959 -22.03185 -20.89401 -19.56137 -19.15849 -18.18488 -17.87666 -16.91460 -16.61380 -15.74696 -15.36536 -15.25446 -14.88859 -14.64513 -14.10244 -14.04061 -13.87962 -13.68846 -13.35736 -13.18480 -12.87012 -12.61047 -12.38383 -12.19670 -12.08369 -11.94171 -11.75369 -11.66872 -11.57984 -11.33056 -11.13144 -10.91372 -10.81545 -10.74377 -10.60721 -10.40538 -10.36770 -10.16415 -9.62232 -9.08000 -8.54619 -8.45679 -7.79652 -7.61011 -7.15140 -4.46797 2.09167 2.23332 2.73816 2.86915 3.20298 3.30921 3.40856 3.76978 4.03282 4.05691 4.35274 4.48333 4.56706 4.63883 4.94378 5.03788 5.12186 5.21010 5.35731 5.41831 5.45486 5.55192 5.64724 5.71107 5.76143 5.85501 5.88203 5.93435 5.95696 6.05209 6.07891 6.16882 6.29881 6.38908 6.49169 6.71346 6.97385 7.01151 7.27255 7.49382 7.59542 7.72040 7.78006 7.88018 8.07353 8.20082 8.31450 8.72525 8.85312 9.31478 10.03834 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.003920 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.289384 B = 7140.272572 C = 7957.303817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.059 4.059 4 C -0.113 4.113 5 C -0.157 4.157 6 C 0.135 3.865 7 N -0.752 5.752 8 C 0.566 3.434 9 O -0.535 6.535 10 C -0.267 4.267 11 C -0.043 4.043 12 C -0.258 4.258 13 C -0.075 4.075 14 C -0.201 4.201 15 C 0.122 3.878 16 C -0.466 4.466 17 H 0.105 0.895 18 C 0.031 3.969 19 N -0.793 5.793 20 Si 1.070 2.930 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.492 3.508 25 O -0.514 6.514 26 O -0.509 6.509 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.391 0.609 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.298 0.702 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 -0.955 -16.027 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.144 4.144 3 C -0.061 4.061 4 C -0.151 4.151 5 C -0.214 4.214 6 C 0.010 3.990 7 N -0.408 5.408 8 C 0.360 3.640 9 O -0.413 6.413 10 C -0.271 4.271 11 C -0.062 4.062 12 C -0.278 4.278 13 C -0.094 4.094 14 C -0.220 4.220 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.123 0.877 18 C -0.190 4.190 19 N -0.416 5.416 20 Si 0.893 3.107 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.198 1.198 24 C 0.334 3.666 25 O -0.402 6.402 26 O -0.321 6.321 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.226 0.774 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.159 0.294 -14.781 14.830 hybrid contribution 2.066 -1.576 -1.210 2.866 sum 3.225 -1.282 -15.991 16.363 Atomic orbital electron populations 1.21904 0.94436 1.02395 1.02606 1.21501 0.96646 0.92613 1.03627 1.20944 0.87074 0.99600 0.98455 1.21599 1.02277 0.99676 0.91508 1.21884 1.00965 1.01190 0.97397 1.21227 1.00003 0.95956 0.81791 1.46100 1.56315 1.32957 1.05417 1.18344 0.79594 0.83777 0.82268 1.90680 1.38196 1.26362 1.86058 1.19374 1.14797 1.00123 0.92851 1.20718 0.95086 0.93999 0.96398 1.20242 1.11752 1.03109 0.92661 1.20746 0.97143 0.95592 0.95909 1.21258 1.04106 0.98417 0.98212 1.17489 0.90199 0.91142 0.89435 1.21175 1.18493 1.01483 1.08164 0.87688 1.27266 0.94038 1.05898 0.91819 1.70388 1.33169 1.01651 1.36421 0.83561 0.77352 0.72577 0.77164 1.19944 1.19967 1.19774 1.23308 0.91396 0.80986 0.70938 1.90714 1.70440 1.33263 1.45800 1.84545 1.26492 1.35787 1.85237 0.92112 0.91595 0.92181 0.90607 0.90889 0.89504 0.90202 0.91885 0.93157 0.91799 0.90158 0.90801 0.77397 0.89335 0.88891 0.88854 0.87505 0.88804 0.73322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.21 37.16 0.34 -1.23 16 2 C -0.11 -1.19 3.75 -26.73 -0.10 -1.29 16 3 C -0.06 -0.68 0.28 -155.66 -0.04 -0.73 16 4 C -0.11 -1.01 4.58 -26.73 -0.12 -1.13 16 5 C -0.16 -1.26 9.31 37.16 0.35 -0.92 16 6 C 0.13 1.97 4.15 -4.05 -0.02 1.95 16 7 N -0.75 -13.41 4.95 -61.38 -0.30 -13.72 16 8 C 0.57 13.07 7.73 -12.52 -0.10 12.97 16 9 O -0.53 -13.92 13.56 5.27 0.07 -13.85 16 10 C -0.27 -6.54 5.92 -104.36 -0.62 -7.16 16 11 C -0.04 -0.94 9.53 -39.22 -0.37 -1.31 16 12 C -0.26 -5.54 10.03 -39.37 -0.39 -5.93 16 13 C -0.08 -1.68 10.01 -39.60 -0.40 -2.07 16 14 C -0.20 -5.03 7.87 -38.88 -0.31 -5.33 16 15 C 0.12 3.25 5.17 -106.54 -0.55 2.70 16 16 C -0.47 -12.79 7.65 -37.82 -0.29 -13.08 16 17 H 0.11 3.00 5.92 -52.48 -0.31 2.69 16 18 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 19 N -0.79 -21.21 12.57 55.56 0.70 -20.51 16 20 Si 1.07 22.44 29.98 -169.99 -5.10 17.34 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C 0.49 6.25 4.92 36.01 0.18 6.43 16 25 O -0.51 -7.66 16.74 -18.75 -0.31 -7.97 16 26 O -0.51 -5.58 13.23 -39.26 -0.52 -6.10 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 30 H 0.08 0.79 6.39 -51.93 -0.33 0.46 16 31 H 0.07 0.94 6.82 -51.93 -0.35 0.58 16 32 H 0.09 0.68 6.43 -51.93 -0.33 0.35 16 33 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.45 7.22 -51.93 -0.37 0.07 16 36 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 37 H 0.08 1.18 6.43 -51.93 -0.33 0.84 16 38 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 39 H 0.39 6.57 4.93 -40.82 -0.20 6.37 16 40 H 0.09 1.67 6.41 -52.49 -0.34 1.33 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.11 2.72 6.94 -52.49 -0.36 2.35 16 44 H 0.30 8.17 6.55 -40.82 -0.27 7.90 16 45 H 0.41 2.85 9.10 45.56 0.41 3.26 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -31.72 358.56 -7.72 -39.44 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -5.12 Total: 15.37 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -2.53 Total: -15.40 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.39 Total: -34.23 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.76 Total: -27.92 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.10 Total: 17.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.72 -7.72 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589500336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.218 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds