Wall clock time and date at job start Tue Mar 31 2020 12:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46740 * 2 1 4 4 C 1.37662 * 119.96118 * 265.02012 * 3 2 1 5 5 C 1.39789 * 119.92268 * 180.02562 * 4 3 2 6 6 C 1.47462 * 120.07810 * 179.97438 * 5 4 3 7 7 O 1.21503 * 120.00120 * 359.97438 * 6 5 4 8 8 O 1.34758 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.39827 * 119.84272 * 359.97438 * 5 4 3 10 10 C 1.37627 * 119.91833 * 359.70312 * 9 5 4 11 11 C 1.39131 * 119.96178 * 84.99917 * 3 2 1 12 12 N 1.39410 * 119.92059 * 359.97438 * 11 3 2 13 13 C 1.34778 * 119.99934 * 155.37332 * 12 11 3 14 14 O 1.21271 * 120.00183 * 354.48136 * 13 12 11 15 15 C 1.50705 * 119.99788 * 174.20769 * 13 12 11 16 16 C 1.52998 * 109.46819 * 180.27581 * 15 13 12 17 17 C 1.53010 * 109.46818 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.46818 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47148 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99498 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00335 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99976 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47571 * 90.00143 * 23 21 19 25 25 H 1.48504 * 109.47355 * 210.00412 * 23 21 19 26 26 H 1.48504 * 109.47007 * 329.99905 * 23 21 19 27 27 H 1.08999 * 109.47869 * 300.00053 * 1 2 3 28 28 H 1.09003 * 109.46894 * 60.00593 * 1 2 3 29 29 H 1.09003 * 109.46791 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47189 * 239.99918 * 2 1 3 31 31 H 1.09003 * 109.46894 * 119.99407 * 2 1 3 32 32 H 1.08004 * 120.03979 * 359.97312 * 4 3 2 33 33 H 0.96699 * 116.99981 * 179.97438 * 8 6 5 34 34 H 1.07999 * 120.04176 * 180.02562 * 9 5 4 35 35 H 1.08007 * 119.95935 * 180.31142 * 10 9 5 36 36 H 0.97002 * 120.00172 * 335.37967 * 12 11 3 37 37 H 1.09005 * 109.46634 * 300.27585 * 15 13 12 38 38 H 1.08999 * 109.47099 * 60.27360 * 15 13 12 39 39 H 1.08996 * 109.47679 * 299.99735 * 16 15 13 40 40 H 1.09007 * 109.47320 * 60.00287 * 16 15 13 41 41 H 1.08999 * 109.46761 * 299.99775 * 17 16 15 42 42 H 1.08999 * 109.46794 * 59.99966 * 17 16 15 43 43 H 1.08997 * 109.47244 * 300.00421 * 18 17 16 44 44 H 1.08999 * 109.47465 * 60.00377 * 18 17 16 45 45 H 0.96996 * 120.00115 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3590 2.0345 -1.1882 5 6 2.8253 3.3524 -1.1872 6 6 3.1768 4.0129 -2.4579 7 8 3.0617 3.4115 -3.5073 8 8 3.6257 5.2835 -2.4551 9 6 2.9576 4.0427 0.0216 10 6 2.6228 3.4251 1.2050 11 6 2.1647 2.1110 1.2008 12 7 1.8320 1.4867 2.4020 13 6 2.3903 1.9039 3.5556 14 8 3.2553 2.7537 3.5381 15 6 1.9351 1.3190 4.8678 16 6 2.7177 1.9650 6.0128 17 6 2.2551 1.3715 7.3452 18 6 3.0372 2.0180 8.4903 19 6 2.5812 1.4340 9.8025 20 1 1.8109 0.6772 9.8181 21 6 3.1481 1.8651 10.9831 22 7 4.0865 2.7863 10.9641 23 14 2.5834 1.1407 12.6096 24 1 3.4107 -0.0486 12.9358 25 1 2.7325 2.1567 13.6824 26 1 1.1579 0.7382 12.5038 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.2560 1.4982 -2.1199 33 1 3.8437 5.6739 -3.3125 34 1 3.3172 5.0611 0.0260 35 1 2.7199 3.9595 2.1386 36 1 1.1988 0.7519 2.4076 37 1 0.8705 1.5112 5.0014 38 1 2.1129 0.2436 4.8674 39 1 3.7822 1.7728 5.8793 40 1 2.5398 3.0404 6.0133 41 1 1.1906 1.5642 7.4785 42 1 2.4326 0.2961 7.3450 43 1 4.1018 1.8259 8.3570 44 1 2.8593 3.0933 8.4903 45 1 4.4851 3.0899 11.7946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597450629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:50 Heat of formation + Delta-G solvation = -132.482360 kcal Electronic energy + Delta-G solvation = -25373.778156 eV Core-core repulsion = 21547.968996 eV Total energy + Delta-G solvation = -3825.809159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24216 -40.36138 -38.80181 -36.39939 -35.41678 -35.04428 -34.23590 -32.72430 -30.89289 -29.99259 -29.38763 -26.09852 -24.70285 -24.33528 -22.75613 -22.14333 -20.96020 -20.36730 -20.07727 -18.45668 -17.94266 -17.36435 -17.11371 -16.18828 -16.12303 -15.89821 -15.41176 -15.00224 -14.56871 -14.36008 -14.26313 -14.20707 -14.03702 -13.70158 -13.48179 -12.97407 -12.69732 -12.51702 -12.27196 -12.21910 -11.89330 -11.80056 -11.67612 -11.51769 -11.38812 -11.03515 -10.96706 -10.80963 -10.62398 -10.54279 -10.48768 -9.96088 -9.67632 -9.29717 -9.18298 -9.03286 -8.45103 -8.33686 -5.98365 -4.01083 0.31781 1.01655 2.05576 2.52316 2.67305 2.74409 3.31822 3.38125 3.40935 3.45427 4.23989 4.39363 4.45480 4.50494 4.67080 4.75571 4.84075 4.91539 4.98594 5.08336 5.15566 5.19728 5.25087 5.37081 5.45857 5.50244 5.65999 5.72006 5.76491 5.84509 5.93716 6.00916 6.02756 6.07369 6.16417 6.18592 6.44612 6.59180 6.74711 6.91865 7.02772 7.14495 7.57010 7.70003 7.84892 7.85013 8.02397 8.43961 9.06516 9.62781 11.12904 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.001954 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.329792 B =14324.710888 C =15345.893673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.027 4.027 5 C -0.159 4.159 6 C 0.532 3.468 7 O -0.522 6.522 8 O -0.512 6.512 9 C -0.038 4.038 10 C -0.149 4.149 11 C 0.201 3.799 12 N -0.676 5.676 13 C 0.511 3.489 14 O -0.504 6.504 15 C -0.138 4.138 16 C -0.105 4.105 17 C -0.110 4.110 18 C 0.020 3.980 19 C -0.521 4.521 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.413 0.587 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.413 0.587 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 -2.037 -27.881 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C -0.138 4.138 4 C -0.046 4.046 5 C -0.161 4.161 6 C 0.377 3.623 7 O -0.412 6.412 8 O -0.324 6.324 9 C -0.057 4.057 10 C -0.169 4.169 11 C 0.104 3.896 12 N -0.320 5.320 13 C 0.301 3.699 14 O -0.377 6.377 15 C -0.178 4.178 16 C -0.143 4.143 17 C -0.148 4.148 18 C -0.017 4.017 19 C -0.559 4.559 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.157 0.843 33 H 0.272 0.728 34 H 0.159 0.841 35 H 0.174 0.826 36 H 0.251 0.749 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.158 -1.669 -27.546 28.276 hybrid contribution -0.362 -0.440 0.319 0.653 sum -6.520 -2.109 -27.228 28.077 Atomic orbital electron populations 1.21819 0.94428 1.02222 1.02432 1.20493 0.96282 0.91791 1.03635 1.19505 1.05872 0.96992 0.91422 1.20858 0.93482 0.92391 0.97832 1.18930 1.10778 0.95670 0.90769 1.20836 0.72910 0.79265 0.89276 1.90882 1.51216 1.65333 1.33789 1.84584 1.77770 1.28851 1.41189 1.21362 0.93978 0.99889 0.90460 1.21483 1.02155 0.93167 1.00117 1.17976 0.94923 0.91465 0.85217 1.43861 1.45680 1.36938 1.05490 1.21466 0.80806 0.82137 0.85492 1.90690 1.29295 1.30862 1.86886 1.21866 1.02795 1.02160 0.90993 1.21493 0.99588 1.00374 0.92811 1.21652 0.99991 0.99393 0.93760 1.19094 0.95273 0.95963 0.91408 1.21268 1.20975 1.22186 0.91514 0.92748 1.25045 0.95142 0.95162 0.99252 1.69968 1.26517 1.29748 1.27164 0.86606 0.79030 0.78820 0.83590 1.20707 1.21242 1.19926 0.92715 0.92091 0.91813 0.90138 0.90832 0.84302 0.72831 0.84124 0.82557 0.74942 0.88453 0.88598 0.91588 0.91592 0.93372 0.93382 0.96575 0.96560 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.80 37.16 0.36 -0.40 16 2 C -0.08 -0.51 5.43 -27.88 -0.15 -0.66 16 3 C -0.14 -1.16 5.14 -104.50 -0.54 -1.70 16 4 C -0.03 -0.25 9.21 -39.21 -0.36 -0.61 16 5 C -0.16 -1.60 5.87 -104.97 -0.62 -2.22 16 6 C 0.53 5.33 8.26 34.49 0.28 5.61 16 7 O -0.52 -6.45 17.12 -19.27 -0.33 -6.78 16 8 O -0.51 -3.73 12.67 -40.65 -0.52 -4.24 16 9 C -0.04 -0.38 9.60 -39.21 -0.38 -0.76 16 10 C -0.15 -1.68 8.69 -39.46 -0.34 -2.02 16 11 C 0.20 2.04 6.41 -83.74 -0.54 1.50 16 12 N -0.68 -6.12 4.97 -9.86 -0.05 -6.17 16 13 C 0.51 6.14 7.63 -10.98 -0.08 6.06 16 14 O -0.50 -7.92 13.12 5.56 0.07 -7.85 16 15 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 16 C -0.10 -1.70 4.50 -26.73 -0.12 -1.82 16 17 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 18 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 19 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 20 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 23 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.05 0.27 7.44 -51.93 -0.39 -0.12 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 31 H 0.07 0.41 7.24 -51.93 -0.38 0.03 16 32 H 0.14 1.17 7.64 -52.48 -0.40 0.77 16 33 H 0.41 1.13 9.11 45.56 0.42 1.55 16 34 H 0.14 1.22 7.60 -52.49 -0.40 0.82 16 35 H 0.16 2.00 5.77 -52.48 -0.30 1.69 16 36 H 0.41 2.49 6.70 -40.82 -0.27 2.22 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -35.29 379.93 -8.61 -43.90 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.91 Total: -0.58 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.32 Total: -14.20 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.69 Total: -32.57 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.77 Total: -18.87 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.29 -8.61 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597450629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.583 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds