Wall clock time and date at job start Tue Mar 31 2020 12:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46740 * 2 1 4 4 C 1.37662 * 119.96118 * 265.02012 * 3 2 1 5 5 C 1.39789 * 119.92268 * 180.02562 * 4 3 2 6 6 C 1.47462 * 120.07810 * 179.97438 * 5 4 3 7 7 O 1.21503 * 120.00120 * 359.97438 * 6 5 4 8 8 O 1.34758 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.39827 * 119.84272 * 359.97438 * 5 4 3 10 10 C 1.37627 * 119.91833 * 359.70312 * 9 5 4 11 11 C 1.39131 * 119.96178 * 84.99917 * 3 2 1 12 12 N 1.39410 * 119.92059 * 359.97438 * 11 3 2 13 13 C 1.34778 * 119.99934 * 155.37332 * 12 11 3 14 14 O 1.21271 * 120.00183 * 354.48136 * 13 12 11 15 15 C 1.50705 * 119.99788 * 174.20769 * 13 12 11 16 16 C 1.52998 * 109.46819 * 180.27581 * 15 13 12 17 17 C 1.53010 * 109.46818 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.46818 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47148 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99498 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00335 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99976 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47571 * 90.00143 * 23 21 19 25 25 H 1.48504 * 109.47355 * 210.00412 * 23 21 19 26 26 H 1.48504 * 109.47007 * 329.99905 * 23 21 19 27 27 H 1.08999 * 109.47869 * 300.00053 * 1 2 3 28 28 H 1.09003 * 109.46894 * 60.00593 * 1 2 3 29 29 H 1.09003 * 109.46791 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47189 * 239.99918 * 2 1 3 31 31 H 1.09003 * 109.46894 * 119.99407 * 2 1 3 32 32 H 1.08004 * 120.03979 * 359.97312 * 4 3 2 33 33 H 0.96699 * 116.99981 * 179.97438 * 8 6 5 34 34 H 1.07999 * 120.04176 * 180.02562 * 9 5 4 35 35 H 1.08007 * 119.95935 * 180.31142 * 10 9 5 36 36 H 0.97002 * 120.00172 * 335.37967 * 12 11 3 37 37 H 1.09005 * 109.46634 * 300.27585 * 15 13 12 38 38 H 1.08999 * 109.47099 * 60.27360 * 15 13 12 39 39 H 1.08996 * 109.47679 * 299.99735 * 16 15 13 40 40 H 1.09007 * 109.47320 * 60.00287 * 16 15 13 41 41 H 1.08999 * 109.46761 * 299.99775 * 17 16 15 42 42 H 1.08999 * 109.46794 * 59.99966 * 17 16 15 43 43 H 1.08997 * 109.47244 * 300.00421 * 18 17 16 44 44 H 1.08999 * 109.47465 * 60.00377 * 18 17 16 45 45 H 0.96996 * 120.00115 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3590 2.0345 -1.1882 5 6 2.8253 3.3524 -1.1872 6 6 3.1768 4.0129 -2.4579 7 8 3.0617 3.4115 -3.5073 8 8 3.6257 5.2835 -2.4551 9 6 2.9576 4.0427 0.0216 10 6 2.6228 3.4251 1.2050 11 6 2.1647 2.1110 1.2008 12 7 1.8320 1.4867 2.4020 13 6 2.3903 1.9039 3.5556 14 8 3.2553 2.7537 3.5381 15 6 1.9351 1.3190 4.8678 16 6 2.7177 1.9650 6.0128 17 6 2.2551 1.3715 7.3452 18 6 3.0372 2.0180 8.4903 19 6 2.5812 1.4340 9.8025 20 1 1.8109 0.6772 9.8181 21 6 3.1481 1.8651 10.9831 22 7 4.0865 2.7863 10.9641 23 14 2.5834 1.1407 12.6096 24 1 3.4107 -0.0486 12.9358 25 1 2.7325 2.1567 13.6824 26 1 1.1579 0.7382 12.5038 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.2560 1.4982 -2.1199 33 1 3.8437 5.6739 -3.3125 34 1 3.3172 5.0611 0.0260 35 1 2.7199 3.9595 2.1386 36 1 1.1988 0.7519 2.4076 37 1 0.8705 1.5112 5.0014 38 1 2.1129 0.2436 4.8674 39 1 3.7822 1.7728 5.8793 40 1 2.5398 3.0404 6.0133 41 1 1.1906 1.5642 7.4785 42 1 2.4326 0.2961 7.3450 43 1 4.1018 1.8259 8.3570 44 1 2.8593 3.0933 8.4903 45 1 4.4851 3.0899 11.7946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597450629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:49 Heat of formation + Delta-G solvation = -154.503329 kcal Electronic energy + Delta-G solvation = -25374.733057 eV Core-core repulsion = 21547.968996 eV Total energy + Delta-G solvation = -3826.764060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05767 -41.16503 -39.63846 -37.12464 -36.69131 -36.15945 -34.89870 -34.62360 -32.05806 -30.95955 -30.37281 -27.65478 -25.76069 -24.96097 -24.06332 -23.12755 -21.84984 -21.54890 -21.26281 -19.23064 -18.69977 -18.39867 -18.10363 -17.99729 -17.09097 -16.67346 -16.51556 -16.19302 -15.85045 -15.43268 -15.25633 -14.89083 -14.74869 -14.52233 -14.40198 -14.31025 -13.73734 -13.65977 -13.58800 -13.29038 -12.99891 -12.81880 -12.79053 -12.61993 -12.34297 -12.17222 -12.14097 -12.08933 -11.87600 -11.79672 -11.59889 -11.34842 -11.32635 -11.12947 -10.78441 -10.53855 -9.93255 -9.23534 -8.17852 -6.29604 -0.46998 0.27109 1.21837 1.41272 1.43089 1.54076 1.67712 1.88657 2.07759 2.42595 2.69144 3.15083 3.55224 3.66926 3.75072 3.98336 4.04595 4.10827 4.15480 4.17204 4.31158 4.45898 4.51142 4.63653 4.68992 4.71796 4.84452 4.87398 4.93056 5.04205 5.05591 5.11842 5.20018 5.20777 5.25932 5.34857 5.37830 5.40149 5.43689 5.54478 5.58913 5.80455 5.80813 5.90196 6.26299 6.29259 6.89388 6.94403 7.00105 7.40011 8.94212 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.001954 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.329792 B =14324.710888 C =15345.893673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.031 4.031 5 C -0.169 4.169 6 C 0.537 3.463 7 O -0.549 6.549 8 O -0.507 6.507 9 C -0.040 4.040 10 C -0.166 4.166 11 C 0.189 3.811 12 N -0.657 5.657 13 C 0.513 3.487 14 O -0.550 6.550 15 C -0.127 4.127 16 C -0.098 4.098 17 C -0.096 4.096 18 C 0.017 3.983 19 C -0.540 4.540 20 H 0.067 0.933 21 C -0.008 4.008 22 N -0.938 5.938 23 Si 0.968 3.032 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.259 1.259 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.433 0.567 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.430 0.570 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.062 0.938 43 H -0.016 1.016 44 H -0.015 1.015 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 -4.234 -28.466 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.127 4.127 4 C -0.049 4.049 5 C -0.171 4.171 6 C 0.383 3.617 7 O -0.442 6.442 8 O -0.321 6.321 9 C -0.059 4.059 10 C -0.187 4.187 11 C 0.092 3.908 12 N -0.302 5.302 13 C 0.304 3.696 14 O -0.426 6.426 15 C -0.166 4.166 16 C -0.136 4.136 17 C -0.134 4.134 18 C -0.020 4.020 19 C -0.578 4.578 20 H 0.085 0.915 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.183 1.183 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.166 0.834 33 H 0.295 0.705 34 H 0.166 0.834 35 H 0.155 0.845 36 H 0.271 0.729 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.133 -3.880 -28.168 29.575 hybrid contribution 0.287 0.320 0.439 0.614 sum -7.846 -3.560 -27.730 29.037 Atomic orbital electron populations 1.21815 0.93422 1.03170 1.02316 1.20596 0.97037 0.89929 1.04627 1.19746 1.04483 0.98092 0.90388 1.21065 0.93161 0.92218 0.98502 1.19092 1.10957 0.96225 0.90788 1.20803 0.72371 0.79730 0.88762 1.90869 1.52617 1.66135 1.34554 1.84547 1.77043 1.27617 1.42881 1.21402 0.93959 1.00309 0.90205 1.21425 1.03435 0.94096 0.99711 1.18073 0.95410 0.91314 0.85983 1.43591 1.45330 1.36899 1.04391 1.21545 0.80237 0.81452 0.86393 1.90696 1.31487 1.32954 1.87489 1.21737 1.03348 1.03199 0.88320 1.21270 0.99231 0.99551 0.93532 1.21446 0.99611 0.99625 0.92682 1.19066 0.94433 0.94619 0.93847 1.21767 1.21121 1.22342 0.92584 0.91524 1.26085 0.95152 0.95519 1.03747 1.70125 1.27980 1.31373 1.28329 0.85403 0.79257 0.77972 0.78139 1.19797 1.21090 1.18280 0.92478 0.92639 0.90329 0.89173 0.89878 0.83397 0.70513 0.83395 0.84491 0.72911 0.85513 0.85527 0.93608 0.93519 0.91947 0.91932 0.99719 0.99674 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.80 71.98 0.71 -0.37 16 2 C -0.08 -0.79 5.43 29.85 0.16 -0.63 16 3 C -0.12 -1.94 5.14 -19.79 -0.10 -2.04 16 4 C -0.03 -0.53 9.21 22.51 0.21 -0.33 16 5 C -0.17 -3.31 5.87 -20.09 -0.12 -3.43 16 6 C 0.54 10.43 8.26 70.25 0.58 11.01 16 7 O -0.55 -13.25 17.12 19.82 0.34 -12.91 16 8 O -0.51 -6.90 12.67 -56.69 -0.72 -7.62 16 9 C -0.04 -0.81 9.60 22.51 0.22 -0.59 16 10 C -0.17 -3.82 8.69 22.35 0.19 -3.62 16 11 C 0.19 3.66 6.41 38.37 0.25 3.90 16 12 N -0.66 -10.68 4.97 -303.49 -1.51 -12.19 16 13 C 0.51 11.78 7.63 87.66 0.67 12.45 16 14 O -0.55 -17.72 13.12 -3.00 -0.04 -17.76 16 15 C -0.13 -2.56 5.70 29.85 0.17 -2.39 16 16 C -0.10 -3.18 4.50 30.60 0.14 -3.04 16 17 C -0.10 -3.67 5.15 30.60 0.16 -3.51 16 18 C 0.02 0.93 4.97 29.85 0.15 1.08 16 19 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 20 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 21 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 22 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 23 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 27 H 0.06 0.39 7.44 -2.39 -0.02 0.37 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 0.71 8.05 -2.39 -0.02 0.69 16 31 H 0.08 0.65 7.24 -2.39 -0.02 0.63 16 32 H 0.15 2.29 7.64 -2.91 -0.02 2.26 16 33 H 0.43 1.82 9.11 -74.06 -0.67 1.15 16 34 H 0.15 2.63 7.60 -2.91 -0.02 2.61 16 35 H 0.14 3.72 5.77 -2.91 -0.02 3.70 16 36 H 0.43 3.83 6.70 -92.71 -0.62 3.21 16 37 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 40 H 0.05 1.67 8.10 -2.38 -0.02 1.65 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 44 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 45 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -79.21 379.93 4.18 -75.03 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -0.28 Total: 9.19 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 4.07 Total: -21.92 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.22 Total: -70.22 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.42 Total: -38.28 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -79.21 4.18 -75.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597450629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.469 kcal (2) G-P(sol) polarization free energy of solvation -79.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds